BAC Information

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BAC

Clone NameB6Ng01-280E03
Chromosome5 (Build37)
Map Location 121,320,471 - 121,454,960
singlet/doubletdoublet
Overlap geneOas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
Upstream geneTbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f
Downstream geneLOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280E03.bB6Ng01-280E03.g
ACCGA080029GA080030
length8491,094
definitionB6Ng01-280E03.b B6Ng01-280E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,320,471 - 121,321,318)(121,453,875 - 121,454,960)
sequence
gaattctctactgggtcaccggaacaagccccattcaaccaaataggctg
cctatcacagtcccacaggatctgatttctagttctcaccccagcaatgt
agagggaggcactttacccctgagccacctccctagcctcttcccaggta
cttcagagaccatgaaaatctcccagagggagcccttgttaagtcctgcc
tccaccctcactcctagctgttgctcatggtgtcttgattcctcccgtgt
ctgctagtgaatgctgtctttgtggagcatacagggtcagtctcaaccac
tcagctcttggctatagcagaggaggggccagagactgagtctaaataac
tggctgtgaaatgacatcatcaggaggcagctgaattgagcctgtgagaa
gtgtcccccacatcagagatgagagcctcttgtttcttattgcctttctc
ttctcagtgtaaggagaagctgagggagccgctgcctccacagtacgccc
tggagctgctcactgtctatgcctgggaacatgagcttccagacaaacat
gaaacacagacagctcggggtttccggaccgtcttagaactgatcactaa
gtacctatgtcttcgaatctactggacattgtattatgacgttctacatg
aacaggtcaatgcctacctgtactcacaggtcaaaagagtcaggtagctt
gtctccacatagctctgctttccgtgggtgtcaggctgtaatcctgtgaa
aagggagaggtgggagttctgtgtcagcgcagcatctcctgtcaccggac
tgacatgaggtcctaatgccctgggagatgggggagggaggatgtttat
gaattctctgctgaactttagccctttgctccccaagtattgaccaaggg
gcagatgcttctggggtgggtggagagtcagtgccgctggatgtagtcac
ttagatgatagtaagaaagcctatgccttcctacctgggaggcaggcttg
ggtttggcagcagaagagaagtttgcatcaaccaggggctttggaggcag
cagagactgagaaagatcaagggtgctggctgtgtcctgccgggtgacct
gggagggtgggaagggtgctgggtactaaacttccgtcgttgctgcacca
cggaggctgaggagcctggatgggggcttggttcagtctgtgattcataa
agtccccttgtaaagtgttatcaggtgtttcttgatcccccaaactctta
aatgtgggcacctgtgtgttcacacaccacagggccctgaaggcattttt
ttttttaagagtacagagagagtacttgggtagatggagcttctggcact
tctggtgtgtaatgagacttgatgttctccctgaggtctggcctctgtac
ccaagaggttgagcaggactggaatctggagcaggctctacctcctgtcc
cccaccatttgctttcttattcttgtctccatccctgctaaccttggggg
actctgggttctaacatggcaccaggccactgcctgcaatgtcaccacag
tttccttgaagccattgtcctgccgtcattagcgttaatgatataatgca
ggctgaaatctcattgcactggagccgcagccgcggctgactgtgcctta
gtgaacccagccagagagcaggagatggggccttcaggaagctggggtgt
gcccgccccccacaatttcaccaccgacagggctcctctcctggcatcaa
gcaatgttttgtgaagagtgagcgactggaaagaggaactctcttcgcct
cagctcccgcctggcgcttcagctgaccgatctttcctcttttttttccc
tttcgctgcgtctccacagtgacaaggcataagactttgtgaaatgaggc
cactttcagcagccagccaccttacattaggtgcctttctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121320471_121321318
seq2: B6Ng01-280E03.b_47_895

seq1  GAATTCTCTACTGGGTCACCGGAACAAGCCCCATTCAACCAAATAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGGGTCACCGGAACAAGCCCCATTCAACCAAATAGGCTG  50

seq1  CCTATCACAGTCCCACAGGATCTGATTTCTAGTTCTCACCCCAGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACAGTCCCACAGGATCTGATTTCTAGTTCTCACCCCAGCAATGT  100

seq1  AGAGGGAGGCACTTTACCCCTGAGCCACCTCCCTAGCCTCTTCCCAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGCACTTTACCCCTGAGCCACCTCCCTAGCCTCTTCCCAGGTA  150

