BAC Information

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BAC

Clone NameB6Ng01-279J02
Chromosome5 (Build37)
Map Location 58,127,636 - 58,257,536
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279J02.bB6Ng01-279J02.g
ACCGA079516GA079517
length1,0621,088
definitionB6Ng01-279J02.b B6Ng01-279J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,127,636 - 58,128,658)(58,256,458 - 58,257,536)
sequence
gaattctagtcctgatattttgaggacacataacttttctgtctgaacta
ttttctccggcctatcaacagtcttaatactttgtatgagtcttcccagg
ttgctattacaaaatactgcaaactgggcacattgaacgcttagagttaa
atttcattttctctgaaaaacttagatcaaagtgctggtcagtgtggttt
ctggggaagcctctcactcagcttccagcttccatgtaactgcctgcgtt
ctccttattcctcccatgcattccctctgtgcatgcacagacagaaatct
ctatgcccgcttctctgagaaaaacactagcccttatcagatgaggacca
taaccttcagacctcttttaaccttaaatgcctatctggaagtactgaca
ttccacagtttatgattttaatagatggactcagaaatgcacagttctgt
ccatagcagagttcattcttggtcttcagtaagacataccagactggact
ataagcatttgcatgtctgctaattgtatttagtctttatattcagagga
gcacgtgctttcctcttttcctgtcaagaggaacctcaaatatgttttac
aatgatgaaagattcatatatgtgctttatctctgtggaaaaaatatgaa
tctataatgtgtatgcatgcacatacattttttaaatacatttcccagtt
tcctacatctaacatctcatgcatatcattgaatatttctgcagcatcta
gttttcattgagatttatcattttagttatttttaacattttggttattt
tacttttgctagccagtagtgtataaagggtatactaatgaataaaatag
cagtatccacccaaaagaatcccaaaaattgtaaattatttttaatgggc
aatatttaacactttagaagcaaccaatctattttttcttaatcattaaa
atttcaaaatgaaaaggcaggaggtaaactcctctttctgttcaagcaat
ttctaaggctaaagataaacaaaagagctgagcaaggccttttccttaaa
gggagtatcttt

gaattcttgattactggcatgtggtctagctattttgtggattacctatc
acaactaattcccaacttatctgctgccacccagcatatgtctgagtttc
agtcagcctcgctgatagcagatgcattcttcaggaaagcacatttatgt
tgatatttctgtacagaatatataatttgaaaattcattctggtggggta
tgaagagaaaactaacaagcattctgaaaaaaaatatgcagaatgctttc
tttctttaattgtgagaatcatttgtgtgccaaatataaaagtttagtct
tttcaaaacttcactaatgaggatatcgagtgaaaaacataaaaaaaatt
taataatcaaaggcagacttttatttgagagccattcaccatacattata
taaagaataagctttgtgtcttaagacattttggaaatagaagaccaatc
ctcatatgatatcaatctttcaaggtactaaacataaaatatataaaaca
gtgtaaagcaggatttctcagctttagctctattgacatttggggctcaa
tgattctttgttgcaggggtctagctacaaacactagaacactcagtagc
atccatgcctcctttcactggatgccaataacaccaggctacatataaca
acccaaaacatctccagagaaaccagagattgccctggaggcacagtaac
cctcagttgcaaaacacagcatgatagccacatacagtggtggagattac
agaatggagaacagctaactgcgtaatcagggaatgaggaatcatttttt
cttgggcagaaaaccaatacaatatcctctttcgttccataatattttgg
aacaagagaaagttattcccgtactactaggcaaaagcccaatttttctt
tagtgggctttgtgatcccagaacacatatgacttgaaagagatcttgga
gtttccaaggggaacactttcgttggtatgttaaatcagccaggcagaat
atagactctccttgaaatatattaaatgtatctggaagaatttatttact
ttaggtattcgtttcttacacataggggttaggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58127636_58128658
seq2: B6Ng01-279J02.b_47_1088

seq1  GAATTCTAGTCCTGATATTTTGAGGACACATAACTTTTCTGTCTGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCCTGATATTTTGAGGACACATAACTTTTCTGTCTGAACTA  50

seq1  TTTTCTCCGGCCTATCAACAGTCTTAATACTTTGTATGAGTCTTCCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCGGCCTATCAACAGTCTTAATACTTTGTATGAGTCTTCCCAGG  100

seq1  TTGCTATTACAAAATACTGCAAACTGGGCACATTGAACGCTTAGAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTACAAAATACTGCAAACTGGGCACATTGAACGCTTAGAGTTAA  150

seq1  ATTTCATTTTCTCTGAAAAACTTAGATCAAAGTGCTGGTCAGTGTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTCTCTGAAAAACTTAGATCAAAGTGCTGGTCAGTGTGGTTT  200

