BAC Information

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BAC

Clone NameB6Ng01-281O19
Chromosome5 (Build37)1 (Build37)
Map Location 115,804,836 - 115,805,0438,194,051 - 8,194,779
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMyo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
Downstream geneMsi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281O19.bB6Ng01-281O19.g
ACCGA081276GA081277
length471834
definitionB6Ng01-281O19.b B6Ng01-281O19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,804,836 - 115,805,043)(8,194,051 - 8,194,779)
sequence
tgcactaaaattatctagccttgttttgtgttgtgttgtgcttttttttg
ttttgtgttggtttggtttggtttagtttgctttgtttattttgttttgt
tttgtttggctttgttttgttttggtttggttggtttgggcttggtttgg
ttgggagactttttataatgaactattttattttattttattagatattt
tcattatttatatttcaagtgctatccttaaagttcactatgaccccccc
cccccgccttgctcccctacccacccattcccacttcttggccctggcct
tcccctgtactggggcatataaagtttgtaagacctaggggcctctcttc
ccaatgatggctgactaggccatcttttgatacatatgcaactagagaca
caagctccgagtgggtactggttagttcatattgttgttccacctatagg
gttgcataccccttcagctcc
gaattctatcctgcaggaaagattgctagaacaggaagtaaacaactcaa
aatgcattcaggaagtccctaaaattgaccatattcactaggccttgtcc
ttcccaacaatatataaagagtaaccaaagctaagagagagaatcagata
tgaacaagctgaaagagaactctcagacaagttgaggtgcttagaagagc
ctcagagcatcaagttgaacagcatggaagaagcagagacaagaccaatg
gcctagaagaagctgagatctacttatctatcaaaaacaaacaaacaaac
aaacaaacaaaaaaccccaatacattacagtctgttgacatgccttcaag
ctgtgaagtatgcacaatgttgccaggttttgtgaggtgttacctgtgtt
ggggttatttttggtgattatttttgattaatttctctttctgcaagtaa
tctctcacccatatccctgttagtaacaccaacaatgcacattgggtcaa
caagttaggttttgttagtatccttatttttgtctgtcattatttcccta
tataggataaatggaaatttgtctgtatctcttcaggatgagtgttacaa
catagtaatttgtagaatcatcaactgaacagatagagccaaagaaagac
gcaatcaagtaaggtatgtacttacttacaagttgatattagccacagtg
tacaagaaacccacactacactactcagacccgaagaagctaaacaagaa
gaaaagttgaatctcacttataagagggaataaaatagtcctaggaggca
gatgtagggagggaattggggtgagagagaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115804836_115805043
seq2: B6Ng01-281O19.b_312_521 (reverse)

seq1  GGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAA  50
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAAGGGGTATGCAACCCTATAGGTGGAACAACAATATGAACTAA  50

seq1  CCAGTACCC-CT-GGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGAT  98
      ||||||||| || |||||| |||||||||| |||||||||| || |||||
seq2  CCAGTACCCACTCGGAGCTTGTGTCTCTAGTTGCATATGTATCAAAAGAT  100

seq1  GGCCTTGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTT  148
      ||||| ||| ||||||||||||||||||||||||| |||||| |||||||
seq2  GGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTAGGTCTTACAAACTT  150

seq1  CATATGCCTCAATACAGGGGAACGCCAGGGCCAGGAGGTGGGAGTGGGTG  198
       ||||||| || |||||||||| |||||||||| || |||||| ||||||
seq2  TATATGCCCCAGTACAGGGGAAGGCCAGGGCCAAGAAGTGGGAATGGGTG  200

seq1  GGTAGGGGAG  208
      ||||||||||
seq2  GGTAGGGGAG  210

seq1: chr1_8194051_8194779
seq2: B6Ng01-281O19.g_173_902

seq1  CAACAATATATAAAGAGTAACCAAAGCTAAGAGAGAGAATCAGATATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATATATAAAGAGTAACCAAAGCTAAGAGAGAGAATCAGATATGAA  50

seq1  CAAGCTGAAAGAGAACTCTCAGACAAGTTGAGGTGCTTAGAAGAGCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAAAGAGAACTCTCAGACAAGTTGAGGTGCTTAGAAGAGCCTCA  100

seq1  GAGCATCAAGTTGAACAGCATGGAAGAAGCAGAGACAAGACCAATGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCAAGTTGAACAGCATGGAAGAAGCAGAGACAAGACCAATGGCCT  150

seq1  AGAAGAAGCTGAGATCTACTTATCTATCAAAAACAAACAAACAAACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGCTGAGATCTACTTATCTATCAAAAACAAACAAACAAACAAAC  200

seq1  AAACAAAAAACCCCAATACATTACAGTCTGTTGACATGCCTTCAAGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCCCAATACATTACAGTCTGTTGACATGCCTTCAAGCTGT  250

seq1  GAAGTATGCACAATGTTGCCAGGTTTTGTGAGGTGTTACCTGTGTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGCACAATGTTGCCAGGTTTTGTGAGGTGTTACCTGTGTTGGGG  300

seq1  TTATTTTTGGTGATTATTTTTGATTAATTTCTCTTTCTGCAAGTAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGGTGATTATTTTTGATTAATTTCTCTTTCTGCAAGTAATCTC  350

seq1  TCACCCATATCCCTGTTAGTAACACCAACAATGCACATTGGGTCAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATATCCCTGTTAGTAACACCAACAATGCACATTGGGTCAACAAG  400

seq1  TTAGGTTTTGTTAGTATCCTTATTTTTGTCTGTCATTATTTCCCTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTTGTTAGTATCCTTATTTTTGTCTGTCATTATTTCCCTATATA  450

seq1  GGATAAATGGAAATTTGTCTGTATCTCTTCAGGATGAGTGTTACAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATGGAAATTTGTCTGTATCTCTTCAGGATGAGTGTTACAACATA  500

seq1  GTAATTTGTAGAATCATCAACTGAACAGATAGAGCCAAAGAAAGACGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGTAGAATCATCAACTGAACAGATAGAGCCAAAGAAAGACGCAA  550

seq1  TCAAGTAAGGTATGTACTTACTTACAAGTTGATATTAGCCACAGTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAAGGTATGTACTTACTTACAAGTTGATATTAGCCACAGTGTACA  600

seq1  AGAAACCCACACTACACTACTCAGACCCGAAGAAGCTAAACAAGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCACACTACACTACTCAGACCCGAAGAAGCTAAACAAGAAGAAA  650

seq1  AGTTGAATCTCACTTATAAGAGGGAATAAAATAGTCCTAGGAGGCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATCTCACTTATAAGAGGGAATAAAATAGTCCTAGGAGGCAGATG  700

seq1  TAGGGAGGGAATT-GGGTGAGAGAGAAGAT  729
      ||||||||||||| ||||||||||||||||
seq2  TAGGGAGGGAATTGGGGTGAGAGAGAAGAT  730