seq1  CTTCAGAGACCATGAAAATCTCCCAGAGGGAGCCCTTGTTAAGTCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGACCATGAAAATCTCCCAGAGGGAGCCCTTGTTAAGTCCTGCC  200

seq1  TCCACCCTCACTCCTAGCTGTTGCTCATGGTGTCTTGATTCCTCCCGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTCACTCCTAGCTGTTGCTCATGGTGTCTTGATTCCTCCCGTGT  250

seq1  CTGCTAGTGAATGCTGTCTTTGTGGAGCATACAGGGTCAGTCTCAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTGAATGCTGTCTTTGTGGAGCATACAGGGTCAGTCTCAACCAC  300

seq1  TCAGCTCTTGGCTATAGCAGAGGAGGGGCCAGAGACTGAGTCTAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTTGGCTATAGCAGAGGAGGGGCCAGAGACTGAGTCTAAATAAC  350

seq1  TGGCTGTGAAATGACATCATCAGGAGGCAGCTGAATTGAGCCTGTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGAAATGACATCATCAGGAGGCAGCTGAATTGAGCCTGTGAGAA  400

seq1  GTGTCCCCCACATCAGAGATGAGAGCCTCTTGTTTCTTATTGCCTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCCCACATCAGAGATGAGAGCCTCTTGTTTCTTATTGCCTTTCTC  450

seq1  TTCTCAGTGTAAGGAGAAGCTGAGGGAGCCGCTGCCTCCACAGTACGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGTAAGGAGAAGCTGAGGGAGCCGCTGCCTCCACAGTACGCCC  500

seq1  TGGAGCTGCTCACTGTCTATGCCTGGGAACATGAGCTTCCAGACAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGCTCACTGTCTATGCCTGGGAACATGAGCTTCCAGACAAACAT  550

seq1  GAAACACAGACAGCTCGGGGTTTCCGGACCGTCTTAGAACTGATCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGACAGCTCGGGGTTTCCGGACCGTCTTAGAACTGATCACTAA  600

seq1  GTACCTATGTCTTCGAATCTACTGGACATTGTATTATGACGTTCTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATGTCTTCGAATCTACTGGACATTGTATTATGACGTTCTACATG  650

seq1  AACAGGTCAATGCCTACCTGTACTCACAGGTCAAAAGAGTCAGGTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTCAATGCCTACCTGTACTCACAGGTCAAAAGAGTCAGGTAGCTT  700

seq1  GTCTCCACATAGCTCTGCTTTCCGTGGGTGTCAGGCTGTAATCCTGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACATAGCTCTGCTTTCCGTGGGTGTCAGGCTGTAATCCTGTGAA  750

seq1  AAGGGAGAGGTGGGAGTTCTGTGTCAGCGCAGCATCTCCTGTCACCGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGGTGGGAGTTCTGTGTCAGCGCAGCATCTCCTGTCACCGGAC  800

seq1  TGACATGAGGTCCTAATGCCCTGGGAGAT-GGGGAGGGAGGATGTTTAT  848
      ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGACATGAGGTCCTAATGCCCTGGGAGATGGGGGAGGGAGGATGTTTAT  849

seq1: chr5_121453875_121454960
seq2: B6Ng01-280E03.g_68_1161 (reverse)

seq1  GCACAGAAAAGCCACTTATGTAAGGT-GCGTGCTGCTGAAAGTGGCTTCA  49
      ||||||||| ||  || ||||||||| ||  ||||||||||||||| |||
seq2  GCACAGAAAGGCACCTAATGTAAGGTGGCTGGCTGCTGAAAGTGGCCTCA  50

seq1  -TTCAC-AAGTC-TCTGCC-TGTCACTGTGGAGACGCAGCG-AAGGGGAA  94
       ||||| ||||| | |||| ||||||||||||||||||||| ||||| ||
seq2  TTTCACAAAGTCTTATGCCTTGTCACTGTGGAGACGCAGCGAAAGGGAAA  100

seq1  AAAAAGAGGAAAGAATCGGGCAGCTGGAAGCGCCAGGCGGGAGCTGAGGC  144
      ||||||||||||| ||||| ||||| ||||||||||||||||||||||||
seq2  AAAAAGAGGAAAG-ATCGGTCAGCT-GAAGCGCCAGGCGGGAGCTGAGGC  148

