BAC Information

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BAC

Clone NameB6Ng01-283I20
Chromosome5 (Build37)
Map Location 12,037,887 - 12,191,372
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283I20.bB6Ng01-283I20.g
ACCGA082485GA082486
length1,1111,174
definitionB6Ng01-283I20.b B6Ng01-283I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,190,238 - 12,191,372)(12,037,887 - 12,039,054)
sequence
gaattctagcatagttgaatattttcacatttgtctctaaatatccatca
aaatttatctctgtgaatctgatcataggggtattgttttacagttttat
gatccatttgttaacaggtgtgaaacaaggcacaatgaagagataaatat
gtatataaacatggtatatttgcattttcaccaatagttcttcacattta
agtaatcagtcaaaagctggcaaatggatagagaactgcactgacagatg
agagagaagtagctaaatattttatttagcatgcattattcagaacaaaa
gtgattttggcttaaggctagtatataacatttactaagctatgatcctt
tatactgagtcttgctttgtgggaagatttttttttttttttttgacacg
ggatcttctctgtagcttatactaacctgaaactcaaggtgagttcccct
gcttcctgagagtacagacaggaatggaccaagcctcagtgattcatctt
gactagtgatccttacctgaaatggcagaaacgctgtatatagtttttta
tttataaaaatcataatttctaaaggcatacttttataatattaagttaa
tatttccttgtgtatctgttcaccatttcaatgtttttttcccccacagt
ctttaatgaaatttgaaaggtattgcagagccaaactggcacttactgat
cgaatttgtttatgttactaactttactctgttggtaatgttggtggcca
ttcatcattgtttttgtataatacatatgttgctctcaatttcctgttaa
ctaaatttggaatctaaaactaattctgtcagcctctactaagttaccat
gtggcttaaaaataagacactaaatatgattttcaaatcagtgactatac
tttcttggattaaaagtaaataaatattaattaacatagggtcaaactgt
cagtctatactactttagaattttactacagtagacatttctatgtatat
aaattagatatactcattcgcaaatttagcatctgatcagggtgtatatt
tctattattcagtctccagtactaattcattaagagatgtttgttcttaa
atgcagtccaa
gaattcttctcagcctactgacagtgaaggtctccgtaacacactcttaa
taagtggctaccttcctctgcttctgaatttggatgctgttatctttcat
tagagatctttccacagctttaaaaaagaaactgagcacttagtcagatc
tagttattcccacctctgatccattacttcagagaaaagagatgttgttg
attaaaaatgaagaaagctaactatcaggatataatattaattactacca
atgaaacacatactgtgattacgatgcatatccaccaaatactccttgga
tttactttttctgttatttgtcaagattctgtagaatcaaagtttacttt
aactcaggaatgggtcaaccaaattggaaaactcaatttgaaagctttcc
aaacaaattttaagtgaatttcagagtaagtcagaaatttcaccctagtg
gttaatttaataataactataaacataaagttgttaatgagaatttaaaa
ttttggacaatttgaatgaaataaaaatggaaacttttgccgggcagatg
tgtcgcatgcctgtaatcccagcactttgaaggcagagacaggcagattt
ctgcattcgaggccagcctggtctacagagtgagttccaggacagccagg
gctaaacagagaaaccctgtcttgaaaaaccaaaaataaaaattaaaaaa
ataaggaaacttttgtagctattcttgtaattctaagcaaattccagctt
taaagtacattttttttataatatacctagaaataatttcaaatgggctg
aaaagttactgtaattcaaagactatcctcagtagattgtttgcaaatgg
gttataataataatgcatgatgccactggggcattctaatgaacaatgtt
cctctgaacaagggcatgttcctacaaaattatcaaagaaaaaaattatt
aaaacccaacaagctagccctgaaaaaatgctagctaatagatgcttgtc
taatattaacatgccctttgatgtagataatattatttttctcataaaaa
gttcaaaattaggtgggccgcctctgcagtccctgtgaccctctgtgagg
atttcattcagcttaacccgtaaagaagtattatttttacaccatgtgtc
taacccctcagcaatggtgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12190238_12191372
seq2: B6Ng01-283I20.b_44_1154 (reverse)

seq1  TTGGACTTTCATATTAAGAACAAACATCTCTTTAATTGAAATATAGGTAC  50
      |||||| | ||| |||||||||||||||||||  | |||| ||   ||||
seq2  TTGGAC-TGCAT-TTAAGAACAAACATCTCTT--AATGAATTA---GTAC  43

seq1  TGGAGACTGAATAATAGAAATATACA-CCTGATCAGAATGCTAAATTTTG  99
      |||||||||||||||||||||||||| ||||||||| |||||||| ||||
seq2  TGGAGACTGAATAATAGAAATATACACCCTGATCAG-ATGCTAAA-TTTG  91

seq1  CGAAATGAAGTATATCTAAATTTTATTATAACATTAAGGAAAATGTTCCT  149
      || |||| ||||||||||| || |||    ||||  ||  ||||||  ||
seq2  CG-AATG-AGTATATCTAATTTATAT----ACAT--AG--AAATGT--CT  129

