BAC Information

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BAC

Clone NameB6Ng01-280M14
Chromosome5 (Build37)
Map Location 95,539,905 - 95,706,967
singlet/doubletdoublet
Overlap geneEG666133, LOC100041296, LOC100041253, LOC100041264
Upstream geneLOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125
Downstream geneEG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M14.bB6Ng01-280M14.g
ACCGA080427GA080428
length1,1931,117
definitionB6Ng01-280M14.b B6Ng01-280M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,705,781 - 95,706,967)(95,539,905 - 95,541,053)
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaaatgctggtattaaagatgtgcaccaccactgcctggag
ttaaatggaaattttctgttgaatgcaaatcctactcttaaaagaagact
aattaaccagttgtaggagggaaacaaaacaaactcaaagacaatttagc
agatctgagtgttagaaagttgtgttatacacttttgtttatttatattg
ttctgcttttagattataaattctttctgtttttctgggatttctgtgtc
tttgaatgtattctgtatttctttgggattttttttgctgttgtttttga
tgattctactttatatttttgatgggttggctctctttttctgttggctt
atttatattgtcctgttccaagttgtgtgtttttcttttcttttgatttt
ctgttgctctttttgtttatttgttcatttctctgttagtttttcaagca
gggtctcattgtatgttaaactgttctgtaactcacttgctaggccaggc
tggaggtggtcctgcctcttcctcccctgtcctggcagtacacttgtgtt
ctgccacacatgtttctggattctttaagtgcctgtttcttttctcagga
gagatacaaagggtgtggattgagatggaaaataatgtgggaatgacctc
agaggagttgggggagttgaaaccataatcataacacgtttgtatgaaaa
aaaatatttcagtaagggagacgcaaagaaaaggggagggagatatgact
gagtagttagagcactggcttctctaacagatacctcaggtacatatcct
agcttttgtgtgtcagctcctgtgtttttttccccatgctccttaactcc
tgaaccatctctttatcccatatctgattaacatggaaggagtgccagct
tagcacattgtctacagatatacacttgagataggaactagaacaggtgg
atggcttcatactacacaaatgaggcagagatagtattctttctttaatt
tgcgtgtagacagggtattgaatgaggacactattttcaccttaggcagc
aatacgatagcatgggggtctcattacagtggaacttcatatccagactt
cgtaaaagatgagggtagtacgtttggaacttgaaattgggag
gaattctccatgcccttcctgaaggaccttttgcagcacacagccaactg
gagcaagatgaatgtggaacaatatcctgcccctctggagtgctatgatg
aatttgctcaagtcactgtagaaggatttgcccaactttgtcaggatctc
atggatacactgagggcaataaggcagcccaagaacagctcctttgctac
agatatctgccacacatgtggggagcgctgggtctttgaccaggtggcta
aactttgtagttgctggcattaaaatgggaaagttctggatttgaataaa
caatgggcatgggacacatgtcttacctggggaactcagaacctgtggct
tctttctgacatgctcagatggttggaaacaaaaggatgttcaatgactg
atatttttgcaactgctcttgacatggggagcagttggacggactgtggg
aacaggggcctagtggagtcagaaacacagcttggcattgtcacatggct
tctccccagacagactaactagatgcttagttgtacacttataaacctgg
atgttctctctgtgtggtctttgactgttaccaacctcactaccaggttc
agggtcaggaaggttcaataggtggataaatggaaagacactggtatttt
atgagtgaagcaaaagtcttggtgaaattaacatgttacattaaaatgta
agttttcttgacacttctttcccttgtcctttgcctgggctacatgcaca
acaccacctgtgtggctgaacagttacatgcacaaaacatttaaactaat
gggagcaacagagacacacctactagaaagaaagattaaaaggatcacag
acaattaaaattttgtacattcagaccacaaggcacctttggacctatca
gaaatgcctaaagggagagacacataggacaaagtaaacagattccagtc
tggccttgtaatcttgacctttttgtcatgattaatgagatgactactga
ctcttttccatcagttatgcacgtaccctaaacctattctgtgactccaa
acttatgagtccctcttattaagtatgcataatgcagtctcttctaatta
accattactgccaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95705781_95706967
seq2: B6Ng01-280M14.b_46_1238 (reverse)

seq1  CTCCCAATTTTCAAGCTTCCAAAACTGTACTACC----TCACTTATCAAG  46
      ||||||| ||||||| |||||||   ||||||||    ||  |||  |||
seq2  CTCCCAA-TTTCAAG-TTCCAAA--CGTACTACCCTCATCTTTTACGAAG  46

seq1  TCTGGATACTGAGATCCTTTCCTGTAATGA-ACCCCCATGCTATTCGTTA  95
      ||||||||   || |||    ||||||||| |||||||||||| ||| ||
seq2  TCTGGATATGAAGTTCC---ACTGTAATGAGACCCCCATGCTA-TCG-TA  91

seq1  TGGCTGCCT-AGGTG-AAATA--GTCCTCATCTATAACCCTGTCTACACG  141
      | ||||||| ||||| |||||  ||||||||  |  ||||||||||||||
seq2  TTGCTGCCTAAGGTGAAAATAGTGTCCTCATTCAATACCCTGTCTACACG  141