seq1  CTGGGGAAGCCTCTCACTCAGCTTCCAGCTTCCATGTAACTGCCTGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGCCTCTCACTCAGCTTCCAGCTTCCATGTAACTGCCTGCGTT  250

seq1  CTCCTTATTCCTCCCATGCATTCCCTCTGTGCATGCACAGACAGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTCCTCCCATGCATTCCCTCTGTGCATGCACAGACAGAAATCT  300

seq1  CTATGCCCGCTTCTCTGAGAAAAACACTAGCCCTTATCAGATGAGGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCGCTTCTCTGAGAAAAACACTAGCCCTTATCAGATGAGGACCA  350

seq1  TAACCTTCAGACCTCTTTTAACCTTAAATGCCTATCTGGAAGTACTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTCAGACCTCTTTTAACCTTAAATGCCTATCTGGAAGTACTGACA  400

seq1  TTCCACAGTTTATGATTTTAATAGATGGACTCAGAAATGCACAGTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTTTATGATTTTAATAGATGGACTCAGAAATGCACAGTTCTGT  450

seq1  CCATAGCAGAGTTCATTCTTGGTCTTCAGTAAGACATACCAGACTGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAGAGTTCATTCTTGGTCTTCAGTAAGACATACCAGACTGGACT  500

seq1  ATAAGCATTTGCATGTCTGCTAATTGTATTTAGTCTTTATATTCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTTGCATGTCTGCTAATTGTATTTAGTCTTTATATTCAGAGGA  550

seq1  GCACGTGCTTTCCTCTTTTCCTGTCAAGAGGAACCTCAAATATGTTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGCTTTCCTCTTTTCCTGTCAAGAGGAACCTCAAATATGTTTTAC  600

seq1  AATGATGAAAGATTCATATATGTGCTTTATCTCTGTGGAAAAAATATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAAAGATTCATATATGTGCTTTATCTCTGTGGAAAAAATATGAA  650

seq1  TCTATAATGTGTATGCATGCACATACATTTTTTAAATACATTTCCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATGTGTATGCATGCACATACATTTTTTAAATACATTTCCCAGTT  700

seq1  TCCTACATCTAACATCTCATGCATATCATTGAATATTTCTGCAGCATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATCTAACATCTCATGCATATCATTGAATATTTCTGCAGCATCTA  750

seq1  GTTTTCATTGAGATTTATCATTTTAGTTATTTTTAACATTTTGGTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTGAGATTTATCATTTTAGTTATTTTTAACATTTTGGTTATTT  800

seq1  TACTTTTGCTAGCCAGTAAGTGTATAAA-GGTATACTAATGAATAAAATA  849
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TACTTTTGCTAGCCAGT-AGTGTATAAAGGGTATACTAATGAATAAAATA  849

seq1  GCAGTATCCACCCAAAAGAATCC--AAAAATGTAAATTATTTTTAAT-GG  896
      |||||||||||||||||||||||  |||| ||||||||||||||||| ||
seq2  GCAGTATCCACCCAAAAGAATCCCAAAAATTGTAAATTATTTTTAATGGG  899

seq1  CAATA-TTAACAC-TTAGAAGCAACC-ATCTATTTTTTCTTAATCATTAA  943
      ||||| ||||||| |||||||||||| |||||||||||||||||||||||
seq2  CAATATTTAACACTTTAGAAGCAACCAATCTATTTTTTCTTAATCATTAA  949

seq1  A--TTCCAAATGAAAA-GCAGGA-GTTAACT-CTCTTTCTGT--CAGCA-  985
      |  ||| ||||||||| |||||| || |||| ||||||||||   |||| 
seq2  AATTTCAAAATGAAAAGGCAGGAGGTAAACTCCTCTTTCTGTTCAAGCAA  999

seq1  -TTCCTAGGC-AAAG--AAACAAAAGAGCTGAGCAA-GCCTTT  1023
       |||  |||| ||||  ||||||||||||||||||| ||||||
seq2  TTTCTAAGGCTAAAGATAAACAAAAGAGCTGAGCAAGGCCTTT  1042


seq1: chr5_58256458_58257536
seq2: B6Ng01-279J02.g_69_1155 (reverse)

seq1  CCCT-CTAACCC---TATGTAAGAAACAAATA-CTAAAGTAAAATAAATT  45
      |||| |||||||   | |||||||||| |||| ||||||| |||||||||
seq2  CCCTCCTAACCCCTATGTGTAAGAAACGAATACCTAAAGT-AAATAAATT  49

seq1  CTCTCAGATTCATTTAATATATTTAAAGAAGATTCTTATATTTTGCCTGG  95
      ||  ||||| |||||||||||||| ||| ||| || |||||| |||||||
seq2  CTTCCAGATACATTTAATATATTTCAAGGAGAGTC-TATATTCTGCCTGG  98

