BAC Information

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BAC

Clone NameB6Ng01-280J07
Chromosome5 (Build37)
Map Location 16,301,802 - 16,302,999
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280J07.bB6Ng01-280J07.g
ACCGA080272GA080273
length1,191986
definitionB6Ng01-280J07.b B6Ng01-280J07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcagcattgttttaaactctgacctattcttgagtaaagtt
cagtatgaagtatgaattgaaaaaaaaaccatagcactctagtttaatgc
tttatgcaaggctatatagtttggccttttactcatattattttatttta
tttttattgttttaagtaaagttattgaagcacactcatctttttcttaa
agctgtatttatgtttattttatgtctgtgggtactttgcatacatgtat
gtctgtgcaccatatgtatacaatgcttctataatccagaagaaggtgtt
ggatcctcttcaactggaattacaaatggctattagctaccatatggata
ttagaactagaactcgggtctactaggtgaacaatcaatactattaacca
ctgagctatctctccagctataccattcatcttttgatttctatgacact
gttttcctaaccacacctttcctctacctcttcttccccaccaccctagc
atttctcttccttattatgtacactgtgttatttagggctatattggttt
ccacatacttattagacctagcatgcatgactttactaaaaacttaccca
actatcacattaccacagttactacgtatatttggatgatcacaaaatac
ataccaaaatcccagacattatgagtgaaccctagttaaacatatcttct
acaaagaggtactcagaaaccccttaaatttaattattccaaggcttgat
tagcttttcctaaaacttcacctttaacctttgtgggagtcccatatata
atatattactctcaaaagacaaagcagccctgtacaagaacatacaacct
tcaagtaccccatgggcctgcatcctctagtacttttgaagaacatcaca
cacatgatggttattagacttgctaccgtatgccctttagaaatgtgtga
caaaatgtggatgcagactttcagcacaagcttctgtctgattgaaatcc
atctcaaatggcctgggattctaattctttgctacataatcttcatcttg
aaatcacttgtctccaggcatttccatcaatctcatgtgttttataccag
tctcttgtacagcttcctgccttccaggcttttttttttcactattcctt
ttattggcagacttcataagagaaaatgttactcacctaaa

gaattccaacttaaagaacaaaaatatcatggaagcaacaattacttttc
cttaatatctctgaatatcaatggactcgactccccaataaaaagatata
gactaacaaactggctacacaaataaggcccaacattttgctgcttacag
gaaacgcatctcagagaaaaagatagacactacctcagaatgaaaggctg
gaaaacaattttccaagcaaatggtatgaagaaacaagctggagtagcca
tcctaatatctgataagattgacttccaacccaaagtcatcaaaaaagac
aaggaggggcacgtaatactcatcaaaggtaaaatcctccaagaggaact
ctcaattctgaatatctatgctccaaatacaagggcagccacattcatta
aagaaactttagtaaagctcaaagcacacattgcacctcacacaataata
gtgggagacttcaacacacctctttcatcaatggacagatcgtggaaaca
gaaactaaagagggacaaagtgaaactaacagaagtaatgaaacaaatgg
acttaacagatatctacagaacattttatcctaaaacaaaaggatatacc
ttcttctcagcacctcatggtaccttctccaaaattgaccacataaaagg
tcacaaaagaagcctcaacatatacaaaaatattgaaatagtcctatgca
tcctatcagatcaccatggactaagactgatcttcaataacaacataaaa
aatagaaagccaacattcacgtggaaactgaacaacactcttctcaatga
taccttggtcaaggaaggaataaagaaagaaattaaggactttttggagt
ttaatgaaaatgaagccgcaacattcccaaacttatgggacacaatgaaa
gcatttctaagaggaaactcatagctctaagtgcctccaaaagaaactag
acagagcacacattagcagcctgacaacacacctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16301802_16302999
seq2: B6Ng01-280J07.b_47_1237

seq1  GAATTCTCTTCAGCATTGTTTTAAACTCTGACCTATTCTTGAGTAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGCATTGTTTTAAACTCTGACCTATTCTTGAGTAAAGTT  50

seq1  CAGTATGAAGTATGAATTGAAAAAAAAACCATAGCACTCTAGTTTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAAGTATGAATTGAAAAAAAAACCATAGCACTCTAGTTTAATGC  100

seq1  TTTATGCAAGGCTATATAGTTTGGCCTTTTACTCATATTATTTTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAAGGCTATATAGTTTGGCCTTTTACTCATATTATTTTATTTTA  150

seq1  TTTTTATTGTTTTAAGTAAAGTTATTGAAGCACACTCATCTTTTTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGTTTTAAGTAAAGTTATTGAAGCACACTCATCTTTTTCTTAA  200

