BAC Information

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BAC

Clone NameB6Ng01-284F23
Chromosome5 (Build37)
Map Location 31,528,050 - 31,660,819
singlet/doubletdoublet
Overlap geneENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr
Upstream geneGpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g
Downstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284F23.bB6Ng01-284F23.g
ACCGA083092GA083093
length2031,027
definitionB6Ng01-284F23.b B6Ng01-284F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,660,617 - 31,660,819)(31,528,050 - 31,529,075)
sequence
ttccacagtagtgaagcacaaaaggtgtatccattttcctcgtctgccct
ttcctgcatgtttgggactcagaacaatgacgctaacttttacctgcgtt
tgtctaggaatttcagaggagccatgagaggggtgtgtgtttgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtctgtgtgtgaacgtgtgtgtctgtgtgt
gtg
gaattcagaaatctgcctgcctctgcctcccaagtgctgggattacaggc
gtgcgccaccacgcccagcctaaaaatacatttttttaaaggtgccttgg
aaactcaagatcaccaaaaggcaacacactgcagattgagaaaacaattt
gaacaggaaagatgctaagggagtgtgctatggggaagggcaaacagcag
caagaaggccttccaagcctctcatgttttggcttttgagggggctggga
aatccagctttgacccttttttgtgtatctcaccctgaagacataacatt
actcataaaaatgttagtacggaaacttaacagcattgtgaccagtgctg
gggattgaactgatggctatacatgcaaagcattctgtctgttaggtgtc
aagacatgattggttaaaaaattaatacttgtttctcaagggaatagcag
ttttattagtatgttccttcttggtgtgaataaggtgaaagagtgattcg
gggaaggacacctcagtgactggatactggtagagtgcttctgtaagata
cacaaacatatgccttggcaaacataaacctgggcatgctgggcactagg
aaggtagaagtagaatggtcagaagttcaagtcctccttggctagctata
acaagtctagtctaacatgcaagcaatctagctgagaaaaggacttgggc
ctgaggagtgaagtccctgtcccccaagcattaggacctaagtatagatg
tgccagaatctacataattaaaatgaaaaacaaaacaaaacaaaaccaga
cacagtggtggagtgtttagacatgtgccagccatgagggatgagaggta
gagttagacggatccctgaaaggtttgctgactacctagctgggtttact
tggtcatgtacacacacatacacacactcacacacacacacactcacaca
cacacacacacacacacagagggaggagagaggaagtgagagacagagag
atagacattgaaggtcagagacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31660617_31660819
seq2: B6Ng01-284F23.b_52_254 (reverse)

seq1  CACACACACAGACACACACAGACACACACAGACACACACACACACACACA  50
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CACACACACAGACACACACGTTCACACACAGACACACACACACACACACA  50

seq1  CACACACACACAAACACACACCCCTCTCATGGCTCCTCTGAAATTCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAAACACACACCCCTCTCATGGCTCCTCTGAAATTCCTAG  100

seq1  ACAAACGCAGGTAAAAGTTAGCGTCATTGTTCTGAGTCCCAAACATGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACGCAGGTAAAAGTTAGCGTCATTGTTCTGAGTCCCAAACATGCAG  150

seq1  GAAAGGGCAGACGAGGAAAATGGATACACCTTTTGTGCTTCACTACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCAGACGAGGAAAATGGATACACCTTTTGTGCTTCACTACTGTG  200

seq1  GAA  203
      |||
seq2  GAA  203

seq1: chr5_31528050_31529075
seq2: B6Ng01-284F23.g_68_1094

seq1  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGC  50

seq1  GTGCGCCACCACGCCCAGCCTAAAAATACATTTTTTTAAAGGTGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCCACCACGCCCAGCCTAAAAATACATTTTTTTAAAGGTGCCTTGG  100

seq1  AAACTCAAGATCACCAAAAGGCAACACACTGCAGATTGAGAAAACAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGATCACCAAAAGGCAACACACTGCAGATTGAGAAAACAATTT  150

