BAC Information

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BAC

Clone NameB6Ng01-281M15
Chromosome5 (Build37)
Map Location 65,433,214 - 65,532,565
singlet/doubletdoublet
Overlap geneTmem156, Klhl5
Upstream geneLOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik
Downstream geneWdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M15.bB6Ng01-281M15.g
ACCGA081176GA081177
length1,1541,129
definitionB6Ng01-281M15.b B6Ng01-281M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,433,214 - 65,434,362)(65,531,434 - 65,532,565)
sequence
gaattctataattcttaagtatagagcagaagaaataatctagatttata
gttttcacatcagagggatttgtacattaaccagaaatacgaaagaaaaa
caaatacctccaaggcattagattcttggacttagtctctcggctgtcag
tgctggggcggtggctcagcaggcagtgttgagaaagcgtaatgaccaga
gttagactccccagcatggatgtaaagtctgtgcgcacacctgtaatccc
agcagtgggaggtagagacaggaggatcaccggctagccagtgtaaccaa
ctgatgagctccaggttcagtgagtgttatggttcatatatgctctgccc
agggaatggctctattagaaggtgtggccctgttggagtaggggtatcat
tgtgggtgtggactttaagaccctcctcctagctgtcagaactctcagct
cctcctgcaccctgcctgcctggattcagccatgttcccaccttgatgat
aatggactgaacctctgaacctgtaagccagccccaactaaatgttgtcc
ttgtaagagttgccttggtcatggtgtctgctcacagcactgaaacccta
agacagtgagagacctggagtcaaaagaaaatgacaagaaaaacagtaga
ggaaaagagccaaggtacactgtggccaactcacgcgcccacacaggcac
aagggcctgcagaaatatgtgtgcacacgacacacatacctgaaagagga
gatcaaaacgcaaggcattgtaagtctgtaataccagcactctggaggca
aggcagagagattagaagttcaaggtcatcttcggccacatagcaagttc
aaggctaggctgggctacctgaggtcccatctttaaaacactacctagat
gtttgctgtacatctagtgtacagcaatagaattttaattataaaacaaa
gtttaaacaacattaaaaaaatagatttaaagtaagcgatattattgaca
ttttattatttatctttaatgaaaaaaaaattccaagtttgccaagtcga
gacatgaactgaaccgattctgtgacctattgaacctggtaattcaactg
ttagaagagaaaaccagttcatgaactaacagaacccgtgtcagggattt
ctct
gaattcatctgatgagcatggctccatagcctggcaggaagacaatgtct
gactactattggaagtcctgaaaagagaagacacacatttttaaaaatca
gcatgtgattaaagcctttccccactaagttcctttaaacccttcatgtg
caatgtaagaagcagagccatcaatcagtatcaggtaatcactgtctttt
ttttttttttctttttcctgtgcagggtctcaccgcacagccctggctcg
cctcaaatcccagccatctttgccgcagtgtaccaagtctggggttgcag
gcatgcctgcttactacttttgtgttttaaaaccaatgatgctttgggta
cttgtgtctcgtaagcacatgagtgaaggtgccaccaacagctgtagcta
cgcatattctttggttgccatttttagttacctttggtaaatgctgttat
tcagatgaaaaagagccaagctatagtcatactgatggatgtatctccta
atatatttagtggcgtcattgttactgtgtttgagataaaagttttcctt
tacttaaaaatgggttacttttcatagatgctatctataaaatacacagc
cacaaaaacagcattgtaaatgattccctcaaaaactcagacaagcaaca
atacatattttaaaagttgttagtttaaagtactgactggagtcctaggt
atgtgtgctggagtaaaaggacgtgaagtcagtaagttccttgccaagcg
ttacagagtctggtcatggatgtagagactgctgtctgatgagtgccttt
tcctcctgtgaaagctagaccgcatttatctcacacatagatgactctgt
ggggaggggcatgcacatattaatatcttaagagtaggagaaaaggcaca
gtatcctattttttgtaagccacaaattctctctaaaaacaaagtaaatg
aagtacttctttcttgggatctgatgtgtgtaccccactccccaggcatc
accgggaatgaacagatgactagccagtgagtaagctgaaaggtttggtc
atctatctgatggtaaacacttaatcatatcatttggaaggaacagtcat
tatttaatagtgtcactaagttattgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65433214_65434362
seq2: B6Ng01-281M15.b_41_1194

seq1  GAATTCTATAATTCTTAAGTATAGAGCAGAAGAAATAATCTAGATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATTCTTAAGTATAGAGCAGAAGAAATAATCTAGATTTATA  50

seq1  GTTTTCACATCAGAGGGATTTGTACATTAACCAGAAATACGAAAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACATCAGAGGGATTTGTACATTAACCAGAAATACGAAAGAAAAA  100

seq1  CAAATACCTCCAAGGCATTAGATTCTTGGACTTAGTCTCTCGGCTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTCCAAGGCATTAGATTCTTGGACTTAGTCTCTCGGCTGTCAG  150

