BAC Information

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BAC

Clone NameB6Ng01-283I03
Chromosome5 (Build37)
Map Location 151,856,763 - 151,962,461
singlet/doubletdoublet
Overlap geneStard13
Upstream geneRxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283I03.bB6Ng01-283I03.g
ACCGA082451GA082452
length1,095708
definitionB6Ng01-283I03.b B6Ng01-283I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,856,763 - 151,857,878)(151,961,760 - 151,962,461)
sequence
gaattccacagatcaagatatccaggcagattgctacttaatgtgttagt
tacttcattccaagtctgcagtgtctagaaaatgccacgtttagctatat
ttgggtgattctccacaaccagtcttaagaacatttattttccccgatct
ggcaagtatttcaaattgcatcacagtgcacaggaagaaagtaggcattg
ttaaaaggacaggaaaagagaaaggaagaaagaagtcaagctgcgaggca
ggtgcttattgaaaggggatacagcttcagtttgtttacatccgtacttc
tggaaggaggctccagactgtgtatacctcagagctgtgctgcactgggt
cacagtgccccgagggtgtattcttaagtgtgattcacaactatttatgt
catttgaaaggaattcttccccctttcccaaccccccccccccccccaag
cagaggagcatggaagagagtctacaaaagggatgttttagttgtactgc
ccagcccactccgttggcccactgtgtcctgtggctctttgtgagtctgt
acatgtgtacatcctggatgggcgccttctttgaattgttcagatctcaa
gtttcttcttttggaaaacactgtgatctttattatttcaaatctatctg
gggctttctagctgcaggctctgagccttctgactgagccgcctgcaggg
ggtcaggccgggtcattgggaaactattcattctgcttcattctgacaga
aacctcctgttctaccctcaccttccaggagaggtggggaaacagctctg
ggttctgtggactgtattggaagcctagaaaggaaagggctttcctaagc
ttggtaaatacaaaatgatttaaaaaaaccagaccagattctaggtacag
aaccctaagaatggcccagaaacgcagtcttccaagggacagcagcgagt
gatgacaaacaaactagagtttctggtgtctgactctagctgctctcatg
atgagtgggcaccctgacgttagatggtttctgagtgccagtcagcatga
ctggcacagttaagacaataggtctagatgtagtagtggagtcta
gaattccaaggcagttactattgaatctgtcacttctctatgtcctccca
taggctgagggatggatgggtagatggctatgatagatggatggatagat
ggggggacaaatggaattgagttatggatatgcatacagctatatctctc
tgtgtagtacttggcacccatcacacgctctattgaatgaacagaagcca
tgtgaagtcactgacctccaccgatttgtcacccttgctctgacctcact
ggtacttatttctatgcttcccttggctgttctgctgatggctttcagct
ctcttcctcccctcatcctgatgtttcccaagcctgagcccataacttcc
attttctgattttaagcggatgattctcgaatctatgtccataggtcaga
ccctataaatctcttccagttccagacttcctattgccttcatatgaggt
ctccagttacatagtcattgtagcttccaataactgaaatatatttattt
tctttctgtaaactattttctatttagagttttatttttcctaatttttt
gttaacagatttgtatttgcttaagtttatatatacagtcagtctttaag
gactaccatgttttttcttcaaaatgtattttggaatcaacatcaggatt
aaaatagtactttatttttactgaaagcattgttggtttaaattatagag
acttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_151856763_151857878
seq2: B6Ng01-283I03.b_44_1138

seq1  GAATTCCACAGATCAAGATATCCAGGCAGATTGCTACTTAATGTGTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGATCAAGATATCCAGGCAGATTGCTACTTAATGTGTTAGT  50

seq1  TACTTCATTCCAAGTCTGCAGTGTCTAGAAAATGCCACGTTTAGCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATTCCAAGTCTGCAGTGTCTAGAAAATGCCACGTTTAGCTATAT  100

seq1  TTGGGTGATTCTCCACAACCAGTCTTAAGAACATTTATTTTCCCCGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATTCTCCACAACCAGTCTTAAGAACATTTATTTTCCCCGATCT  150

