BAC Information

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BAC

Clone NameB6Ng01-283N19
Chromosome5 (Build37)
Map Location 15,924,828 - 16,077,033
singlet/doubletdoublet
Overlap geneLOC668121, Hgf
Upstream geneLOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283N19.bB6Ng01-283N19.g
ACCGA082713GA082714
length1,0891,165
definitionB6Ng01-283N19.b B6Ng01-283N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,924,828 - 15,925,908)(16,075,863 - 16,077,033)
sequence
gaattcctagctgttcctgagcttctattctgcgggttttcgaagaatat
acacatttgcaaatccattgttagtgaaggctgtgttagatcacagatgc
tgcccagctagtaggggtcagccagtccttctatttattatctagtgcct
tctctaactgctgaggtcctagtatgtaacagccccaagacagagtgtga
aaacaatattcatctccagactaaattttatataaaatataaaaatatat
ttcagtgcctgtctagaatgagtcaagtctccatccacatgttccttctc
tagcaaggtactgttagaaaaaccacagataccaggagtgtagctcaatc
atagagccctccatagtcctgccagtcaatgactttgattcccagcaaca
caaaagcaatcccaccagaaattagctatccagagcactaatgtataaaa
agagctgctacttcagaaagagatcccagacagctaatatccttgagtag
tgtttaagcaagacctgaataattgagagccaagataattataaatgaga
aagatacttgaaatgggatccatactgaaaagctgagagataatcagggg
aaatctaagacatgaaactggagaaagtaggggagttggatcatgggata
tgtaaaatggactggttttaaaaatatattaattaagactattgcatggg
aaaacagatctgcagaatactgtttataattattatttaaatgttataca
tttttctagtgttcttgacataaaatttgtgacttcaaagaaagtagatg
gcccataagagattttgttgtattaaattttttatttgatttctatgtgg
aattacaaagtttgagggaaagtattataaaggacattgatacttctaat
tatttggaagaaaaacaaataaagtagaagcctattgcattttggactgc
tgtggtgggtcagaggggagcatataggaaggacagaatggttgaagagg
aaataactgtaagatgcatctttgtaattaaaaatggaatggagaaaata
ttgcaggctctggaaacaaagtagaatttgtggttcatt
gaattctacatgaatccaaagataaaagatctctcagtaaagatgtttca
aatgtgttttctttcctgtgacattctatttaggaaatggatatgctaac
tatcctgaactggtcatatgtgtggatcaaaatatcgcatgctacactta
aagttatgatatattaatcaaaaaggaaaataagaagaaaatcttttttt
aaaaatagagatgctaaaccacagaaggaatactgaaatcatagtccaag
caacattttgcaagggaaagctattgtcagagcactaaggaactttctga
ctttttcaacaaataaatcagtgatcaaaattaaatagtcaattctacaa
tattactaaacatgtgcaaggaaccacactagcattgtaagaattaagca
actgtaaagtatatctcaataaagttttttatacccttgcttcatcagca
ttttaaatagaagacatagaaataaagcattaggtcatgtggtcacgggg
tgtattgagatcaacctaatatatacacctaaaatatctgaaaatctaat
ataactctgtgacacagaagtatcctagcgcaagacaaaaggtgaaagag
tctttcaccttaggtcgtgtgactgacagaagctaggatgataattttga
gaggtgtaagaagaatcaatttttaaaagataagccatttttcttttttt
taccatagcacatcatttagaattttgtgtatatatcttgtgtttgtatt
attgcctaaaatatattttacttcattttttggcactttcccaaatgtta
taataaatttgtaacaggacacttctctagcagaaatgaatctgtcattt
gctttgtatatttgatgaagtaactcatcagtcaaagttatttaagaaat
tctcttgtaactatctattcagagaaagtagtcgtaatcattgtctcata
tggatacatcacctggctgatgtgagatgaatttccccagacagctattt
attaaaattattttacttatgacactagtgatttcagagactgagccaca
tgcagtgggctgcacaattttgtaccagatctccacatatacataatttc
atttaatggtttatgcaatccaacggtcaaataccgtagatcctggaatg
tgtgtgcctctctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15924828_15925908
seq2: B6Ng01-283N19.b_47_1135

seq1  GAATTCCTAGCTGTTCCTGAGCTTCTATTCTGCGGGTTTTCGAAGAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCTGTTCCTGAGCTTCTATTCTGCGGGTTTTCGAAGAATAT  50

seq1  ACACATTTGCAAATCCATTGTTAGTGAAGGCTGTGTTAGATCACAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTGCAAATCCATTGTTAGTGAAGGCTGTGTTAGATCACAGATGC  100

seq1  TGCCCAGCTAGTAGGGGTCAGCCAGTCCTTCTATTTATTATCTAGTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTAGTAGGGGTCAGCCAGTCCTTCTATTTATTATCTAGTGCCT  150

