BAC Information

Click to search

BAC

Clone NameB6Ng01-282B06
Chromosome5 (Build37)
Map Location 15,131,921 - 15,132,939
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282B06.bB6Ng01-282B06.g
ACCGA081390GA081391
length1,0771,098
definitionB6Ng01-282B06.b B6Ng01-282B06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcaatttgatgcagagagaacagtacaaagaatccgtgaaac
caagatcctgttctttgagacaatcaacaaggtagacttatgcttagcca
aattaactgaaaggtagagagacaatacccagaatagcaaaatcagaaat
gaaacaggagacataacaatggacactgaggtaattgaaagaatcactag
gtcttactgcagaagcctgtactgcaaaaaatagcaaaatccaaatgaaa
tgggtgacttataaacagctatcaattatcaaagttaaatgaagatctgg
taaagtaactaagaggcctataacccctaagaaaatagaaacagtcatca
aaagtcctccactccaaaaaagcccaagggcagaaagttgtagtgcagaa
ttctactagatattcaaaaaagagttagtgaaatactcctcaaatcattc
ataaagtagaaagagaagaaacatagctaaactcattctatgagttaata
gtcaccctgatacagaaaccacacaaagagtcaacaaaaaagaggaattc
agtccaatttctcttttttaaccacttcatactaatttacttatcttcat
agtaaggaagaatatgtcttccttgtgtatttaaaattatgagattagat
actgatattggacagaaggtaattgggttcataagaagtgatacataata
gaaaagaatatgttcatggatttggagtcaggactatgctgtgtattggt
tattgaaaattaatatcagagtgacacagttgtgtgtctttaggaagatg
actggtgggagacactgatcctaaaatgccttctgtattttagtctattt
tcctagaaaaacataggaaaaaagagtatattggggtacatccaggaaac
aggtctgggagccattaaatattcccagaggaaaagtttcacccagttgc
taaaagtgttttaccaggtgggatgaaagatatcctttcaatacaatttg
gtgtgaatggtgagcgaaagctttactatcatctctttcacttctctcta
cattggggtaactcaaggatccaaaac

gaattctaggtctgcaacaggggacagaacacctgaataaggaagatggt
ctcaagagtcactacttgcaaatcaatttttatttataagaaatagaatt
tttaaaaaataggttttaaaagttcaattaatatagagataaaggcaaaa
acaaacaatgaaatacaagaacaagaacatataacttctaaataacataa
caataactcaaagaacaaaaatgaaaatttaaaccaaaactctaaaggaa
aattattgttcagctgctttcgctttctgcacttttagcagcacagccct
ccagcctgctgctcctcttggacactaggtatcagtgcagccgtctcagt
tctctgccaagagacgttgtctgaagagaaaagggaacaacgcactgaat
cagccatggcttcctagtaaaggcctattcaccctaagaaaatgaattat
atggaagaagattcatctgaggaagattgtgggtgctggagatggtgctc
agcaggggcctcctggcctggcaactcattctgcaggatgctgtcttctt
cagctgtggccaatcccagctctcttgcagtttctgagacctgggagagg
aaggcagttactaagacacaggagtggaggagacaggcatggcagctgtg
aggctactgcctcctaccacctcaactgtacttgacagtcaacattaata
tttttaactgaagttattgatgttaaatctaaagacacgggcaaaatatt
caacaacagtcacaaaaacatggactgacaaagatcaactcaggctttct
atcagttccaaccaaaaacatggcaaaggaagagaccttcagtggattac
aggaagaaaggagaaagggcacaggacaccagatcaatgataatgaagaa
gcacttcatttgacatttgtactttggcttctaatccctccaaagggtgc
agacacatggggatgtcataagacctcttgcctggtctcctggtcttaag
gacccagatctcactcaaaacctctgcatagcatttccacctatcatgag
gacatggcaaagaatggtgaacatggttattcactggtcaccctgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15131921_15132939
seq2: B6Ng01-282B06.b_114_1124

seq1  GAGACAATCAACAAGGTAGACTTATGCTTAGCCAAATTAACTGAAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCAACAAGGTAGACTTATGCTTAGCCAAATTAACTGAAAGGTA  50

seq1  GAGAGACAATACCCAGAATAGCAAAATCAGAAATGAAACAGGAGACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAATACCCAGAATAGCAAAATCAGAAATGAAACAGGAGACATAA  100

seq1  CAATGGACACTGAGGTAATTGAAAGAATCACTAGGTCTTACTGCAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACACTGAGGTAATTGAAAGAATCACTAGGTCTTACTGCAGAAGC  150