seq1  GGCAAGTATTTCAAATTGCATCACAGTGCACAGGAAGAAAGTAGGCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTATTTCAAATTGCATCACAGTGCACAGGAAGAAAGTAGGCATTG  200

seq1  TTAAAAGGACAGGAAAAGAGAAAGGAAGAAAGAAGTCAAGCTGCGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGACAGGAAAAGAGAAAGGAAGAAAGAAGTCAAGCTGCGAGGCA  250

seq1  GGTGCTTATTGAAAGGGGATACAGCTTCAGTTTGTTTACATCCGTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTATTGAAAGGGGATACAGCTTCAGTTTGTTTACATCCGTACTTC  300

seq1  TGGAAGGAGGCTCCAGACTGTGTATACCTCAGAGCTGTGCTGCACTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGGCTCCAGACTGTGTATACCTCAGAGCTGTGCTGCACTGGGT  350

seq1  CACAGTGCCCCGAGGGTGTATTCTTAAGTGTGATTCACAACTATTTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCCCCGAGGGTGTATTCTTAAGTGTGATTCACAACTATTTATGT  400

seq1  CATTTGAAAGGAATTCTTCCCCCTTTCCCAACCCCCCCCCCCCCCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAGGAATTCTTCCCCCTTTCCCAACCCCCCCCCCCCCCCCAAG  450

seq1  CAGAGGAGCATGGAAGAGAGTCTACAAAAGGGATGTTTTAGTTGTACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGCATGGAAGAGAGTCTACAAAAGGGATGTTTTAGTTGTACTGC  500

seq1  CCAGCCCACTCCGTTGGCCCACTGTGTCCTGTGGCTCTTTGTGAGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCACTCCGTTGGCCCACTGTGTCCTGTGGCTCTTTGTGAGTCTGT  550

seq1  ACATGTGTACATCCTGGATGGGCGCCTTCTTTGAATTGTTCAGATCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTACATCCTGGATGGGCGCCTTCTTTGAATTGTTCAGATCTCAA  600

seq1  GTTTCTTCTTTTGGAAAACACTGTGATCTTTATTATTTCAAATCTATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTTTTGGAAAACACTGTGATCTTTATTATTTCAAATCTATCTG  650

seq1  GGGCTTTCTAGCTGCAGGCTCTGAGCCTTCTGACTGAGCCGCCTGCAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCTAGCTGCAGGCTCTGAGCCTTCTGACTGAGCCGCCTGCAGGG  700

seq1  GGTCAGGCCGGGTCATTGGGAAACTATTCATTCTGCTTCATTCTGACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGCCGGGTCATTGGGAAACTATTCATTCTGCTTCATTCTGACAGA  750

seq1  AACCTCCTGTTCTACCCTCACCTTCCAGGAGAGGT-GGGAAACAGCTCTG  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACCTCCTGTTCTACCCTCACCTTCCAGGAGAGGTGGGGAAACAGCTCTG  800

seq1  GGTTCTGTGGACTGTATTGGAAGCCTAG-AAGGAAAGGGCTTTCCTAAGC  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTCTGTGGACTGTATTGGAAGCCTAGAAAGGAAAGGGCTTTCCTAAGC  850

seq1  TTGGTAAATACAAAATGATTTAAAAAAACCAGACCAGATTCTAGGTACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAATACAAAATGATTTAAAAAAACCAGACCAGATTCTAGGTACAG  900

seq1  AA-CCTAAGAATGGCCCAAGAAACGCAGTCTTCCAAGGGACAGCAGCGAG  947
      || |||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  AACCCTAAGAATGGCCC-AGAAACGCAGTCTTCCAAGGGACAGCAGCGA-  948

seq1  GTGATGAACAAACAAACTTAGGAGTTTCTGTTGTCTGACTCTTAGCTGCT  997
      |||||| |||||||||||   ||||||||| |||||||||| ||||||| 
seq2  GTGATG-ACAAACAAACT--AGAGTTTCTGGTGTCTGACTC-TAGCTGC-  993

