BAC Information

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BAC

Clone NameB6Ng01-281H13
Chromosome5 (Build37)5 (Build37)
Map Location 13,108,027 - 13,109,182129,311,990 - 129,312,659
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989
Downstream geneLOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H13.bB6Ng01-281H13.g
ACCGA080940GA080941
length1,162849
definitionB6Ng01-281H13.b B6Ng01-281H13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,108,027 - 13,109,182)(129,311,990 - 129,312,659)
sequence
gaattctagaatggagaaaagaaatgtgctcctatttgagtcaacagaat
gagaaatagcaagaataattacagtctgtattaaactagatgttctgtgt
tctatattaagtcttgctttctttatatttgctaaatctgggtattaatt
gttaccccattgtgccatacacctatctttagtatctttcataatttgtc
aattaaagaactgaacagattactaatgctcccattaaaaggtgcaagca
tcacttctttcttcattaccacaaaagaaaagggggcaacagaaagcaac
ataaaatgttaatttggcatattttccaaaatggcattgtatgtctcaaa
gtggacaaataagactttaatacttatgcataatatctgtcattcatggg
ttaccaaaaggaaacagatgaaagaaatatttgtctagttcataacatat
tttgctcctcttcaatctcatgataaaatttcatttgatatattacatgt
aaatagtatactcaagttcatttgcccaaacattcaaactgattatccaa
tatatttttaaaagccatatctacagactaactaataataacttgaaagt
tcttttgcttattaatattttagccggaacaagttgtatatccattccta
tcagagttagtaatttatctctaaaatcaaaatctcactgtaaacatgac
tgaattttattaatataatttctattaaaatcttataatatatttcatat
cagttttgtattctatcaccaactttcatggaaacctaacaggaaaagtt
gtgatcattttattgtgtttgtatatcatccacaatggaatgatatattt
gaatttaaaaaaaacaaacaaacaagtaaatggccaataccagattgtgt
agatacatactccttaatgtaaccatttatttgtgatgactatataggcc
aagtacaataagggggacattttagaaaaaaaacttatactctgtaaaat
ataactttaaaaggaaaactatgtaatggttctggtgatatggggatggg
ttaccaagcgacttacatacaatatcatcatgacttaggcatctgggttg
ttctgcatgtaccctaggtaggttctaggcaaaagactttctcatatact
atcagcaaggtg
gaattccatcaccacgttaacagctaagttttatgagagttcacacacac
acacacacacatgtatatgtatacatagatagatagatagatagatagat
agatagatagtagatagatagatgatagatagatagatgatagatgacag
atagatctatctatagatagataggtggatggatccatgggaacaccacc
aaaggttgaccactgctctctgcatgcatgtactcacacctgcatgtgca
tctttacccacacaaacatgcttcccccaacacagggagaatgggagtat
ccaaaccactctacgaatgagcaacctgggttgtccacagtcctgctgca
gtaggtccttatactctcagccacaggcaccctcccagaaccgttgggag
cacccatcacttacctttgtggatggaggtggctagtccattcatgtact
gagggaaaggcttgccaggggccaagggaacatccagcagggccactgag
ctgctgcccagcaggtcaatactcccagtgtgttgccggaacttttccag
gtcccgggacaacaagttaaactgctcactctgcacacggcattttctct
tccagctctcggaccttggactgcacagcagaggcagaacagcgatcaaa
cgaagggatagtcagtggtgcagatgtgctcagggcatgtgtgccctttt
aagaatgtgagtgtgcgtgcatatgataaggctgtgcgcttgtgtgcggc
agggtctgcttccaacttctacagaacatcagcgtctgggagcccagcct
cacaaggcagcctggttgttagccaccattgaggagccacatgtgccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13108027_13109182
seq2: B6Ng01-281H13.b_43_1204 (reverse)

seq1  CACC-TGCTGATAGTAATATGAGAAA-TCTTTTG-CTAGAA-CTACCTA-  45
      |||| |||||||||| |||||||||| ||||||| |||||| ||||||| 
seq2  CACCTTGCTGATAGT-ATATGAGAAAGTCTTTTGCCTAGAACCTACCTAG  49