seq1  ACTGTAGTAAAAATTCTAAAGTAGTATAAGACTTGACAGTTTGACCCTAT  199
      |||||||| |||||||||||||||||| |||| |||||||||||||||||
seq2  ACTGTAGT-AAAATTCTAAAGTAGTAT-AGAC-TGACAGTTTGACCCTAT  176

seq1  GTTAATTAATATTTTATTTACTTTTAATCCAAGAAAGTATAGTCACTGAT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAATA-TTTATTTACTTTTAATCCAAGAAAGTATAGTCACTGAT  225

seq1  TTGAAAATCATATTTAGTGTCTTATTTTTAAGCCACATGGTAACTTAGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCATATTTAGTGTCTTATTTTTAAGCCACATGGTAACTTAGTA  275

seq1  GAGGCTGACAGAATTAGTTTTAGATTCCAAATTTAGTTAACAGGAAATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGACAGAATTAGTTTTAGATTCCAAATTTAGTTAACAGGAAATTG  325

seq1  AGAGCAACATATGTATTATACAAAAACAATGATGAATGGCCACCAACATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACATATGTATTATACAAAAACAATGATGAATGGCCACCAACATT  375

seq1  ACCAACAGAGTAAAGTTAGTAACATAAACAAATTCGATCAGTAAGTGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGAGTAAAGTTAGTAACATAAACAAATTCGATCAGTAAGTGCCA  425

seq1  GTTTGGCTCTGCAATACCTTTCAAATTTCATTAAAGACTGTGGGGGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTCTGCAATACCTTTCAAATTTCATTAAAGACTGTGGGGGAAAA  475

seq1  AAACATTGAAATGGTGAACAGATACACAAGGAAATATTAACTTAATATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGAAATGGTGAACAGATACACAAGGAAATATTAACTTAATATTA  525

seq1  TAAAAGTATGCCTTTAGAAATTATGATTTTTATAAATAAAAAACTATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTATGCCTTTAGAAATTATGATTTTTATAAATAAAAAACTATATA  575

seq1  CAGCGTTTCTGCCATTTCAGGTAAGGATCACTAGTCAAGATGAATCACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTCTGCCATTTCAGGTAAGGATCACTAGTCAAGATGAATCACTG  625

seq1  AGGCTTGGTCCATTCCTGTCTGTACTCTCAGGAAGCAGGGGAACTCACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGTCCATTCCTGTCTGTACTCTCAGGAAGCAGGGGAACTCACCT  675

seq1  TGAGTTTCAGGTTAGTATAAGCTACAGAGAAGATCCCGTGTCAAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGGTTAGTATAAGCTACAGAGAAGATCCCGTGTCAAAAAAAA  725

seq1  AAAAAAAAATCTTCCCACAAAGCAAGACTCAGTATAAAGGATCATAGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCTTCCCACAAAGCAAGACTCAGTATAAAGGATCATAGCTT  775

seq1  AGTAAATGTTATATACTAGCCTTAAGCCAAAATCACTTTTGTTCTGAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGTTATATACTAGCCTTAAGCCAAAATCACTTTTGTTCTGAATA  825

seq1  ATGCATGCTAAATAAAATATTTAGCTACTTCTCTCTCATCTGTCAGTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTAAATAAAATATTTAGCTACTTCTCTCTCATCTGTCAGTGCA  875

seq1  GTTCTCTATCCATTTGCCAGCTTTTGACTGATTACTTAAATGTGAAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATCCATTTGCCAGCTTTTGACTGATTACTTAAATGTGAAGAAC  925

seq1  TATTGGTGAAAATGCAAATATACCATGTTTATATACATATTTATCTCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGAAAATGCAAATATACCATGTTTATATACATATTTATCTCTTC  975

seq1  ATTGTGCCTTGTTTCACACCTGTTAACAAATGGATCATAAAACTGTAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCTTGTTTCACACCTGTTAACAAATGGATCATAAAACTGTAAAA  1025

seq1  CAATACCCCTATGATCAGATTCACAGAGATAAATTTTGATGGATATTTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCCCTATGATCAGATTCACAGAGATAAATTTTGATGGATATTTAG  1075

seq1  AGACAAATGTGAAAATATTCAACTATGCTAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  AGACAAATGTGAAAATATTCAACTATGCTAGAATTC  1111

seq1: chr5_12037887_12039054
seq2: B6Ng01-283I20.g_65_1238

seq1  GAATTCTTCTCAGCCTACTGACAGTGAAGGTCTCCGTAACACACTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAGCCTACTGACAGTGAAGGTCTCCGTAACACACTCTTAA  50

seq1  TAAGTGGCTACCTTCCTCTGCTTCTGAATTTGGATGCTGTTATCTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGCTACCTTCCTCTGCTTCTGAATTTGGATGCTGTTATCTTTCAT  100

