BAC Information

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BAC

Clone NameB6Ng01-280B12
Chromosome5 (Build37)
Map Location 58,080,894 - 58,190,115
singlet/doubletdoublet
Overlap genePcdh7
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280B12.bB6Ng01-280B12.g
ACCGA079909GA079910
length1,181987
definitionB6Ng01-280B12.b B6Ng01-280B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,080,894 - 58,082,091)(58,189,123 - 58,190,115)
sequence
gaattcaacatctgggcctaggaagtcttttaggaaaatgtaaataacta
atctgttgactttttttcacatccaatcatagtatctatttcttcttctg
gtaccttgtgtctgtagagaaattcatgtgctttcctaagttatcctatt
tggggttttggcttatatcttgttttgtttcagttctgggcatggagaac
acaactttgaatgcagtatgtatgtaagtgattaggtactgagctatgtc
ctaagactcaaccatttatttacatacaattttatatagtattctctact
attgccttttcttttaaagataaataatgttcctttctgggcttagtaat
ttgagtcttctgtatcaggcaaatgctgaatatgtctataaattacttta
gctttactttattttttattttttatatttttgcttatttgtttttgttt
tttgaaaagaaagagataggatcacagtagatttaaacatatgcataaat
gcatttattagatctatgttaatctgcagcaatcatttttgaagataagg
tcaaacaaaaatattcttggaaaatatatgatttcagcatatttgtatag
catgtgaatacttgttcccaagtaatatttttagaagtccgagtcagtaa
aaatgtaaattattcaaaataagaagtgaaaaatatgaaaatataattaa
taaaagagaaaaatcaataattctgtaaataagaaatgtttgttactaaa
aaacagccaattttagtaagtcaaagcttaatagttaataacattcagtg
ctcttacagaggaccaggatttcgcttccaacacccacatgggccattta
ttaccttcttctgatatttgtgggcaccaggcctgcagacagtatataca
taagtacatgtaggtagctaaaacacatataaaagaaaatctttgaaaaa
taatttttacatacttaattgaaacagttaagacataacatccagtgctg
gcatgagtgtataggaaaaagaagtttaatacttcacaggagtagttcat
aactttttgaatcttctaaatgtatctggtatacctataaatttaaattg
gtagtagctattctattgactaaatggaaagtagactcagcaggttcacg
ttggatgaatcatcagtaactactgccttta

gaattcaatcactgttgttttttttttggggggtgggggttctccaataa
tcaaattcaattatagtgaactaaaattgacagtgaaggaacagtaaata
ttaatcatgtgtgcttaccttcctatgagatatgttagtgaaataaaata
tgtatacacttgcatggaaaaatacaccatcatcaaaacttaagagttct
aagtaccataaaactacacacaaaattttgcttacaattcataattaatg
atttgttagtttggaaaacgattaatgaaagaagaatcacagatggtgat
gtttatagttttgtctagttgaaaagaaaaagaattacaggattagagtg
aagtatggttccgaatgagttggcacggggcctctgaaatggctcagtgg
gtcaaggcacttgctacatcagcctgatggatgacttgaactcaatcttc
tgagtccttgtaaaactggaaggcataactgacactatagagttgtcctc
agtttgtagatgtatatcattcatgagcacactctcacacatcgcattca
ttcacacacactcacacgcacacttaaataataaatttttgaactttttt
attaaaaaaatggaattacctgttagcaaaatctggctcttggaaaataa
ccataatgactcgaagacagatgcacagaaatatgaaagtacagatgtga
gagggagattagagccagagcaacaaggagtccaggctaagatatttgtg
gtttattagaaatgaaccagttctaagtatttctgaaatgagtcatttta
atccttgaaagatctaacaggatattaagcagggcagaattgatgagttt
tttttaaataccgaattttatggaaaataaatgtccacaacattaaataa
tttactaagcttgccccagctactcagttcatccatttcatctttcggaa
tagtactaacaatacggcaaggtacataaagcttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58080894_58082091
seq2: B6Ng01-280B12.b_46_1226

seq1  GAATTCAACATCTGGGCCTAGGAAGTCTTTTAGGAAAATGTAAATAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCTGGGCCTAGGAAGTCTTTTAGGAAAATGTAAATAACTA  50

seq1  ATCTGTTGACTTTTTTTCACATCCAATCATAGTATCTATTTCTTCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGACTTTTTTTCACATCCAATCATAGTATCTATTTCTTCTTCTG  100

seq1  GTACCTTGTGTCTGTAGAGAAATTCATGTGCTTTCCTAAGTTATCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGTGTCTGTAGAGAAATTCATGTGCTTTCCTAAGTTATCCTATT  150

seq1  TGGGGTTTTGGCTTATATCTTGTTTTGTTTCAGTTCTGGGCATGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTGGCTTATATCTTGTTTTGTTTCAGTTCTGGGCATGGAGAAC  200