seq1  TCTCCATGAATGAAGTGGGGAACCCCTGACCGGTTTAGGATTGGGTTTCT  1047
      ||| |||| ||| |||||| |  |||||||  |||   |||  |||||||
seq2  TCT-CATG-ATG-AGTGGGCA--CCCTGAC--GTT--AGAT--GGTTTCT  1032

seq1  GAAGTGGCAGTCAGCAGTGACTGGGCACAG-TAAGACAATAGTTCTAAAG  1096
      | |||| ||||||||| ||||| ||||||| ||||||||||| |||  ||
seq2  G-AGTGCCAGTCAGCA-TGACT-GGCACAGTTAAGACAATAGGTCT--AG  1077

seq1  ATGTAGTAGTGTGGAGTCTA  1116
      ||||||||  ||||||||||
seq2  ATGTAGTA--GTGGAGTCTA  1095

seq1: chr5_151961760_151962461
seq2: B6Ng01-283I03.g_63_770 (reverse)

seq1  ACAGAAGTCTCTAT-ATTTAAACC-ACAATGCTTTCAGTAAAAATAAAGT  48
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ACAGAAGTCTCTATAATTTAAACCAACAATGCTTTCAGTAAAAATAAAGT  50

seq1  AC-AATTTAATCCTGATGTTGATTCC-AAATACATTTTGAAG-AAAAACA  95
      || | ||||||||||||||||||||| ||||||||||||||| |||||||
seq2  ACTATTTTAATCCTGATGTTGATTCCAAAATACATTTTGAAGAAAAAACA  100

seq1  TGGTAGTCCTTAAAGACTGACTGTATATATAAACTTAAGCAAATACAAAT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTCCTTAAAGACTGACTGTATATATAAACTTAAGCAAATACAAAT  150

seq1  CTGTTAACAAAAAATTAGGAAAAATAAAACTCTAAATAGAAAATAGTTTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACAAAAAATTAGGAAAAATAAAACTCTAAATAGAAAATAGTTTA  200

seq1  CAGAAAGAAAATAAATATA-TTCAGTTATTGGAAGCAACAATGACTATGT  244
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  CAGAAAGAAAATAAATATATTTCAGTTATTGGAAGCTACAATGACTATGT  250

seq1  AACTGGAGACCTCATATGAAGGCAATAGGAAGTCTGGAACTGGAAGAGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGACCTCATATGAAGGCAATAGGAAGTCTGGAACTGGAAGAGAT  300

seq1  TTATAGGGTCTGACCTATGGACATAGATTCGAGAATCATCCGCTTAAAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGTCTGACCTATGGACATAGATTCGAGAATCATCCGCTTAAAAT  350

seq1  CAGAAAATGGAAGTTATGGGCTCAGGCTTGGGAAACATCAGGATGAGGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATGGAAGTTATGGGCTCAGGCTTGGGAAACATCAGGATGAGGGG  400

seq1  AGGAAGAGAGCTGAAAGCCATCAGCAGAACAGCCAAGGGAAGCATAGAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGCTGAAAGCCATCAGCAGAACAGCCAAGGGAAGCATAGAAA  450

seq1  TAAGTACCAGTGAGGTCAGAGCAAGGGTGACAAATCGGTGGAGGTCAGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCAGTGAGGTCAGAGCAAGGGTGACAAATCGGTGGAGGTCAGTG  500

seq1  ACTTCACATGGCTTCTGTTCATTCAATAGAGCGTGTGATGGGTGCCAAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATGGCTTCTGTTCATTCAATAGAGCGTGTGATGGGTGCCAAGT  550

seq1  ACTACACAGAGAGATATAGCTGTATGCATATCCATAACTCAATTCCATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGAGAGATATAGCTGTATGCATATCCATAACTCAATTCCATTT  600

seq1  GTCCCCCCATCTATCCATCCATCTATCATAGCCATCTACCCATCCATCCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCATCTATCCATCCATCTATCATAGCCATCTACCCATCCATCCC  650

seq1  TCAGCCTATGGGAGGACATAGAGAAGTGACAGATTCAATAGTAACTGCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTATGGGAGGACATAGAGAAGTGACAGATTCAATAGTAACTGCCT  700

seq1  TGGAATTC  702
      ||||||||
seq2  TGGAATTC  708