seq1  TAGAGATCTTTCCACAGCTTTAAAAAAGAAACTGAGCACTTAGTCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCTTTCCACAGCTTTAAAAAAGAAACTGAGCACTTAGTCAGATC  150

seq1  TAGTTATTCCCACCTCTGATCCATTACTTCAGAGAAAAGAGATGTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTCCCACCTCTGATCCATTACTTCAGAGAAAAGAGATGTTGTTG  200

seq1  ATTAAAAATGAAGAAAGCTAACTATCAGGATATAATATTAATTACTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATGAAGAAAGCTAACTATCAGGATATAATATTAATTACTACCA  250

seq1  ATGAAACACATACTGTGATTACGATGCATATCCACCAAATACTCCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACACATACTGTGATTACGATGCATATCCACCAAATACTCCTTGGA  300

seq1  TTTACTTTTTCTGTTATTTGTCAAGATTCTGTAGAATCAAAGTTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTCTGTTATTTGTCAAGATTCTGTAGAATCAAAGTTTACTTT  350

seq1  AACTCAGGAATGGGTCAACCAAATTGGAAAACTCAATTTGAAAGCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAATGGGTCAACCAAATTGGAAAACTCAATTTGAAAGCTTTCC  400

seq1  AAACAAATTTTAAGTGAATTTCAGAGTAAGTCAGAAATTTCACCCTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTTTAAGTGAATTTCAGAGTAAGTCAGAAATTTCACCCTAGTG  450

seq1  GTTAATTTAATAATAACTATAAACATAAAGTTGTTAATGAGAATTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTAATAATAACTATAAACATAAAGTTGTTAATGAGAATTTAAAA  500

seq1  TTTTGGACAATTTGAATGAAATAAAAATGGAAACTTTTGCCGGGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACAATTTGAATGAAATAAAAATGGAAACTTTTGCCGGGCAGATG  550

seq1  TGTCGCATGCCTGTAATCCCAGCACTTTGAAGGCAGAGACAGGCAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCATGCCTGTAATCCCAGCACTTTGAAGGCAGAGACAGGCAGATTT  600

seq1  CTGCATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG  650

seq1  GCTAAACAGAGAAACCCTGTCTTGAAAAACCAAAAATAAAAATTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACAGAGAAACCCTGTCTTGAAAAACCAAAAATAAAAATTAAAAAA  700

seq1  ATAAGGAAACTTTTGTAGCTATTCTTGTAATTCTAAGCAAATTCCAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAACTTTTGTAGCTATTCTTGTAATTCTAAGCAAATTCCAGCTT  750

seq1  TAAAGTACA-TTTTTTTATAATATACCTAGAAATAATTTCAAATGGGCTG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACATTTTTTTTATAATATACCTAGAAATAATTTCAAATGGGCTG  800

seq1  AAAAGTTACTGTAATTCAAAGACTATCCTCAGTAGATTGTTTGCAAATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACTGTAATTCAAAGACTATCCTCAGTAGATTGTTTGCAAATGG  850

seq1  GTTATAATAATAATGCATGATGCCACTGGGGCATTCTAATGAACAATGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATAATAATGCATGATGCCACTGGGGCATTCTAATGAACAATGTT  900

seq1  CCTCTGAACAAGGGCATGTTCCTACAAAATTATCAAAGAAAAAAATTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAACAAGGGCATGTTCCTACAAAATTATCAAAGAAAAAAATTATT  950

seq1  AAAACCCAACAAAGCTAGCCCTGAAAAAATGCTAGCTAATAGATGCTTGT  999
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAC-AAGCTAGCCCTGAAAAAATGCTAGCTAATAGATGCTTGT  999

seq1  CTAATATTTAACATGCCC-TTGATGTAGATAATATTA-TTTTCTCATTAA  1047
      |||||| ||||||||||| |||||||||||||||||| |||||||||  |
seq2  CTAATA-TTAACATGCCCTTTGATGTAGATAATATTATTTTTCTCAT--A  1046

seq1  AAAGGTTCAAAATTAAGGGTGGCG-CTCTGCAAGTCCTGTGA-ACTCTGT  1095
      ||| ||||||||||| | | | || |||||||   |||||||  ||||||
seq2  AAAAGTTCAAAATTAGGTGGGCCGCCTCTGCAGTCCCTGTGACCCTCTGT  1096

seq1  GAGGGATTTTCATTCAGTTTACCCCTTAAAAGGAAGTATTA-TTTTACA-  1143
      ||||   |||||||||| ||| ||| ||||  ||||||||| ||||||| 
seq2  GAGG--ATTTCATTCAGCTTAACCCGTAAA--GAAGTATTATTTTTACAC  1142

seq1  CATG----TCAACCCTCAGCA---GTGTGTTG  1168
      ||||    | | |||||||||   ||||||||
seq2  CATGTGTCTAACCCCTCAGCAATGGTGTGTTG  1174