BAC Information

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BAC

Clone NameB6Ng01-280M10
Chromosome5 (Build37)
Map Location 81,746,308 - 81,747,410
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M10.bB6Ng01-280M10.g
ACCGA080419GA080420
length7291,100
definitionB6Ng01-280M10.b B6Ng01-280M10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaaacctgataaacagcttcggtgaagtagctggatataaaat
aaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctg
agaaagaaattagggaaacaacacccttctcaatagtcacaaataatata
aaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataa
aaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgga
aagatctcccatgctcatggattggcaggatcaacattgtaaaaatggct
atcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc
aactcaactcttcaacgaattggaaggagcaatttgctaatttgtctgga
ataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaact
tctggcggaatcaccatgccagacctaaagctttactacagagcaattgt
gataaaaactgcatggtactggtatagagacagacaagtagaccaatgga
atagaattgaagacccagaaatgaacccacacacctatggttacttgatc
ttcgacaagggagctaaaaccatccagtggaagaaagacagcattttctt
ttttttttttttttttttttttttccattttttattaggaatttagctca
tttacatttccaatgctataccaaaagtc

gaattcttttggagacatgtgaagaaaagcttgaggttgtcaaaatcatt
aaatatttccaatcaatgtacttagatttttttcatataatagattatgt
aagcttaattttatataaagtcttatatgagcatatttggttataaacac
agcacaaattatgttagatgtgtaaacttttaaagaaagaataaattaat
aaacacaaaagacaaatagtaatgtatttgccagactgtacacaaagtat
ctttataggcagaatatggagtagttaaaatagaatcttcagagtcagca
ggtttataagttgtaaacctcagacccataaaactgagctacagattaac
tttgactcataaagttatgaataggcacctagaaaattgcatacctaaga
agagactgatcaaatgaggttcaaattgagaactacaggcacaatgtttt
tcttagttatttaatataaatttcctaaaataaggtatctttgagttatc
tcactttattcccattaaaacaaaaccaaaaataaaacaaacgcgttggt
tgaatccggctgtggatgtactgcacccctaactaaagaattcttttaaa
gaatgccctcacatgtgggtgtcttcaagtgtgagtggttgcctctgctg
tagtgtatttgcttgttgtatttactccatttttagatagggtctctaac
tgccaaggggcttgccatgtgggctgagctgacacctcaaagtcccatgt
gtctccatctgcatagagctaagataaaaatgcagaccagcacaatcatc
acctcttggattgtgagaatctgctcaggtttccatgcccacaatagtat
cttgtctgctgcctgagccatttccctccttttaagcattccaagaattt
tctggagggtctgagggtaaaaactactcactatatgggaaggaccccaa
ttggggtgaccacacagtttccaagcagtgttgtggaaagtgcttgtttg
aaacagtcagtgccaagaagagagtcttgttatgagggatcctgatgcag
tcagaatggatatgctagagtagtgggttcctaactactacttccatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81746308_81747410
seq2: B6Ng01-280M10.g_67_1166

seq1  GAATTCTTTTGGAGACATGTGAAGAAAAGCTTGAGGTTGTCAAAATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGAGACATGTGAAGAAAAGCTTGAGGTTGTCAAAATCATT  50

seq1  AAATATTTCCAATCAATGTACTTAGATTTTTTTCATATAATAGATTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCCAATCAATGTACTTAGATTTTTTTCATATAATAGATTATGT  100

seq1  AAGCTTAATTTTATATAAAGTCTTATATGAGCATATTTGGTTATAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAATTTTATATAAAGTCTTATATGAGCATATTTGGTTATAAACAC  150

seq1  AGCACAAATTATGTTAGATGTGTAAACTTTTAAAGAAAGAATAAATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATTATGTTAGATGTGTAAACTTTTAAAGAAAGAATAAATTAAT  200

seq1  AAACACAAAAGACAAATAGTAATGTATTTGCCAGACTGTACACAAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAAGACAAATAGTAATGTATTTGCCAGACTGTACACAAAGTAT  250

seq1  CTTTATAGGCAGAATATGGAGTAGTTAAAATAGAATCTTCAGAGTCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAGGCAGAATATGGAGTAGTTAAAATAGAATCTTCAGAGTCAGCA  300

