BAC Information

Click to search

BAC

Clone NameB6Ng01-281A14
Chromosome5 (Build37)
Map Location 59,758,133 - 59,759,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A14.bB6Ng01-281A14.g
ACCGA080617GA080618
length1,0951,094
definitionB6Ng01-281A14.b B6Ng01-281A14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
attttggtggcaatttgcttctgaaatccccaaagcataactcgcatatt
ttagaaattttattgttttagtcttagtcactcgtgttgagctctttgtt
atgttcttcccttttcccagaagaggtaaccttttctaatgagtagtaga
aactcaggcttcttgtatgttccaaaattaaagtttggtgtcaaagagaa
aatcccaaatgctgaatggatatcttgaattattctcttttaacattgta
atgtaaaatattacagacagggtcatttatacacaatagaaatgtgtttg
actcatgttctgaatgttggaaatcatagtctatgatatcaggacagaca
tttggcagagacttacatgctatgacacagtgggatgggtgggcatgcta
gcaaagaagaaaaaaagagaaaattggcctgaattcattttggtttttcg
aaaaagggtttctctggagagccctggctgtcctggaacttactctatag
agcaagctggctttgaactcagaaatccacctgcctctgcctcccaagtg
gtgggattaaaggtgtgcatcacaatgacaattacaactccatataataa
tagaaaataaactttcaatcataagatgacatatatgttctcttaaaatt
agtagcagaactctttgaaaattttattagaagcctgcactaatgcacga
taatgggctcttgtatgctacaattatacacaaaatttattaattcatat
ctgtttttataaattatgtttccatcacttaattcctttaggagaactat
atagcatttgcattttatgaacaaaaaaaacctttctgggaattcctacc
ttttactatttcaaatgcagatatttatatgctctattattccctaggac
tacatcatagtgtattagttgtgcattttttttaaagtttgtatgctact
gatatgtgttttttcaaagaaaaatacatttttaaacaagggccaagttt
atgttaatacttttgaatatccttggaccttctattaattgtataaggtg
aattaacattcatcttattcttactaatttattaatgaatacaga

gaattctctgcttagctgtgttctaattaggctaattgacttgttggtgt
agaacttcttgagtgttcgtaaattttgaatattagctctttttcaaatg
taaggttggtgaagaatatttcccactgtgtagattgtctatttgttcta
ttgccagtgtcctttgcctcactgaaagtttgtagtttgatagagtccca
tttattgttgagccattggtgttctattcaggaatttgtctctcaaacca
atgagttcaatgccattctccactttgtagaaatttttacactgagatct
ttgatccacctgcacttaagttttgggaagcctgttaaatgataatctat
ttttgtcaacttatatttaaacatacagttagaccagcaccatttgttga
agatgctttctgttttaaattgtttggatttgggatcaaaatcaagtgtc
catatgactgtgggcttatttctgggcctttgatttgattccactgataa
acatgtctgactctgtaccaatatcatggagtttttattcactattgctc
tgtagtaaagcttgaggtcagggatcgtgattcctcccaatgttctttta
aatgttcaggattattttggctattttgagtttttgtttttccacattaa
gttgagaattgctctttcagggtccatgagaaaacgtgttggaattttga
tagagattgcattgagtctctagagattgcttttggtaaggtggccattt
taattctgctgctcctacttatccaggaccataggagaactttctatctt
tctgtatctttttcaatttatttcttcaaggacttgaagtttatgtcata
cactctctcccttgcttggttagagttacaccaaggtatttttacattat
ttgtggctctttataagggtatggtttcctaatttctttctagtctgatt
atcatttttaagaggactagtgatttttttgagttaattttgtatccagc
acatccgcctaatggaatcattcagctgtagaggttgtcctagcatgact
ttttggggaatatacataatattattatatctcatcatcgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59758133_59759206
seq2: B6Ng01-281A14.b_60_1154

seq1  ATTTTGGTGGCAATTTGCTTCTGAAATCCCCAAAGCATAACTCGCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGGCAATTTGCTTCTGAAATCCCCAAAGCATAACTCGCATATT  50

seq1  TTAGAAATTTTATTGTTTTAGTCTTAGTCACTCGTGTTGAGCTCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTTTATTGTTTTAGTCTTAGTCACTCGTGTTGAGCTCTTTGTT  100

seq1  ATGTTCTTCCCTTTTCCCAGAAGAGGTAACCTTTTCTAATGAGTAGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTCCCTTTTCCCAGAAGAGGTAACCTTTTCTAATGAGTAGTAGA  150