seq1  TGCTGGGGCGGTGGCTCAGCAGGCAGTGTTGAGAAAGCGTAATGACCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCGGTGGCTCAGCAGGCAGTGTTGAGAAAGCGTAATGACCAGA  200

seq1  GTTAGACTCCCCAGCATGGATGTAAAGTCTGTGCGCACACCTGTAATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTCCCCAGCATGGATGTAAAGTCTGTGCGCACACCTGTAATCCC  250

seq1  AGCAGTGGGAGGTAGAGACAGGAGGATCACCGGCTAGCCAGTGTAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGAGGTAGAGACAGGAGGATCACCGGCTAGCCAGTGTAACCAA  300

seq1  CTGATGAGCTCCAGGTTCAGTGAGTGTTATGGTTCATATATGCTCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGCTCCAGGTTCAGTGAGTGTTATGGTTCATATATGCTCTGCCC  350

seq1  AGGGAATGGCTCTATTAGAAGGTGTGGCCCTGTTGGAGTAGGGGTATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGGCTCTATTAGAAGGTGTGGCCCTGTTGGAGTAGGGGTATCAT  400

seq1  TGTGGGTGTGGACTTTAAGACCCTCCTCCTAGCTGTCAGAACTCTCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGTGGACTTTAAGACCCTCCTCCTAGCTGTCAGAACTCTCAGCT  450

seq1  CCTCCTGCACCCTGCCTGCCTGGATTCAGCCATGTTCCCACCTTGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCACCCTGCCTGCCTGGATTCAGCCATGTTCCCACCTTGATGAT  500

seq1  AATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAACTAAATGTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAACTAAATGTTGTCC  550

seq1  TTGTAAGAGTTGCCTTGGTCATGGTGTCTGCTCACAGCACTGAAACCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAGTTGCCTTGGTCATGGTGTCTGCTCACAGCACTGAAACCCTA  600

seq1  AGACAGTGAGAGACCTGGAGTCAAAAGAAAATGACAAGAAAAACAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGAGAGACCTGGAGTCAAAAGAAAATGACAAGAAAAACAGTAGA  650

seq1  GGAAAAGAGCCAAGGTACACTGTGGCCAACTCACGCGCCCACACAGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGCCAAGGTACACTGTGGCCAACTCACGCGCCCACACAGGCAC  700

seq1  AAGGGCCTGCAGAAATATGTGTGCACACGACACACATACCTGAAAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTGCAGAAATATGTGTGCACACGACACACATACCTGAAAGAGGA  750

seq1  GATCAAAACGCAAGGCATTGTAAGTCTGTAATACCAGCACTCTGGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACGCAAGGCATTGTAAGTCTGTAATACCAGCACTCTGGAGGCA  800

seq1  AGGCAGAGAGATTAGAAGTTCAAGGTCATCTTCGGCCACATAGCAAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGATTAGAAGTTCAAGGTCATCTTCGGCCACATAGCAAGTTC  850

seq1  AAGGCTAGGCTGGGCTACCTGAGGTCCCATCTTTAAAACACTACCTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGGCTGGGCTACCTGAGGTCCCATCTTTAAAACACTACCTAGAT  900

seq1  GTTTGCTGTACATCTAGTGTACAGCAATAGAATTTTAATTATAAAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTACATCTAGTGTACAGCAATAGAATTTTAATTATAAAACAAA  950

seq1  GTTTAAACAACATTAAAAAAATAGATTTAAAGTAAGCGATATTATTGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACAACATTAAAAAAATAGATTTAAAGTAAGCGATATTATTGACA  1000

seq1  TTTTATTTATTTATCTTTTAATGAAAAAAAAA-TCCAAGGTTGCCAAGTC  1049
      ||||| ||||||||| |||||||||||||||| |||||| ||||||||||
seq2  TTTTA-TTATTTATC-TTTAATGAAAAAAAAATTCCAAGTTTGCCAAGTC  1048

seq1  GAGACATGAACTGAAACGATTCTGTGACCTAT--GACCTGTAAATTCAAC  1097
      ||||||||||||||| ||||||||||||||||   |||||  ||||||||
seq2  GAGACATGAACTGAACCGATTCTGTGACCTATTGAACCTGGTAATTCAAC  1098

seq1  TGTT-TAAGAGAGAA-CAG-TCATTGACT-ACAGACCCGTTGTCAGGGAT  1143
      ||||  |||||| || ||| ||||  ||| ||||| ||  ||||||||||
seq2  TGTTAGAAGAGAAAACCAGTTCATGAACTAACAGAACCCGTGTCAGGGAT  1148

seq1  TTCTCT  1149
      ||||||
seq2  TTCTCT  1154

seq1: chr5_65531434_65532565
seq2: B6Ng01-281M15.g_66_1194 (reverse)

seq1  AGACCATAACTTAGTGACAACTATTAAATAATGACTGTTCTTTTCAAATT  50
      |||| ||||||||||||| ||||||||||||||||||||| || ||||| 
seq2  AGACAATAACTTAGTGAC-ACTATTAAATAATGACTGTTCCTTCCAAAT-  48

