BAC Information

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BAC

Clone NameB6Ng01-282N10
Chromosome1 (Build37)5 (Build37)
Map Location 150,897,442 - 150,897,839107,067,079 - 107,068,212
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282N10.bB6Ng01-282N10.g
ACCGA081949GA081950
length1671,133
definitionB6Ng01-282N10.b B6Ng01-282N10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,897,442 - 150,897,839)(107,067,079 - 107,068,212)
sequence
ttttttattttaattatttatctgaatatatatatatatatatatatata
tatatatacacaaaatatacatatatgtgtatgtgcatatgtatatgtac
atgtgcatatatgtatatatgtgtatgcatgtgtatatatgtgtatatgt
atattgtgtatatatgt

gaattctgaacatcacaaccaactaaagcagaggtaggtacttttttaat
ggaatgggttggattcttagcatgtgctacatctgataacaaaaacagaa
cttggtgttgacttgctttttgtggtgtagacagctgatgatcagctgct
gccttcaaagtggagcaagactctgctgctagctgatctgcaggctgtcc
aggggttaatgaaacactaccttcattcatattggaagtctttgtggagg
aggagcatgagactggtccattaacaacagctcctgtgggcaagggaaag
ttttcagtaggaacagcaggagtgctggcagggagaaacaaagcagactg
gcctccacttaaggcttgttctgattgatcctctgacaattcctcagatc
gagtcaatgaactgtttttctgaaatgatgtctgacaatcttttggttta
tgaactccactgtctttctcagagataaaattgttgtcatcttggagttc
ttctttagcaccagtaatgtcggtgtttatcttcaaatcatccatattgt
tggcaagatcatttaacacctttagtctagaaaatggaaaacaaaaatgt
agatttgcatcaaaaaagtactattggaatgtatggaaaattggaagtat
acattttcattggtttaattttctactctttatatattgagatattaata
actttataggaattagaaaacatttcaaataatgaaccactttaaaaata
ttttcaaagcaaatattgctatttctacttcctagaaattaagtattata
catacacaaactaccaaggaaaggcagcatacacttacatacaatataaa
tgaatgcattacacactgaaaaaagtctaaaatatcatgcataattttat
aataaaaacaattccctggcttgaacagattccccaagacagttacagta
gaagaactggaattatcaaatattgtaagaactatttaatcacctgagct
cgtttcctgaagaacgtaacacacactttcagtaaacacgtgggtcaaat
atagtaattgccaatcaacatcaatggcctaccttaatataatataggta
attcttaactctaaagtatttagacctgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_150897442_150897839
seq2: B6Ng01-282N10.b_77_218 (reverse)

seq1  ACATATACAAATACACATACATATACACATACTCACATATATATATATTC  50
      ||||||    |||||||   ||||||| |||  |||||||||| |    |
seq2  ACATAT----ATACACA---ATATACATATA--CACATATATACA----C  37

seq1  ATATATATACATGTATACATATATATACAGATGTAAATATACACACACAT  100
      ||  ||| |||| |||||  |||||| || ||||| ||||||        
seq2  ATGCATACACATATATAC--ATATATGCACATGTACATATAC--------  77

seq1  ATATATGTACATACACACACATACACGTACA---CGTACACGTACACATA  147
        ||||| ||||    ||||||| | ||| |    ||  |  || | |||
seq2  --ATATGCACAT----ACACATATATGTATATTTTGTGTATATATATATA  121

seq1  CACATATACATAAGAGGATATCAGTTTGAAGTTTAGGTCATGGACAAACC  197
       | ||||| |||     ||||                             
seq2  TATATATATATATATATATAT-----------------------------  142

seq1  TGGAGAGAAAAAAAGGTAAGCAAAGGAGAAATATAATTACTTTATAATTA  247
                                                        
seq2  --------------------------------------------------  142

seq1  TAACTGTAAAAAATTAAAAATAAATAAACACAATTTATAAATGGCATAAG  297
                                                        
seq2  --------------------------------------------------  142

seq1  TGTTCAAAGGTACTAAAATAGCTAAGTGTGTCTGTGTGTGTGTATATATA  347
                                                        
seq2  --------------------------------------------------  142

seq1  TATATATGTGTGTGTGTGTATATATATATATATATATATATATATATATA  397
                                                        
seq2  --------------------------------------------------  142

seq1  T  398
       
seq2  -  142


seq1: chr5_107067079_107068212
seq2: B6Ng01-282N10.g_68_1200

seq1  GAATTCTGAACATCACAACCAACTAAAGCAGAGGTAGGTACTTTTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACATCACAACCAACTAAAGCAGAGGTAGGTACTTTTTTAAT  50

seq1  GGAATGGGTTGGATTCTTAGCATGTGCTACATCTGATAACAAAAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGTTGGATTCTTAGCATGTGCTACATCTGATAACAAAAACAGAA  100