seq1  ACAACTTTGAATGCAGTATGTATGTAAGTGATTAGGTACTGAGCTATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTGAATGCAGTATGTATGTAAGTGATTAGGTACTGAGCTATGTC  250

seq1  CTAAGACTCAACCATTTATTTACATACAATTTTATATAGTATTCTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTCAACCATTTATTTACATACAATTTTATATAGTATTCTCTACT  300

seq1  ATTGCCTTTTCTTTTAAAGATAAATAATGTTCCTTTCTGGGCTTAGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTTCTTTTAAAGATAAATAATGTTCCTTTCTGGGCTTAGTAAT  350

seq1  TTGAGTCTTCTGTATCAGGCAAATGCTGAATATGTCTATAAATTACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTTCTGTATCAGGCAAATGCTGAATATGTCTATAAATTACTTTA  400

seq1  GCTTTACTTTATTTTTTATTTTTTATATTTTTGCTTATTTGTTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTTATTTTTTATTTTTTATATTTTTGCTTATTTGTTTTTGTTT  450

seq1  TTTGAAAAGAAAGAGATAGGATCACAGTAGATTTAAACATATGCATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGAAAGAGATAGGATCACAGTAGATTTAAACATATGCATAAAT  500

seq1  GCATTTATTAGATCTATGTTAATCTGCAGCAATCATTTTTGAAGATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTAGATCTATGTTAATCTGCAGCAATCATTTTTGAAGATAAGG  550

seq1  TCAAACAAAAATATTCTTGGAAAATATATGATTTCAGCATATTTGTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAAAATATTCTTGGAAAATATATGATTTCAGCATATTTGTATAG  600

seq1  CATGTGAATACTTGTTCCCAAGTAATATTTTTAGAAGTCCGAGTCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAATACTTGTTCCCAAGTAATATTTTTAGAAGTCCGAGTCAGTAA  650

seq1  AAATGTAAATTATTCAAAATAAGAAGTGAAAAATATGAAAATATAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATTATTCAAAATAAGAAGTGAAAAATATGAAAATATAATTAA  700

seq1  TAAAAGAGAAAAATCAATAATTCTGTAAATAAGAAATGTTTGTTACTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAAAATCAATAATTCTGTAAATAAGAAATGTTTGTTACTAAA  750

seq1  AAACAGCCAATTTTAGTAAGTCAAAGCTTAATAGTTAATAACATTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCAATTTTAGTAAGTCAAAGCTTAATAGTTAATAACATTCAGTG  800

seq1  CTCTTACAGAGGACCAGGATTTCGCTTCCAACACCCACAT-GGCCATTTA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTTACAGAGGACCAGGATTTCGCTTCCAACACCCACATGGGCCATTTA  850

seq1  TTACCTTCTTCTGATATTTGTGGGCACCAGGCCTGCAGACAGTATATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTTCTGATATTTGTGGGCACCAGGCCTGCAGACAGTATATACA  900

seq1  TAAGTACATGTAGGTAGCTAAAACACATATAAAAGAAAATCTTTGAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATGTAGGTAGCTAAAACACATATAAAAGAAAATCTTTGAAAAA  950

seq1  TAATTTTTACATACTTAATTGAAAACAGTTAAGACATAACATCCAGTGCT  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATTTTTACATACTTAATTG-AAACAGTTAAGACATAACATCCAGTGCT  999

seq1  GGCATGAGTGTATA-GAAAAAGAAGTTT-ATACTTCCACAGGAAGTAGTT  1047
      |||||||||||||| ||||||||||||| |||||| |||||| |||||||
seq2  GGCATGAGTGTATAGGAAAAAGAAGTTTAATACTT-CACAGG-AGTAGTT  1047

seq1  CATAAACTTTTTGAATCTTCTAAATTGTTAATCTGGTATACCTATTAAAT  1097
      ||| |||||||||||||||||||| |||  |||||||||||||| |||||
seq2  CAT-AACTTTTTGAATCTTCTAAA-TGT--ATCTGGTATACCTA-TAAAT  1092

seq1  TTAAATTGTAAGTAGGTATATCTATTAAATTAAAATTGAGAGTAGACTCA  1147
      ||||||||  ||||| ||| |||||| | |  |||| || ||||||||||
seq2  TTAAATTGGTAGTAGCTAT-TCTATTGACT--AAATGGAAAGTAGACTCA  1139

seq1  GCCAGTTTCACTTTTGGAATGTATTCTATCAATGTAAAACTACTGCCTTT  1197
      | ||| ||||| ||  | ||| ||   |||| |    |||||||||||||
seq2  G-CAGGTTCACGTT--GGATGAAT--CATCAGT----AACTACTGCCTTT  1180

seq1  A  1198
      |
seq2  A  1181


seq1: chr5_58189123_58190115
seq2: B6Ng01-280B12.g_67_1053 (reverse)