seq1  AACTCAGGCTTCTTGTATGTTCCAAAATTAAAGTTTGGTGTCAAAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGCTTCTTGTATGTTCCAAAATTAAAGTTTGGTGTCAAAGAGAA  200

seq1  AATCCCAAATGCTGAATGGATATCTTGAATTATTCTCTTTTAACATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAATGCTGAATGGATATCTTGAATTATTCTCTTTTAACATTGTA  250

seq1  ATGTAAAATATTACAGACAGGGTCATTTATACACAATAGAAATGTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATATTACAGACAGGGTCATTTATACACAATAGAAATGTGTTTG  300

seq1  ACTCATGTTCTGAATGTTGGAAATCATAGTCTATGATATCAGGACAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTTCTGAATGTTGGAAATCATAGTCTATGATATCAGGACAGACA  350

seq1  TTTGGCAGAGACTTACATGCTATGACACAGTGGGATGGGTGGGCATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGAGACTTACATGCTATGACACAGTGGGATGGGTGGGCATGCTA  400

seq1  GCAAAGAAGAAAAAAAGAGAAAATTGGCCTGAATTCATTTTGGTTTTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGAAAAAAAGAGAAAATTGGCCTGAATTCATTTTGGTTTTTCG  450

seq1  AAAAAGGGTTTCTCTGGAGAGCCCTGGCTGTCCTGGAACTTACTCTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGTTTCTCTGGAGAGCCCTGGCTGTCCTGGAACTTACTCTATAG  500

seq1  AGCAAGCTGGCTTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTGGCTTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTG  550

seq1  GTGGGATTAAAGGTGTGCATCACAATGACAATTACAACTCCATATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTAAAGGTGTGCATCACAATGACAATTACAACTCCATATAATAA  600

seq1  TAGAAAATAAACTTTCAATCATAAGATGACATATATGTTCTCTTAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATAAACTTTCAATCATAAGATGACATATATGTTCTCTTAAAATT  650

seq1  AGTAGCAGAACTCTTTGAAAATTTTATTAGAAGCCTGCACTAATGCACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAACTCTTTGAAAATTTTATTAGAAGCCTGCACTAATGCACGA  700

seq1  TAATGGGCTCTTGTATGCTACAATTATACACAAAATTTATTAATTCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGCTCTTGTATGCTACAATTATACACAAAATTTATTAATTCATAT  750

seq1  CTGTTTTTATAAATTATGTTTCCATCACTTAATTCC-TTAGGAGAACTAT  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGTTTTTATAAATTATGTTTCCATCACTTAATTCCTTTAGGAGAACTAT  800

seq1  ATAGCATTTGCATTTTATGAACAAAAAAA--CCTTCT-GGAATTCCTACC  846
      |||||||||||||||||||||||||||||  | |||| ||||||||||||
seq2  ATAGCATTTGCATTTTATGAACAAAAAAAACCTTTCTGGGAATTCCTACC  850

seq1  -TTTACTA-TTCAAATGCAGATA-TTATATGCTCTATTATTCCCTAGGAC  893
       ||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTACTATTTCAAATGCAGATATTTATATGCTCTATTATTCCCTAGGAC  900

seq1  TACATCATAGTGTATTAGTTGTGCATTTTTTTT-AAGTTTGTATGCTACT  942
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACATCATAGTGTATTAGTTGTGCATTTTTTTTAAAGTTTGTATGCTACT  950

seq1  GATATGTG-TTTTTCAAAGAAAAATACA-TTTTAAAC-AGGGCCAAGTTT  989
      |||||||| ||||||||||||||||||| |||||||| ||||||||||||
seq2  GATATGTGTTTTTTCAAAGAAAAATACATTTTTAAACAAGGGCCAAGTTT  1000

seq1  ATG-TAATACTTT--GATATC--TTGACC-TCTATT-ATTGTATAA-GTG  1031
      ||| |||||||||   |||||  | |||| |||||| ||||||||| |||
seq2  ATGTTAATACTTTTGAATATCCTTGGACCTTCTATTAATTGTATAAGGTG  1050

seq1  -ATTAACATTCATCTTATTCTTACTAATTTATTATTG-ATACAGA  1074
       ||||||||||||||||||||||||||||||||| || |||||||
seq2  AATTAACATTCATCTTATTCTTACTAATTTATTAATGAATACAGA  1095


| Home | SequenceCutter | Blast | Download |