seq1  GGTACATGCAG-ACAACCAAGATGCCTTAAGTCATGATGATATTGTAATT  94
      ||||||||||| |||||| ||||||| ||||||||||||||||||||  |
seq2  GGTACATGCAGAACAACCCAGATGCC-TAAGTCATGATGATATTGTA--T  96

seq1  GTAAGTCGCTTGGTAAACCAT-CCCATATCACAAGAACCATTACATAGTT  143
      |||||||||||||||| |||| |||||||||| |||||||||||||||||
seq2  GTAAGTCGCTTGGTAACCCATCCCCATATCACCAGAACCATTACATAGTT  146

seq1  TTCCTTTTAAAGTTATATTTTTACAGAGTATAAG-TTTTTTTCTAAAATG  192
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TTCCTTTTAAAGTTATA-TTTTACAGAGTATAAGTTTTTTTTCTAAAATG  195

seq1  T-CCCCTTATTGTACTTGGCCTATATAGTCATCACAAATAAATGGTTACA  241
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTATTGTACTTGGCCTATATAGTCATCACAAATAAATGGTTACA  245

seq1  TTAAGGAGTATGTATCTACACAATCTGGTATTGGCCATTTACTTGTTTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGTATGTATCTACACAATCTGGTATTGGCCATTTACTTGTTTGT  295

seq1  TTG-TTTTTTTAAATTC-AATATATCATTCCATTGTGGATGATATACAAA  339
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTAAATTCAAATATATCATTCCATTGTGGATGATATACAAA  345

seq1  CACAATAAAATGATCACAACTTTTCCTGTTAGGTTTCCATGAAAGTTGGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAATGATCACAACTTTTCCTGTTAGGTTTCCATGAAAGTTGGT  395

seq1  GATAGAATACAAAACTGATATGAAATATATTATAAGATTTTAATAGAAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATACAAAACTGATATGAAATATATTATAAGATTTTAATAGAAAT  445

seq1  TATATTAATAAAATTCAGTCATGTTTACAGTGAGATTTTGATTTTAGAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATAAAATTCAGTCATGTTTACAGTGAGATTTTGATTTTAGAGA  495

seq1  TAAATTACTAACTCTGATAGGAATGGATATACAACTTGTTCCGGCTAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTAACTCTGATAGGAATGGATATACAACTTGTTCCGGCTAAAA  545

seq1  TATTAATAAGCAAAAGAACTTTCAAGTTATTATTAGTTAGTCTGTAGATA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAAGCAAAAGAACTTTCAAGTTATTATTAGTTAGTCTGTAGATA  595

seq1  TGGCTTTTAAAAATATATTGGATAATCAGTTTGAATGTTTGGGCAAATGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTAAAAATATATTGGATAATCAGTTTGAATGTTTGGGCAAATGA  645

seq1  ACTTGAGTATACTATTTACATGTAATATATCAAATGAAATTTTATCATGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTATACTATTTACATGTAATATATCAAATGAAATTTTATCATGA  695

seq1  GATTGAAGAGGAGCAAAATATGTTATGAACTAGACAAATATTTCTTTCAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGAGGAGCAAAATATGTTATGAACTAGACAAATATTTCTTTCAT  745

seq1  CTGTTTCCTTTTGGTAACCCATGAATGACAGATATTATGCATAAGTATTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTTTTGGTAACCCATGAATGACAGATATTATGCATAAGTATTA  795

seq1  AAGTCTTATTTGTCCACTTTGAGACATACAATGCCATTTTGGAAAATATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTATTTGTCCACTTTGAGACATACAATGCCATTTTGGAAAATATG  845

seq1  CCAAATTAACATTTTATGTTGCTTTCTGTTGCCCCCTTTTCTTTTGTGGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAACATTTTATGTTGCTTTCTGTTGCCCCCTTTTCTTTTGTGGT  895

seq1  AATGAAGAAAGAAGTGATGCTTGCACCTTTTAATGGGAGCATTAGTAATC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAGAAGTGATGCTTGCACCTTTTAATGGGAGCATTAGTAATC  945

seq1  TGTTCAGTTCTTTAATTGACAAATTATGAAAGATACTAAAGATAGGTGTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTCTTTAATTGACAAATTATGAAAGATACTAAAGATAGGTGTA  995

seq1  TGGCACAATGGGGTAACAATTAATACCCAGATTTAGCAAATATAAAGAAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATGGGGTAACAATTAATACCCAGATTTAGCAAATATAAAGAAA  1045