seq1  CTTGGTGTTGACTTGCTTTTTGTGGTGTAGACAGCTGATGATCAGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGTTGACTTGCTTTTTGTGGTGTAGACAGCTGATGATCAGCTGCT  150

seq1  GCCTTCAAAGTGGAGCAAGACTCTGCTGCTAGCTGATCTGCAGGCTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAGTGGAGCAAGACTCTGCTGCTAGCTGATCTGCAGGCTGTCC  200

seq1  AGGGGTTAATGAAACACTACCTTCATTCATATTGGAAGTCTTTGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTAATGAAACACTACCTTCATTCATATTGGAAGTCTTTGTGGAGG  250

seq1  AGGAGCATGAGACTGGTCCATTAACAACAGCTCCTGTGGGCAAGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCATGAGACTGGTCCATTAACAACAGCTCCTGTGGGCAAGGGAAAG  300

seq1  TTTTCAGTAGGAACAGCAGGAGTGCTGGCAGGGAGAAACAAAGCAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTAGGAACAGCAGGAGTGCTGGCAGGGAGAAACAAAGCAGACTG  350

seq1  GCCTCCACTTAAGGCTTGTTCTGATTGATCCTCTGACAATTCCTCAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACTTAAGGCTTGTTCTGATTGATCCTCTGACAATTCCTCAGATC  400

seq1  GAGTCAATGAACTGTTTTTCTGAAATGATGTCTGACAATCTTTTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATGAACTGTTTTTCTGAAATGATGTCTGACAATCTTTTGGTTTA  450

seq1  TGAACTCCACTGTCTTTCTCAGAGATAAAATTGTTGTCATCTTGGAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCACTGTCTTTCTCAGAGATAAAATTGTTGTCATCTTGGAGTTC  500

seq1  TTCTTTAGCACCAGTAATGTCGGTGTTTATCTTCAAATCATCCATATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGCACCAGTAATGTCGGTGTTTATCTTCAAATCATCCATATTGT  550

seq1  TGGCAAGATCATTTAACACCTTTAGTCTAGAAAATGGAAAACAAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGATCATTTAACACCTTTAGTCTAGAAAATGGAAAACAAAAATGT  600

seq1  AGATTTGCATCAAAAAAGTACTATTGGAATGTATGGAAAATTGGAAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCATCAAAAAAGTACTATTGGAATGTATGGAAAATTGGAAGTAT  650

seq1  ACATTTTCATTGGTTTAATTTTCTACTCTTTATATATTGAGATATTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCATTGGTTTAATTTTCTACTCTTTATATATTGAGATATTAATA  700

seq1  ACTTTATAGGAATTAGAAAACATTTCAAATAATGAACCACTTTAAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAGGAATTAGAAAACATTTCAAATAATGAACCACTTTAAAAATA  750

seq1  TTTTCAAAGCAAATATTGCTATTTCTACTTCCTAGAAATTAAGTATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGCAAATATTGCTATTTCTACTTCCTAGAAATTAAGTATTATA  800

seq1  CATACACAAACTACCAAGGAAAGGCAGCATACACTTACATACAATATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAAACTACCAAGGAAAGGCAGCATACACTTACATACAATATAAA  850

seq1  TGAATGCATTACACACTGAAAAAAGTCTAAAATATCATGCATAATTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATTACACACTGAAAAAAGTCTAAAATATCATGCATAATTTTAT  900

seq1  AATAAAAACAATTCCCTGGCTTGAACAGATTCCCCAAGGACAGTTACAGT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATAAAAACAATTCCCTGGCTTGAACAGATTCCCCAA-GACAGTTACAGT  949

seq1  AGAAGAACTGGAATTATCAAATATTGTAAAGAACTATTTTATCACCTGAA  1000
      ||||||||||||||||||||||||||| ||||||||||| |||||||| |
seq2  AGAAGAACTGGAATTATCAAATATTGT-AAGAACTATTTAATCACCTG-A  997

seq1  GCTCGTTCCTGGAAGAAGGTAACACAACAC-TTCAGGGTAAACAACGTGG  1049
      ||||||| |  |||||| ||||||| |||| ||||  |||||| ||||||
seq2  GCTCGTTTCCTGAAGAACGTAACAC-ACACTTTCA--GTAAAC-ACGTGG  1043

seq1  GTCAAATATAGTAATTG-CAATCAACATCAATGGCTTAC--TTATAT-AT  1095
      ||||||||||||||||| ||||||||||||||||| |||  | |||| ||
seq2  GTCAAATATAGTAATTGCCAATCAACATCAATGGCCTACCTTAATATAAT  1093

seq1  ATA-GTAATTCTTACTTCTAAAATATTTAAGACTGTTTTG  1134
      ||| ||||||||||  |||||| ||||||   ||||||||
seq2  ATAGGTAATTCTTAACTCTAAAGTATTTAGACCTGTTTTG  1133


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