seq1  CATAAGCTTTTTATGTA-CTTGCTGGTATTGTATGTAACTAATCCGGAAG  49
      |||||||  |||||||| |||||  |||||||  || |||| |||| |||
seq2  CATAAGC--TTTATGTACCTTGC-CGTATTGTTAGT-ACTATTCCGAAAG  46

seq1  ATGAAATTGAATGAACTGGAGTTAGGCTGGGGGCAAGCTTAGTTAAATTA  99
      |||||| || ||||||| ||||   ||| ||||||||||||| |||||||
seq2  ATGAAA-TGGATGAACT-GAGT--AGCT-GGGGCAAGCTTAG-TAAATTA  90

seq1  ATTTTAATGGTGTGGACATTTATTTT-CATAAATTCGGGTATTTAAAAAA  148
        ||||||| |||||||||||||||| |||||| |  |||||||||||||
seq2  --TTTAATGTTGTGGACATTTATTTTCCATAAAATTCGGTATTTAAAAAA  138

seq1  AACTCATCAATTCTGCCCTGCTT-ATATCCTG-TAGATCTTTCAAGGA-T  195
      ||||||||||||||||||||||| |||||||| ||||||||||||||| |
seq2  AACTCATCAATTCTGCCCTGCTTAATATCCTGTTAGATCTTTCAAGGATT  188

seq1  AAAATGACTCATTTCAGAAATACTTAGAACTGGTTCATTTCTAATAAACC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTCATTTCAGAAATACTTAGAACTGGTTCATTTCTAATAAACC  238

seq1  ACAAATATCTTAGCCTGGACTCC-TGTTGCTCTGGCTCTAATCTCCCTCT  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAAATATCTTAGCCTGGACTCCTTGTTGCTCTGGCTCTAATCTCCCTCT  288

seq1  CACATCTGTACTTTCATATTTCTGTGCATCTGTCTTCGAGTCATTATGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTACTTTCATATTTCTGTGCATCTGTCTTCGAGTCATTATGGT  338

seq1  TATTTTCCAAGAGCCAGATTTTGCTAACAGGTAATTCCATTTTTTTAATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAAGAGCCAGATTTTGCTAACAGGTAATTCCATTTTTTTAATA  388

seq1  AAAAAGTTCAAAAATTTATTATTTAAGTGTGCGTGTGAGTGTGTGTGAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCAAAAATTTATTATTTAAGTGTGCGTGTGAGTGTGTGTGAAT  438

seq1  GAATGCGATGTGTGAGAGTGTGCTCATGAATGATATACATCTACAAACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCGATGTGTGAGAGTGTGCTCATGAATGATATACATCTACAAACTG  488

seq1  AGGACAACTCTATAGTGTCAGTTATGCCTTCCAGTTTTACAAGGACTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACTCTATAGTGTCAGTTATGCCTTCCAGTTTTACAAGGACTCAG  538

seq1  AAGATTGAGTTCAAGTCATCCATCAGGCTGATGTAGCAAGTGCCTTGACC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGTTCAAGTCATCCATCAGGCTGATGTAGCAAGTGCCTTGACC  588

seq1  CACTGAGCCATTTCAGAGGCCCCGTGCCAACTCATTCGGAACCATACTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATTTCAGAGGCCCCGTGCCAACTCATTCGGAACCATACTTC  638

seq1  ACTCTAATCCTGTAATTCTTTTTCTTTTCAACTAGACAAAACTATAAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATCCTGTAATTCTTTTTCTTTTCAACTAGACAAAACTATAAACA  688

seq1  TCACCATCTGTGATTCTTCTTTCATTAATCGTTTTCCAAACTAACAAATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCTGTGATTCTTCTTTCATTAATCGTTTTCCAAACTAACAAATC  738

seq1  ATTAATTATGAATTGTAAGCAAAATTTTGTGTGTAGTTTTATGGTACTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATGAATTGTAAGCAAAATTTTGTGTGTAGTTTTATGGTACTTA  788

seq1  GAACTCTTAAGTTTTGATGATGGTGTATTTTTCCATGCAAGTGTATACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTAAGTTTTGATGATGGTGTATTTTTCCATGCAAGTGTATACAT  838

seq1  ATTTTATTTCACTAACATATCTCATAGGAAGGTAAGCACACATGATTAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCACTAACATATCTCATAGGAAGGTAAGCACACATGATTAAT  888

seq1  ATTTACTGTTCCTTCACTGTCAATTTTAGTTCACTATAATTGAATTTGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGTTCCTTCACTGTCAATTTTAGTTCACTATAATTGAATTTGAT  938

seq1  TATTGGAGAACCCCCACCCCCCAAAAAAAAAACAACAGTGATTGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGAACCCCCACCCCCCAAAAAAAAAACAACAGTGATTGAATTC  987


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