seq1  GAATATTGATT-AGTGTTTACAATCAGAT-GATGACCCAAACCTTTCAGC  98
        ||| ||||| ||||||||| ||||||| ||||| ||||||||||||||
seq2  -GATA-TGATTAAGTGTTTACCATCAGATAGATGA-CCAAACCTTTCAGC  95

seq1  TTACTCACTGGCTAGTCATTCCTGTTCATT-CCGGTGATGCCTGGGGAGT  147
      |||||||||||||||||||  ||||||||| |||||||||||||||||||
seq2  TTACTCACTGGCTAGTCAT--CTGTTCATTCCCGGTGATGCCTGGGGAGT  143

seq1  GGGGTACACACATCAGATCCCCAAGAAAGAAGTACTTCATTTACTTTG-T  196
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  GGGGTACACACATCAGAT-CCCAAGAAAGAAGTACTTCATTTACTTTGTT  192

seq1  TTTAGAGAGAATTTGTGGCTTACAAAAAATAGGATACTGTGCCTTTTCTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAGAATTTGTGGCTTACAAAAAATAGGATACTGTGCCTTTTCTC  242

seq1  CTACTCTTAAGATATTAATATGTGCATGCCCCT-CCCACAGAGTCATCTA  295
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTACTCTTAAGATATTAATATGTGCATGCCCCTCCCCACAGAGTCATCTA  292

seq1  TGTGTGAGATAAATGCGGTCTAGCTTTCACAGGAGGAAAAGGCACTCATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGATAAATGCGGTCTAGCTTTCACAGGAGGAAAAGGCACTCATC  342

seq1  AGACAGCAGTCTCTACATCCATGACCAGACTCTGTAACGCTTGGCAAGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGTCTCTACATCCATGACCAGACTCTGTAACGCTTGGCAAGGA  392

seq1  ACTTACTGACTTCACGTCCTTTTACTCCAGCACACATACCTAGGACTCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGACTTCACGTCCTTTTACTCCAGCACACATACCTAGGACTCCA  442

seq1  GTCAGTACTTTAAACTAACAACTTTTAAAATATGTATTGTTGCTTGTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACTTTAAACTAACAACTTTTAAAATATGTATTGTTGCTTGTCTG  492

seq1  AGTTTTTGAGGGAATCATTTACAATGCTGTTTTTGTGGCTGTGTATTTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAGGGAATCATTTACAATGCTGTTTTTGTGGCTGTGTATTTTA  542

seq1  TAGATAGCATCTATGAAAAGTAACCCATTTTTAAGTAAAGGAAAACTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCATCTATGAAAAGTAACCCATTTTTAAGTAAAGGAAAACTTTT  592

seq1  ATCTCAAACACAGTAACAATGACGCCACTAAATATATTAGGAGATACATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACACAGTAACAATGACGCCACTAAATATATTAGGAGATACATC  642

seq1  CATCAGTATGACTATAGCTTGGCTCTTTTTCATCTGAATAACAGCATTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTATGACTATAGCTTGGCTCTTTTTCATCTGAATAACAGCATTTA  692

seq1  CCAAAGGTAACTAAAAATGGCAACCAAAGAATATGCGTAGCTACAGCTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTAACTAAAAATGGCAACCAAAGAATATGCGTAGCTACAGCTGT  742

seq1  TGGTGGCACCTTCACTCATGTGCTTACGAGACACAAGTACCCAAAGCATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACCTTCACTCATGTGCTTACGAGACACAAGTACCCAAAGCATC  792

seq1  ATTGGTTTTAAAACACAAAAGTAGTAAGCAGGCATGCCTGCAACCCCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTTAAAACACAAAAGTAGTAAGCAGGCATGCCTGCAACCCCAGA  842

seq1  CTTGGTACACTGCGGCAAAGATGGCTGGGATTTGAGGCGAGCCAGGGCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACACTGCGGCAAAGATGGCTGGGATTTGAGGCGAGCCAGGGCTG  892

seq1  TGCGGTGAGACCCTGCACAGGAAAAAGAAAAAAAAAAAAAAGACAGTGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTGAGACCCTGCACAGGAAAAAGAAAAAAAAAAAAAAGACAGTGAT  942

seq1  TACCTGATACTGATTGATGGCTCTGCTTCTTACATTGCACATGAAGGGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATACTGATTGATGGCTCTGCTTCTTACATTGCACATGAAGGGTT  992

seq1  TAAAGGAACTTAGTGGGGAAAGGCTTTAATCACATGCTGATTTTTAAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAACTTAGTGGGGAAAGGCTTTAATCACATGCTGATTTTTAAAAA  1042

seq1  TGTGTGTCTTCTCTTTTCAGGACTTCCAATAGTAGTCAGACATTGTCTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTTCTCTTTTCAGGACTTCCAATAGTAGTCAGACATTGTCTTC  1092

seq1  CTGCCAGGCTATGGAGCCATGCTCATCAGATGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCTATGGAGCCATGCTCATCAGATGAATTC  1129