seq1  GGAAGAGAGTTCCTCTTTCC-GTCGCTCACTCTTCAC-AAACATGGCTTG  192
       ||||||||||||||||||| |||||||||||||||| |||||| |||||
seq2  -GAAGAGAGTTCCTCTTTCCAGTCGCTCACTCTTCACAAAACATTGCTTG  197

seq1  ATGCCAGGAGAGGAGCCCTGTCGGTGGTG-AATTGTGGGGGGCGGGCACA  241
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCCAGGAGAGGAGCCCTGTCGGTGGTGAAATTGTGGGGGGCGGGCACA  247

seq1  CCCCAGCTTCCTG-AGGCCCCATCTCCTGCTCTCTGGCT-GGTTCACTAA  289
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CCCCAGCTTCCTGAAGGCCCCATCTCCTGCTCTCTGGCTGGGTTCACTAA  297

seq1  GGCACAGTCAGCCGCGGCTGCGGCTCCAGTGCAATGAGATTTCAGCCTGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTCAGCCGCGGCTGCGGCTCCAGTGCAATGAGATTTCAGCCTGC  347

seq1  ATTATATCATTAACGCTAATGACGGCAGGACAATGGCTTCAAGGAAACTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCATTAACGCTAATGACGGCAGGACAATGGCTTCAAGGAAACTG  397

seq1  TGGTGACATTGCAGGCAGTGGCCTGGTGCCATGTTAGAACCCAGAGTCCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACATTGCAGGCAGTGGCCTGGTGCCATGTTAGAACCCAGAGTCCC  447

seq1  CCAAGGTTAGCAGGGATGGAGACAAGAATAAGAAAGCAAATGGTGGGGGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTAGCAGGGATGGAGACAAGAATAAGAAAGCAAATGGTGGGGGA  497

seq1  CAGGAGGTAGAGCCTGCTCCAGATTCCAGTCCTGCTCAACCTCTTGGGTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTAGAGCCTGCTCCAGATTCCAGTCCTGCTCAACCTCTTGGGTA  547

seq1  CAGAGGCCAGACCTCAGGGAGAACATCAAGTCTCATTACACACCAGAAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCAGACCTCAGGGAGAACATCAAGTCTCATTACACACCAGAAGT  597

seq1  GCCAGAAGCTCCATCTACCCAAGTACTCTCTCTGTACTCTTAAAAAAAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGCTCCATCTACCCAAGTACTCTCTCTGTACTCTTAAAAAAAAA  647

seq1  AATGCCTTCAGGGCCCTGTGGTGTGTGAACACACAGGTGCCCACATTTAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCAGGGCCCTGTGGTGTGTGAACACACAGGTGCCCACATTTAA  697

seq1  GAGTTTGGGGGATCAAGAAACACCTGATAACACTTTACAAGGGGACTTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGGGGATCAAGAAACACCTGATAACACTTTACAAGGGGACTTTA  747

seq1  TGAATCACAGACTGAACCAAGCCCCCATCCAGGCTCCTCAGCCTCCGTGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACAGACTGAACCAAGCCCCCATCCAGGCTCCTCAGCCTCCGTGG  797

seq1  TGCAGCAACGACGGAAGTTTAGTACCCAGCACCCTTCCCACCCTCCCAGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAACGACGGAAGTTTAGTACCCAGCACCCTTCCCACCCTCCCAGG  847

seq1  TCACCCGGCAGGACACAGCCAGCACCCTTGATCTTTCTCAGTCTCTGCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCGGCAGGACACAGCCAGCACCCTTGATCTTTCTCAGTCTCTGCTG  897

seq1  CCTCCAAAGCCCCTGGTTGATGCAAACTTCTCTTCTGCTGCCAAACCCAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGCCCCTGGTTGATGCAAACTTCTCTTCTGCTGCCAAACCCAA  947

seq1  GCCTGCCTCCCAGGTAGGAAGGCATAGGCTTTCTTACTATCATCTAAGTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCCCAGGTAGGAAGGCATAGGCTTTCTTACTATCATCTAAGTG  997

seq1  ACTACATCCAGCGGCACTGACTCTCCACCCACCCCAGAAGCATCTGCCCC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCCAGCGGCACTGACTCTCCACCCACCCCAGAAGCATCTGCCCC  1047

seq1  TTGGTCAATACTTGGGGAGCAAAGGGCTAAAGTTCAGCAGAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAATACTTGGGGAGCAAAGGGCTAAAGTTCAGCAGAGAATTC  1094