seq1  CTGTACTGCAAAAAATAGCAAAATCCAAATGAAATGGGTGACTTATAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTACTGCAAAAAATAGCAAAATCCAAATGAAATGGGTGACTTATAAAC  200

seq1  AGCTATCAATTATCAAAGTTAAATGAAGATCTGGTAAAGTAACTAACAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTATCAATTATCAAAGTTAAATGAAGATCTGGTAAAGTAACTAAGAGG  250

seq1  CCTATAACCCCTAAGGAAATAGAAACAGTCATCAAAAGTCCTCCACTCCA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTATAACCCCTAAGAAAATAGAAACAGTCATCAAAAGTCCTCCACTCCA  300

seq1  AAAAAGCCCAAGGGCAGAAAGTTGTAGTGCAGAATTCTACTAGATATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCAAGGGCAGAAAGTTGTAGTGCAGAATTCTACTAGATATTCA  350

seq1  AAAAAGAGTTATTGAAATACTCCTCAAATTATTCATAAAGTAGTAACAGA  400
      ||||||||||| ||||||||||||||||| ||||||||||||| || |||
seq2  AAAAAGAGTTAGTGAAATACTCCTCAAATCATTCATAAAGTAGAAAGAGA  400

seq1  AGAAAAATAGCTAAACTCATTCTATGAGTTCATAGTCACCCTGATACAGA  450
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAACATAGCTAAACTCATTCTATGAGTTAATAGTCACCCTGATACAGA  450

seq1  AACCACACAAAGACTCAACAAAGAAAGAGGAATTCGGTCCAATTTCTCTT  500
      ||||||||||||| |||||||| |||||||||||| ||||||||||||||
seq2  AACCACACAAAGAGTCAACAAA-AAAGAGGAATTCAGTCCAATTTCTCTT  499

seq1  TTTTAACCACTTCATACTAATTTACTTATCTTCATAATAAGGAAGAATAT  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTAACCACTTCATACTAATTTACTTATCTTCATAGTAAGGAAGAATAT  549

seq1  GTCTTCCTTGTGTATTTAAAATTATGAGATTAGATACTCATATTGGACAG  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCTTCCTTGTGTATTTAAAATTATGAGATTAGATACTGATATTGGACAG  599

seq1  AAGGTAATTGGGTTCATAAGAAGTGATACATAATAGAAAAGAACATGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGGTAATTGGGTTCATAAGAAGTGATACATAATAGAAAAGAATATGTTC  649

seq1  ATGGATTTGGAGTCAGGACTATGCTGTGTATTGGTTATTGAAAATTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTGGAGTCAGGACTATGCTGTGTATTGGTTATTGAAAATTAATA  699

seq1  TCAGAGTGACACAGTTGTGTGTCTTTAGGAAGATGACTGGTGGGAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGACACAGTTGTGTGTCTTTAGGAAGATGACTGGTGGGAGACAC  749

seq1  TGATCCTAAAATGCCTTCTGTATTTTAGTCCAT----ACAGAAAAACATA  796
      |||||||||||||||||||||||||||||| ||      |||||||||||
seq2  TGATCCTAAAATGCCTTCTGTATTTTAGTCTATTTTCCTAGAAAAACATA  799

seq1  GGAAAAAAAGAATATATTGGAGTACATCCAGGAAACAGTTCTGGAAGCCA  846
      || |||||||| |||||||| ||||||||||||||||| ||||| |||||
seq2  GG-AAAAAAGAGTATATTGGGGTACATCCAGGAAACAGGTCTGGGAGCCA  848

seq1  TTAAATATTCCCAGAGGAAAAGTTTCAACCAGTTGCTAAAAGTGTTTTTA  896
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TTAAATATTCCCAGAGGAAAAGTTTCACCCAGTTGCTAAAAGTG-TTTTA  897

seq1  CCAGGTGGGATGAAAGATATCCTTTCAAATACAA-TTGGTGTGAAATGGG  945
      |||||||||||||||||||||||||| ||||||| ||||||||||   ||
seq2  CCAGGTGGGATGAAAGATATCCTTTC-AATACAATTTGGTGTGAA--TGG  944

seq1  TGAGCGAAAGCTTTACCTATTCACCCTCTTTCCACTTTCTCTCTACTTTG  995
      ||||||||||||||| ||| |||  |||||| ||| |||||||||| |||
seq2  TGAGCGAAAGCTTTA-CTA-TCA-TCTCTTT-CAC-TTCTCTCTACATTG  989

seq1  GGGTTACTCAAAGAATCCCAAAAC  1019
      |||| |||||| ||   |||||||
seq2  GGGTAACTCAAGGA--TCCAAAAC  1011


| Home | SequenceCutter | Blast | Download |