seq1  CAAATTAAAGAA--GATACTATCTCTGCCTC-TTTGTGTAGTATG-AGCC  187
      ||||||||||||   |||||||||||||||| ||||||||||||| ||||
seq2  CAAATTAAAGAAAGAATACTATCTCTGCCTCATTTGTGTAGTATGAAGCC  191

seq1  TTCAACCTG-TCTAGTTCCTATCTCAGTGGTATTATCTGTAGACAATGTG  236
       || ||||| ||||||||||||||||   ||| |||||||||||||||||
seq2  ATCCACCTGTTCTAGTTCCTATCTCAAGTGTA-TATCTGTAGACAATGTG  240

seq1  CTAAGCTGGCACTCCTT-CATGTTAATCAGATATGGGATAAAGAGATGGT  285
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTAAGCTGGCACTCCTTCCATGTTAATCAGATATGGGATAAAGAGATGGT  290

seq1  TCAGGAGTT-AGGAGCATGGGGGAAAAAAACACAGGAGCTGACACACAAA  334
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  TCAGGAGTTAAGGAGCAT-GGGGAAAAAAACACAGGAGCTGACACACAAA  339

seq1  AGCTAGGATATGTACCTGAGGTATCTGTTAGAGAAGCCAGTGCTCTAACT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGATATGTACCTGAGGTATCTGTTAGAGAAGCCAGTGCTCTAACT  389

seq1  ACTCAGTCATATCTCCCTCCCCTTTTCTTTGCGTCTCCCTTACTGAAATA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCATATCTCCCTCCCCTTTTCTTTGCGTCTCCCTTACTGAAATA  439

seq1  TTTTTTTTCATAC-AACGTGTTATGATTATGGTTTCAACTCCCCCAACTC  483
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCATACAAACGTGTTATGATTATGGTTTCAACTCCCCCAACTC  489

seq1  CTCTGAGGTCATTCCCACATTATTTTCCATCTCAATCCACACCCTTTGTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTCATTCCCACATTATTTTCCATCTCAATCCACACCCTTTGTA  539

seq1  TCTCTCCTGAGAAAAGAAACAGGCACTTAAAGAATCCAGAAACATGTGTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGAGAAAAGAAACAGGCACTTAAAGAATCCAGAAACATGTGTG  589

seq1  GCAGAACACAAGTGTACTGCCAGGACAGGGGAGGAAGAGGCAGGACCACC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACACAAGTGTACTGCCAGGACAGGGGAGGAAGAGGCAGGACCACC  639

seq1  TCCAGCCTGGCCTAGCAAGTGAGTTACAGAACAGTTTAACATACAATGAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTGGCCTAGCAAGTGAGTTACAGAACAGTTTAACATACAATGAG  689

seq1  ACCCTGCTTGAAAAACTAACAGAGAAATGAACAAATAAACAAAAAGAGCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTGAAAAACTAACAGAGAAATGAACAAATAAACAAAAAGAGCA  739

seq1  ACAGAAAATCAAAAGAAAAGAAAAACACACAACTTGGAACAGGACAATAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATCAAAAGAAAAGAAAAACACACAACTTGGAACAGGACAATAT  789

seq1  AAATAAGCCAACAGAAAAAGAGAGCCAACCCATCAAAAATATAAAGTAGA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCCAACAGAAAAAGAGAGCCAACCCATCAAAAATATAAAGTAGA  839

seq1  ATCATCAAAAACAACAGCAAAAAAAATCCCAAAGAAATACAGAATACATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAAAACAACAGCAAAAAAAATCCCAAAGAAATACAGAATACATT  889

seq1  CAAAGACACAGAAATCCCAGAAAAACAGAAAGAATTTATAATCTAAAAGC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACAGAAATCCCAGAAAAACAGAAAGAATTTATAATCTAAAAGC  939

seq1  AGAACAATATAAATAAACAAAAGTGTATAACACAACTTTCTAACACTCAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATATAAATAAACAAAAGTGTATAACACAACTTTCTAACACTCAG  989

seq1  ATCTGCTAAATTGTCTTTGAGTTTGTTTTGTTTCCCTCCTACAACTGGTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAAATTGTCTTTGAGTTTGTTTTGTTTCCCTCCTACAACTGGTT  1039

seq1  AATTAGTCTTCTTTTAAGAGTAGGATTTGCATTCAACAGAAAATTTCCAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCTTCTTTTAAGAGTAGGATTTGCATTCAACAGAAAATTTCCAT  1089

seq1  TTAACTCCAGGCAGTGGTGGTGCACATCTTTAATACCAGCATTTGGGAGG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCAGGCAGTGGTGGTGCACATCTTTAATACCAGCATTTGGGAGG  1139

seq1  CAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGA  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGA  1189