seq1  GAACAGGAAAGATGCTAAGGGAGTGTGCTATGGGGAAGGGCAAACAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAAAGATGCTAAGGGAGTGTGCTATGGGGAAGGGCAAACAGCAG  200

seq1  CAAGAAGGCCTTCCAAGCCTCTCATGTTTTGGCTTTTGAGGGGGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGCCTTCCAAGCCTCTCATGTTTTGGCTTTTGAGGGGGCTGGGA  250

seq1  AATCCAGCTTTGACCCTTTTTTGTGTATCTCACCCTGAAGACATAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCTTTGACCCTTTTTTGTGTATCTCACCCTGAAGACATAACATT  300

seq1  ACTCATAAAAATGTTAGTACGGAAACTTAACAGCATTGTGACCAGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAAAATGTTAGTACGGAAACTTAACAGCATTGTGACCAGTGCTG  350

seq1  GGGATTGAACTGATGGCTATACATGCAAAGCATTCTGTCTGTTAGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGAACTGATGGCTATACATGCAAAGCATTCTGTCTGTTAGGTGTC  400

seq1  AAGACATGATTGGTTAAAAAATTAATACTTGTTTCTCAAGGGAATAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGATTGGTTAAAAAATTAATACTTGTTTCTCAAGGGAATAGCAG  450

seq1  TTTTATTAGTATGTTCCTTCTTGGTGTGAATAAGGTGAAAGAGTGATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAGTATGTTCCTTCTTGGTGTGAATAAGGTGAAAGAGTGATTCG  500

seq1  GGGAAGGACACCTCAGTGACTGGATACTGGTAGAGTGCTTCTGTAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGACACCTCAGTGACTGGATACTGGTAGAGTGCTTCTGTAAGATA  550

seq1  CACAAACATATGCCTTGGCAAACATAAACCTGGGCATGCTGGGCACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATATGCCTTGGCAAACATAAACCTGGGCATGCTGGGCACTAGG  600

seq1  AAGGTAGAAGTAGAATGGTCAGAAGTTCAAGTCCTCCTTGGCTAGCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAAGTAGAATGGTCAGAAGTTCAAGTCCTCCTTGGCTAGCTATA  650

seq1  ACAAGTCTAGTCTAACATGCAAGCAATCTAGCTGAGAAAAGGACTTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTAGTCTAACATGCAAGCAATCTAGCTGAGAAAAGGACTTGGGC  700

seq1  CTGAGGAGTGAAGTCCCTGTCCCCCAAGCATTAGGACCTAAGTATAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGTGAAGTCCCTGTCCCCCAAGCATTAGGACCTAAGTATAGATG  750

seq1  TGCCAGAATCTACATAATTAAAATGAAAAACAAAACAAAACAAAACCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATCTACATAATTAAAATGAAAAACAAAACAAAACAAAACCAGA  800

seq1  CACAGTGGTGGAGTGTTTAGACATGTGCCAGCCATGAGGGATGAGAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGTGGAGTGTTTAGACATGTGCCAGCCATGAGGGATGAGAGGTA  850

seq1  GAGTTAGACGGATCCCTG-AAGGTTTGCTGACTACCTAGCTGGGTTTACT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGTTAGACGGATCCCTGAAAGGTTTGCTGACTACCTAGCTGGGTTTACT  900

seq1  TGGTCATGTACACACACACACACACACACACACACACACACACACACACA  949
      |||||||||||||||||| |||||||| ||||||||||||||| ||||||
seq2  TGGTCATGTACACACACATACACACACTCACACACACACACACTCACACA  950

seq1  CACACACACACACACACAGAGGGA-GAGAGAGAAAGTGAGAGACAGAGAG  998
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CACACACACACACACACAGAGGGAGGAGAGAGGAAGTGAGAGACAGAGAG  1000

seq1  ATAGACATTGAAAGTCAGAGACCAGAGA  1026
      |||||||||||| |||||||| ||||||
seq2  ATAGACATTGAAGGTCAGAGA-CAGAGA  1027