seq1  TCTCTAACTGCTGAGGTCCTAGTATGTAACAGCCCCAAGACAGAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACTGCTGAGGTCCTAGTATGTAACAGCCCCAAGACAGAGTGTGA  200

seq1  AAACAATATTCATCTCCAGACTAAATTTTATATAAAATATAAAAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATTCATCTCCAGACTAAATTTTATATAAAATATAAAAATATAT  250

seq1  TTCAGTGCCTGTCTAGAATGAGTCAAGTCTCCATCCACATGTTCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTGTCTAGAATGAGTCAAGTCTCCATCCACATGTTCCTTCTC  300

seq1  TAGCAAGGTACTGTTAGAAAAACCACAGATACCAGGAGTGTAGCTCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGTACTGTTAGAAAAACCACAGATACCAGGAGTGTAGCTCAATC  350

seq1  ATAGAGCCCTCCATAGTCCTGCCAGTCAATGACTTTGATTCCCAGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCCTCCATAGTCCTGCCAGTCAATGACTTTGATTCCCAGCAACA  400

seq1  CAAAAGCAATCCCACCAGAAATTAGCTATCCAGAGCACTAATGTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAATCCCACCAGAAATTAGCTATCCAGAGCACTAATGTATAAAA  450

seq1  AGAGCTGCTACTTCAGAAAGAGATCCCAGACAGCTAATATCCTTGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCTACTTCAGAAAGAGATCCCAGACAGCTAATATCCTTGAGTAG  500

seq1  TGTTTAAGCAAGACCTGAATAATTGAGAGCCAAGATAATTATAAATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGCAAGACCTGAATAATTGAGAGCCAAGATAATTATAAATGAGA  550

seq1  AAGATACTTGAAATGGGATCCATACTGAAAAGCTGAGAGATAATCAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTGAAATGGGATCCATACTGAAAAGCTGAGAGATAATCAGGGG  600

seq1  AAATCTAAGACATGAAACTGGAGAAAGTAGGGGAGTTGGATCATGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGACATGAAACTGGAGAAAGTAGGGGAGTTGGATCATGGGATA  650

seq1  TGTAAAATGGACTGGTTTTAAAAATATATTAATTAAGACTATTGCATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGGACTGGTTTTAAAAATATATTAATTAAGACTATTGCATGGG  700

seq1  AAAACAGATCTGCAGAATACTGTTTATAATTATTATTTAAATGTTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATCTGCAGAATACTGTTTATAATTATTATTTAAATGTTATACA  750

seq1  -TTTTCTAGTGTTCTTGACATAAAATTTGTGACTTCAAAGAAAGTAGATG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGTGTTCTTGACATAAAATTTGTGACTTCAAAGAAAGTAGATG  800

seq1  GCCCATAAGAGATTTTGTTGTATTAAATTTTTTATTTGATTTCTATGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAAGAGATTTTGTTGTATTAAATTTTTTATTTGATTTCTATGTGG  850

seq1  AATTACAAAGTTTGAGGGAAAGTATTATAAAGGACATTGATACTTCTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAAGTTTGAGGGAAAGTATTATAAAGGACATTGATACTTCTAAT  900

seq1  TATTTTGAAGAAAAACAAATAAAAGTAGAAGCCTA-TGCA-TTTGGACTG  947
      ||||| |||||||||||||| |||||||||||||| |||| |||||||||
seq2  TATTTGGAAGAAAAACAAAT-AAAGTAGAAGCCTATTGCATTTTGGACTG  949

seq1  CTGTGGTGGGTCAGA-GGGAGCATATAGGAA-GACAGAAGGGTTGAAGAG  995
      ||||||||||||||| ||||||||||||||| ||||||| ||||||||||
seq2  CTGTGGTGGGTCAGAGGGGAGCATATAGGAAGGACAGAATGGTTGAAGAG  999

seq1  GAAAT-ACTGTAGGATGCATCTTGTAAATTAAAAATGG-ATGGAGAAAAT  1043
      ||||| |||||| ||||||||||   |||||||||||| |||||||||||
seq2  GAAATAACTGTAAGATGCATCTTTGTAATTAAAAATGGAATGGAGAAAAT  1049

seq1  A-TGCAAGCTCTGGAGACAAAGTAG-ATATGTGGTTCATT  1081
      | |||| |||||||| ||||||||| || |||||||||||
seq2  ATTGCAGGCTCTGGAAACAAAGTAGAATTTGTGGTTCATT  1089

seq1: chr5_16075863_16077033
seq2: B6Ng01-283N19.g_66_1230 (reverse)

seq1  ACAGA-AGGCACACA-AATCAGGGATCTAC-GTATTTGCACATTTGGGAA  47
      ||||| ||||||||| | ||  |||||||| ||||||| ||  ||||  |
seq2  ACAGAGAGGCACACACATTCCAGGATCTACGGTATTTG-ACCGTTGG--A  47