seq1  ATTC  1187
      ||||
seq2  ATTC  1193

seq1: chr5_95539905_95541053
seq2: B6Ng01-280M14.g_66_1182

seq1  GAATTCTCCATGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGCCCTTCCTGAAGGACCTTTTGCAGCACACAGCCAACTG  50

seq1  GAGCAAGATGAATGTGGAACAATATCCTGCCCCTCTGGAGTGCTATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGATGAATGTGGAACAATATCCTGCCCCTCTGGAGTGCTATGATG  100

seq1  AATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTTTGTCAGGATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTCAAGTCACTGTAGAAGGATTTGCCCAACTTTGTCAGGATCTC  150

seq1  ATGGATACACTGAGGGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACACTGAGGGCAATAAGGCAGCCCAAGAACAGCTCCTTTGCTAC  200

seq1  AGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTGCCACACATGTGGGGAGCGCTGGGTCTTTGACCAGGTGGCTA  250

seq1  AACTTTGTAGTTGCTGGCATTAAAATGGGAAAGTTCTGGATTTGAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTAGTTGCTGGCATTAAAATGGGAAAGTTCTGGATTTGAATAAA  300

seq1  CAATGGGCATGGGACACATGTCTTACCTGGGGAACTCAGAACCTGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCATGGGACACATGTCTTACCTGGGGAACTCAGAACCTGTGGCT  350

seq1  TCTTTCTGACATGCTCAGATGGTTGGAAACAAAAGGATGTTCAATGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGACATGCTCAGATGGTTGGAAACAAAAGGATGTTCAATGACTG  400

seq1  ATATTTTTGCAACTGCTCTTGACATGGGGAGCAGTTGGACGGACTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGCAACTGCTCTTGACATGGGGAGCAGTTGGACGGACTGTGGG  450

seq1  AACAGGGGCCTAGTGGAGTCAGAAACACAGCTTGGCATTGTCACATGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGCCTAGTGGAGTCAGAAACACAGCTTGGCATTGTCACATGGCT  500

seq1  TCTCCCCAGACAGACTAACTAGATGCTTAGTTGTACACTTATAAACCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGACAGACTAACTAGATGCTTAGTTGTACACTTATAAACCTGG  550

seq1  ATGTTCTCTCTGTGTGGTCTTTGACTGTTACCAACCTCACTACCAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTCTGTGTGGTCTTTGACTGTTACCAACCTCACTACCAGGTTC  600

seq1  AGGGTCAGGAAGGTTCAATAGGTGGATAAATGGAAAGACACTGGTATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGGAAGGTTCAATAGGTGGATAAATGGAAAGACACTGGTATTTT  650

seq1  ATGAGTGAAGCAAAAGTCTTGGTGAAATTAACATGTTACATTAAAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGAAGCAAAAGTCTTGGTGAAATTAACATGTTACATTAAAATGTA  700

seq1  AGTTTTCTTGACACTTCTTTCCCTTGTCCTTTGCCTGGGCTACATGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTGACACTTCTTTCCCTTGTCCTTTGCCTGGGCTACATGCACA  750

seq1  ACACCACCTGTGTGGCTGAACAGTTACATGCACAAAACATTTAAACTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCTGTGTGGCTGAACAGTTACATGCACAAAACATTTAAACTAAT  800

seq1  GGGAGCAACAGAGACACACCTACTAGAAAGAAAGATTAAAAGGATCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAACAGAGACACACCTACTAGAAAGAAAGATTAAAAGGATCACAG  850

seq1  ACAATTAAAATTTTGTACATTCAGACCACAAGGCACC-TTGGACCTATCA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAATTAAAATTTTGTACATTCAGACCACAAGGCACCTTTGGACCTATCA  900

seq1  GAAATGCCTAAAGGGAAGAAGACAACATAGGACAAAGTAAACAAGATTTC  949
      ||||||||||||||||   |||| |||||||||||||||||| ||| |||
seq2  GAAATGCCTAAAGGGA--GAGAC-ACATAGGACAAAGTAAAC-AGA-TTC  945

seq1  CAGTCTGGCCTTGTAATCTTGACCTTTTTGTCATGATTTAATGAGATGAC  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGTCTGGCCTTGTAATCTTGACCTTTTTGTCATGA-TTAATGAGATGAC  994

seq1  TACTGGAACCTCTTTTTCCATCAGTTATGCCACGTACCCCTAAAACCTTA  1049
      |||||    ||| |||||||||||||||| |||||| |||||||  | ||
seq2  TACTG---ACTC-TTTTCCATCAGTTATG-CACGTA-CCCTAAA--CCTA  1036

seq1  TTCTGGTGGACTCCAAAACTTTATGAAGTTCCCTTCTTATTTAAAAGTAT  1099
      |||||   |||||||||   ||||| |||  || |||||||   ||||||
seq2  TTCTG--TGACTCCAAA--CTTATG-AGT--CCCTCTTATT---AAGTAT  1076

seq1  GCAATAAAATGCAGGTCCTTCTTCTACATAAACCATTTACTGTACAAAAA  1149
      ||   | |||||| |||  ||||||| || ||||| ||||||  ||||||
seq2  GC---ATAATGCA-GTC--TCTTCTA-ATTAACCA-TTACTG-CCAAAAA  1117