seq1  GCAAGACTTAATATAGAACACAGAACATCTAGTTTAATACAGACTGTAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACTTAATATAGAACACAGAACATCTAGTTTAATACAGACTGTAAT  1095

seq1  TATTCTTGCTATTTCTCATTCTGTTGACTCAAATAGGAGCACATTTCTTT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTGCTATTTCTCATTCTGTTGACTCAAATAGGAGCACATTTCTTT  1145

seq1  TCTCCATTCTAGAATTC  1156
      |||||||||||||||||
seq2  TCTCCATTCTAGAATTC  1162

seq1: chr5_129311990_129312659
seq2: B6Ng01-281H13.g_236_912

seq1  AGGTGGATGGTTCCTGGGGAACACCACCAGAGGTTGACCTCTGCTCTCTA  50
      |||||||||| |||  ||||||||||||| ||||||||| ||||||||| 
seq2  AGGTGGATGGATCCATGGGAACACCACCAAAGGTTGACCACTGCTCTCTG  50

seq1  CATGCATGTACTCACACCTGCATGTGCATCTTTACCCACACAAACATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTACTCACACCTGCATGTGCATCTTTACCCACACAAACATGCT  100

seq1  TCCCCCAACACAGGGAGAATGGGAGTATCCAAACCACTCTACGAATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAACACAGGGAGAATGGGAGTATCCAAACCACTCTACGAATGAGC  150

seq1  AACCTGGGTTGTCCACAGTCCTGCTGCAGTAGGTCCTTATACTCTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGTTGTCCACAGTCCTGCTGCAGTAGGTCCTTATACTCTCAGCC  200

seq1  ACAGGCACCCTCCCAGAACCGTTGGGAGCACCCATCACTTACCTTTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACCCTCCCAGAACCGTTGGGAGCACCCATCACTTACCTTTGTGG  250

seq1  ATGGAGGTGGCTAGTCCATTCATGTACTGAGGGAAAGGCTTGCCAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTGGCTAGTCCATTCATGTACTGAGGGAAAGGCTTGCCAGGGGC  300

seq1  CAAGGGAACATCCAGCAGGGCCACTGAGCTGCTGCCCAGCAGGTCAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAACATCCAGCAGGGCCACTGAGCTGCTGCCCAGCAGGTCAATAC  350

seq1  TCCCAGTGTGTTGCCGGAACTTTTCCAGGTCCCGGGACAACAAGTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGTGTTGCCGGAACTTTTCCAGGTCCCGGGACAACAAGTTAAAC  400

seq1  TGCTCACTCTGCACACGGCA-TTTCTCTTCCAGCTCTCGGACCTTGGACT  449
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTCACTCTGCACACGGCATTTTCTCTTCCAGCTCTCGGACCTTGGACT  450

seq1  GCACAGCAGAGGCAGAACAGCGATC-AACGAAGGGATAGTCAGTGGTGCA  498
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCACAGCAGAGGCAGAACAGCGATCAAACGAAGGGATAGTCAGTGGTGCA  500

seq1  GATGTGCTCAGGGCATGTGTG-CCTTTTAAGAATGTGAGTGTGCGTGCAT  547
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGTGCTCAGGGCATGTGTGCCCTTTTAAGAATGTGAGTGTGCGTGCAT  550

seq1  ATGAT-AGGCTGTGCGCTTGTGTGTGGCAGGGTCTGCTTCC-ACCTCCAC  595
      ||||| |||||||||||||||||| |||||||||||||||| || || ||
seq2  ATGATAAGGCTGTGCGCTTGTGTGCGGCAGGGTCTGCTTCCAACTTCTAC  600

seq1  AGAACAGCAGCGTCTGGGAGCCCAGCCTCAC-AGGCAGCCTGGCTGTTGG  644
      |||||| |||||||||||||||||||||||| ||||||||||| |||| |
seq2  AGAACATCAGCGTCTGGGAGCCCAGCCTCACAAGGCAGCCTGGTTGTTAG  650

seq1  CCACCA-TGAGGAGCCACATGTGCCAA  670
      |||||| ||||||||||||||||||||
seq2  CCACCATTGAGGAGCCACATGTGCCAA  677