seq1  TCCCATAAAACACTAAATTGGAAATATGTATATGTGGAGATCCTGGTACA  97
      |  |||||| || |||| || || ||||||||||||||||| ||||||||
seq2  TTGCATAAACCATTAAA-TGAAATTATGTATATGTGGAGAT-CTGGTACA  95

seq1  AAATTGTGCAGGCCCACTGCATGTGGCCTCAGTCTCTGGAATCACTAGTG  147
      |||||||||| ||||||||||||||| ||||||||||| |||||||||||
seq2  AAATTGTGCA-GCCCACTGCATGTGG-CTCAGTCTCTGAAATCACTAGTG  143

seq1  TCATAAGTAAAATAATTTTAATAAATAGCTGTCTGGGGAAATTCATTCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCATAAGTAAAATAATTTTAATAAATAGCTGTCTGGGGAAATTCA-TCTC  192

seq1  ACATCAGCCAGGTGATGTATCCATATGAGACAATGATTACGACTACTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCCAGGTGATGTATCCATATGAGACAATGATTACGACTACTTTC  242

seq1  TCTGAATAGATAGTTACAAGAGAATTTTCTTAAATAACTTTGACTGATGA  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGAATAGATAGTTACAAGAGAA-TTTCTTAAATAACTTTGACTGATGA  291

seq1  GTTACTTCATCAAATATACAAAGCAAATGACAGATTCATTTCTGCTAGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCATCAAATATACAAAGCAAATGACAGATTCATTTCTGCTAGAG  341

seq1  AAGTGTCCTGTTACAAATTTATTATAACATTTGGGAAAGTGCCAAAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCTGTTACAAATTTATTATAACATTTGGGAAAGTGCCAAAAAAT  391

seq1  GAAGTAAAATATATTTTAGGCAATAATACAAACACAAGATATATACACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAATATATTTTAGGCAATAATACAAACACAAGATATATACACAA  441

seq1  AATTCTAAATGATGTGCTATGGTAAAAAAAAGAAAAATGGCTTATCTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAATGATGTGCTATGGTAAAAAAAAGAAAAATGGCTTATCTTTT  491

seq1  AAAAATTGATTCTTCTTACACCTCTCAAAATTATCATCCTAGCTTCTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGATTCTTCTTACACCTCTCAAAATTATCATCCTAGCTTCTGTC  541

seq1  AGTCACACGACCTAAGGTGAAAGACTCTTTCACCTTTTGTCTTGCGCTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACGACCTAAGGTGAAAGACTCTTTCACCTTTTGTCTTGCGCTAG  591

seq1  GATACTTCTGTGTCACAGAGTTATATTAGATTTTCAGATATTTTAGGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCTGTGTCACAGAGTTATATTAGATTTTCAGATATTTTAGGTGT  641

seq1  ATATATTAGGTTGATCTCAATACACCCCGTGACCACATGACCTAATGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAGGTTGATCTCAATACACCCCGTGACCACATGACCTAATGCTT  691

seq1  TATTTCTATGTCTTCTATTTAAAATGCTGATGAAGCAAGGGTATAAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATGTCTTCTATTTAAAATGCTGATGAAGCAAGGGTATAAAAAA  741

seq1  CTTTATTGAGATATACTTTACAGTTGCTTAATTCTTACAATGCTAGTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGAGATATACTTTACAGTTGCTTAATTCTTACAATGCTAGTGTG  791

seq1  GTTCCTTGCACATGTTTAGTAATATTGTAGAATTGACTATTTAATTTTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGCACATGTTTAGTAATATTGTAGAATTGACTATTTAATTTTGA  841

seq1  TCACTGATTTATTTGTTGAAAAAGTCAGAAAGTTCCTTAGTGCTCTGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTTATTTGTTGAAAAAGTCAGAAAGTTCCTTAGTGCTCTGACA  891

seq1  ATAGCTTTCCCTTGCAAAATGTTGCTTGGACTATGATTTCAGTATTCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCCCTTGCAAAATGTTGCTTGGACTATGATTTCAGTATTCCTT  941

seq1  CTGTGGTTTAGCATCTCTATTTTTAAAAAAAGATTTTCTTCTTATTTTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTTTAGCATCTCTATTTTTAAAAAAAGATTTTCTTCTTATTTTCC  991

seq1  TTTTTGATTAATATATCATAACTTTAAGTGTAGCATGCGATATTTTGATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATTAATATATCATAACTTTAAGTGTAGCATGCGATATTTTGATC  1041

seq1  CACACATATGACCAGTTCAGGATAGTTAGCATATCCATTTCCTAAATAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATGACCAGTTCAGGATAGTTAGCATATCCATTTCCTAAATAGA  1091

seq1  ATGTCACAGGAAAGAAAACACATTTGAAACATCTTTACTGAGAGATCTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGGAAAGAAAACACATTTGAAACATCTTTACTGAGAGATCTTT  1141

seq1  TATCTTTGGATTCATGTAGAATTC  1171
      ||||||||||||||||||||||||
seq2  TATCTTTGGATTCATGTAGAATTC  1165