seq1  GGTTTATAAGTTGTAAACCTCAGACCCATAAAACTGAGCTACAGATTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAGTTGTAAACCTCAGACCCATAAAACTGAGCTACAGATTAAC  350

seq1  TTTGACTCATAAAGTTATGAATAGGCACCTAGAAAATTGCATACCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCATAAAGTTATGAATAGGCACCTAGAAAATTGCATACCTAAGA  400

seq1  AGAGACTGATCAAATGAGGTTCAAATTGAGAACTACAGGCACAATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGATCAAATGAGGTTCAAATTGAGAACTACAGGCACAATGTTTT  450

seq1  TCTTAGTTATTTAATATAAATTTCCTAAAATAAGGTATCTTTGAGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTATTTAATATAAATTTCCTAAAATAAGGTATCTTTGAGTTATC  500

seq1  TCACTTTATTCCCATTAAAACAAAACCAAAAATAAAACAAACGCGTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATTCCCATTAAAACAAAACCAAAAATAAAACAAACGCGTTGGT  550

seq1  TGAATCCGGCTGTGGATGTACTGCACCCCTAACTAAAGAATTCTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCGGCTGTGGATGTACTGCACCCCTAACTAAAGAATTCTTTTAAA  600

seq1  GAATGCCCTCACATGTGGGTGTCTTCAAGTGTGAGTGGTTGCCTCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCTCACATGTGGGTGTCTTCAAGTGTGAGTGGTTGCCTCTGCTG  650

seq1  TAGTGTATTTGCTTGTTGTATTTACTCCATTTTTAGATAGGGTCTCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATTTGCTTGTTGTATTTACTCCATTTTTAGATAGGGTCTCTAAC  700

seq1  TGCCAAGGGGCTTGCCATGTGGGCTGAGCTGACACCTCAAAGTCCCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGGGCTTGCCATGTGGGCTGAGCTGACACCTCAAAGTCCCATGT  750

seq1  GTCTCCATCTGCATAGAGCTAAGATAAAAATGCAGACCAGCACAATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCTGCATAGAGCTAAGATAAAAATGCAGACCAGCACAATCATC  800

seq1  ACCTCTTGGATTGTGAGAATCTGCTCAGGTTTCCATGCCCACAATAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGGATTGTGAGAATCTGCTCAGGTTTCCATGCCCACAATAGTAT  850

seq1  CTTGTCTGCTGCCTGAGCCATTTCCCTCCTTTTAAGCATTCCAAGAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGCTGCCTGAGCCATTTCCCTCCTTTTAAGCATTCCAAGAATTT  900

seq1  TCTGGAGGGTCTTGAGGGTAAAAACTACTCACTATTATGGAAAGACCCCA  950
      ||||||||||| |||||||||||||||||||||||   |||| |||||||
seq2  TCTGGAGGGTC-TGAGGGTAAAAACTACTCACTATATGGGAAGGACCCCA  949

seq1  --TTGGGTGACACAACAGTTCCAAAGCAGTGTTGTGG-AAGTGCTTG-TT  996
        | |||||||   |||||| | |||||||||||||| ||||||||| ||
seq2  ATTGGGGTGACCACACAGTTTCCAAGCAGTGTTGTGGAAAGTGCTTGTTT  999

seq1  GAAACAGTCCAGTGGCAGAGAGGAGAAGTCTTGTAAGGAAGGGAT-CTGA  1045
      |||||||| ||||| || ||| ||| |||||||| | | |||||| ||||
seq2  GAAACAGT-CAGTGCCA-AGAAGAG-AGTCTTGTTATG-AGGGATCCTGA  1045

seq1  TGGCCAGTCAGAATGGATATGCTTAGAGTTAGTGGG-TCCTAACTACTAC  1094
      ||  |||||||||||||||||| ||||| ||||||| |||||||||||||
seq2  TG--CAGTCAGAATGGATATGC-TAGAG-TAGTGGGTTCCTAACTACTAC  1091

seq1  TCCCATTTC  1103
      | |||||||
seq2  TTCCATTTC  1100


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