seq1  CTGATTTAACATTAACAACAAAAGTGTCCCCTTTGGAACTTCAAAGATCT  145
      ||||||||||| || |||| ||||||| ||| ||||||  || |||||||
seq2  CTGATTTAACA-TACCAACGAAAGTGTTCCCCTTGGAAACTCCAAGATCT  147

seq1  C-TTCAAGTTCATATGTGTTCTGGGATCACAAAG-CCACTAAAG-AAAAT  192
      | |||||| ||||||||||||||||||||||||| ||||||||| |||||
seq2  CTTTCAAG-TCATATGTGTTCTGGGATCACAAAGCCCACTAAAGAAAAAT  196

seq1  TGGGCTTTTGCCTAGTAGTTACGGAATAACTTTCTCTTGTTCCAAAATAT  242
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TGGGCTTTTGCCTAGTAGTACGGGAATAACTTTCTCTTGTTCCAAAATAT  246

seq1  TATGGAACG-AAGAGGATATTGTATTGGTTTTCTGCCCA--GAAAAATGA  289
      ||||||||| |||||||||||||||||||||||||||||   ||||||||
seq2  TATGGAACGAAAGAGGATATTGTATTGGTTTTCTGCCCAAGAAAAAATGA  296

seq1  TTCCTCATTCCCTGATTACGCAGTTAGCTGTTCTCCATTCTGTAATCTCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTCCCTGATTACGCAGTTAGCTGTTCTCCATTCTGTAATCTCC  346

seq1  ACCACTGTATGTGGCTATCATGCTGTGTTTTGCAACTGAGGGTTACTGTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTATGTGGCTATCATGCTGTGTTTTGCAACTGAGGGTTACTGTG  396

seq1  CCTCCAGGGCAATCTCTGGTTTCTCTGGAGATGTTTTGGGTTGTTATATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGCAATCTCTGGTTTCTCTGGAGATGTTTTGGGTTGTTATATG  446

seq1  TAGCCTGGTGTTATTGGCATCCAGTGAAAGGAGGCATGGATGCTACTGAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGTGTTATTGGCATCCAGTGAAAGGAGGCATGGATGCTACTGAG  496

seq1  TGTTCTAGTG-TTGTAGCTAGACCCCTGCAACAAAGAATCATTGAGCCCC  538
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGTGTTTGTAGCTAGACCCCTGCAACAAAGAATCATTGAGCCCC  546

seq1  AAATGTCAATAGAGCTAAAGCTGAGAAATCCTGCTTTACACTGTTTTATA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAATAGAGCTAAAGCTGAGAAATCCTGCTTTACACTGTTTTATA  596

seq1  TATTTTATGTTTAGTACCTTGAAAGATTGATATCATATGAGGATTGGTCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTTTAGTACCTTGAAAGATTGATATCATATGAGGATTGGTCT  646

seq1  TCTATTTCCAAAATGTCTTAAGACACAAAGCTTATTCTTTATATAATGTA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCAAAATGTCTTAAGACACAAAGCTTATTCTTTATATAATGTA  696

seq1  TGGTGAATGGCTCTCAAATAAAAGTCTGCCTTTGATTATTAAATTTTTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATGGCTCTCAAATAAAAGTCTGCCTTTGATTATTAAATTTTTTT  746

seq1  TATGTTTTTCACTCGATATCCTCATTAGTGAAGTTTTGAAAAGACTAAAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTCACTCGATATCCTCATTAGTGAAGTTTTGAAAAGACTAAAC  796

seq1  TTTTATATTTGGCACACAAATGATTCTCACAATTAAAGAAAGAAAGCATT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTGGCACACAAATGATTCTCACAATTAAAGAAAGAAAGCATT  846

seq1  CTGCATATTTTTTTTCAGAATGCTTGTTAGTTTTCTCTTCATACCCCACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATTTTTTTTCAGAATGCTTGTTAGTTTTCTCTTCATACCCCACC  896

seq1  AGAATGAATTTTCAAATTATATATTCTGTACAGAAATATCAACATAAATG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAATTTTCAAATTATATATTCTGTACAGAAATATCAACATAAATG  946

seq1  TGCTTTCCTGAAGAATGCATCTGCTATCAGCGAGGCTGACTGAAACTCAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTGAAGAATGCATCTGCTATCAGCGAGGCTGACTGAAACTCAG  996

seq1  ACATATGCTGGGTGGCAGCAGATAAGTTGGGAATTAGTTGTGATAGGTAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCTGGGTGGCAGCAGATAAGTTGGGAATTAGTTGTGATAGGTAA  1046

seq1  TCCACAAAATAGCTAGACCACATGCCAGTAATCAAGAATTC  1079
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAATAGCTAGACCACATGCCAGTAATCAAGAATTC  1087


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