seq1  AGCTGTATTTATGTTTATTTTATGTCTGTGGGTACTTTGCATACATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATTTATGTTTATTTTATGTCTGTGGGTACTTTGCATACATGTAT  250

seq1  GTCTGTGCACCATATGTATACAATGCTTCTATAATCCAGAAGAAGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCACCATATGTATACAATGCTTCTATAATCCAGAAGAAGGTGTT  300

seq1  GGATCCTCTTCAACTGGAATTACAAATGGCTATTAGCTACCATATGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCTTCAACTGGAATTACAAATGGCTATTAGCTACCATATGGATA  350

seq1  TTAGAACTAGAACTCGGGTCTACTAGGTGAACAATCAATACTATTAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTAGAACTCGGGTCTACTAGGTGAACAATCAATACTATTAACCA  400

seq1  CTGAGCTATCTCTCCAGCTATACCATTCATCTTTTGATTTCTATGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTATCTCTCCAGCTATACCATTCATCTTTTGATTTCTATGACACT  450

seq1  GTTTTCCTAACCACACCTTTCCTCTACCTCTTCTTCCCCACCACCCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTAACCACACCTTTCCTCTACCTCTTCTTCCCCACCACCCTAGC  500

seq1  ATTTCTCTTCCTTATTATGTACACTGTGTTATTTAGGGCTATATTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTCCTTATTATGTACACTGTGTTATTTAGGGCTATATTGGTTT  550

seq1  CCACATACTTATTAGACCTAGCATGCATGACTTTACTAAAAACTTACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACTTATTAGACCTAGCATGCATGACTTTACTAAAAACTTACCCA  600

seq1  ACTATCACATTACCACAGTTACTACGTATATTTGGATGATCACAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCACATTACCACAGTTACTACGTATATTTGGATGATCACAAAATAC  650

seq1  ATACCAAAATCCCAGACATTATGAGTGAACCCTAGTTAAACATATCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAATCCCAGACATTATGAGTGAACCCTAGTTAAACATATCTTCT  700

seq1  ACAAAGAGGTACTCAGAAACCCCTTAAATTTAATTATTCCAAGGCTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGTACTCAGAAACCCCTTAAATTTAATTATTCCAAGGCTTGAT  750

seq1  TAGCTTTTCCTAAAACTTCACCTTTAACCTTTGTGGGAGTCCCATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTCCTAAAACTTCACCTTTAACCTTTGTGGGAGTCCCATATATA  800

seq1  ATATATTACTCTCAAAAGACAAAGCAGCCCTGTACAAGAACATACAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTACTCTCAAAAGACAAAGCAGCCCTGTACAAGAACATACAACCT  850

seq1  TCAAGTACCCCAT-GGCCTGCATCCTCTAGTAC-TTTGAAGAACATCACA  898
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TCAAGTACCCCATGGGCCTGCATCCTCTAGTACTTTTGAAGAACATCACA  900

seq1  CACATGATGGTTATTAGACTTGCTACCGTATGCCCTTTAGAAATGTGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATGGTTATTAGACTTGCTACCGTATGCCCTTTAGAAATGTGTGA  950

seq1  C-AAATGTGGATTGCAGACTTTCAGCAC-AGCTTCTGTCTGATTG-AATC  995
      | ||||||||| |||||||||||||||| |||||||||||||||| ||||
seq2  CAAAATGTGGA-TGCAGACTTTCAGCACAAGCTTCTGTCTGATTGAAATC  999

seq1  CATCTCAAATGG-CTGGGATTCTAATTCTTTGCTACATAATCTTCATCTT  1044
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTCAAATGGCCTGGGATTCTAATTCTTTGCTACATAATCTTCATCTT  1049

seq1  TGAAAATCAC-TGTCTCAAGCCATTTCCCATCACATCTCATGTGTTTTAT  1093
         ||||||| |||||| || ||||| |||||| ||||||||||||||||
seq2  --GAAATCACTTGTCTCCAGGCATTT-CCATCA-ATCTCATGTGTTTTAT  1095

seq1  ACCAGTCTCTGTAACAGCTTTCTTGCTTCCAGGTTTTTTTTTTTTCACTA  1143
      ||||||||||   ||||||| ||  ||||||||  |||||||||||||||
seq2  ACCAGTCTCTTGTACAGCTTCCTGCCTTCCAGG-CTTTTTTTTTTCACTA  1144

seq1  TTTTCTTTTTATTGACAGACCTTTCATTAAAGAGAAAATATGGTTACTCA  1193
        ||| |||||||| |||||  |||||  ||||||||||   ||||||||
seq2  --TTCCTTTTATTGGCAGAC--TTCAT--AAGAGAAAAT---GTTACTCA  1185

seq1  -CTAAA  1198
       |||||
seq2  CCTAAA  1191


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