BAC Information

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BAC

Clone NameB6Ng01-284I15
Chromosome5 (Build37)
Map Location 67,835,845 - 67,972,052
singlet/doubletdoublet
Overlap geneC330024D21Rik
Upstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938
Downstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284I15.bB6Ng01-284I15.g
ACCGA083214GA083215
length3331,194
definitionB6Ng01-284I15.b B6Ng01-284I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,835,845 - 67,836,177)(67,970,892 - 67,972,052)
sequence
catgagtctgtacagcaaccattggtggtacttggtgacaagtgaaccca
gctgtattctcagggtttcccagaggaagaagacaggaatccataggccg
agagataggtaggcagatttgacacggttttattggcagtttatgatgga
acaacagagggcttagcgtgttttgttaaggaaattagaagataaattct
ggtccccaaagcctgcgctgtgctcaaaccagtccacttagggtttgagt
cacgtgattacttgttatagattcccaaacccatggcagcttgcaagcct
gaccagtggccaggggtgggggtggggtgggga
gaattccatacaaatcatccctaggtgctctcatgtgcacctctccctcc
catccacaaatacctcaattacaagaacctgtggctatgtctcccttggc
tgcaggtgagtctcacttccatctcttaaggacatagacgtctgtgtaag
taaatacagagaaacatactttaaaactcaagtacaaaatttaacaaacc
aactatgaattttgaagtagcaaagtatattcctggagggtctatattta
tctgtcaccagcacttggaggtaggagttgaaagtcactttgacaatgtt
tctgtatctgagcgtcagggaacagcgtggcgccatctgttggtgaattc
ttgtttactagtctttttcatggagggtggtgaggttttctttcatccca
tcagactagaaactcacttcctattgagagattactgtagtgtggttaca
attagaaggtggtggtgacggccaatcaagacttcatacaagaagactga
catttatgctttattcccatgcttcagtattttaccaaatcatcttgatg
ggctataattcttattttagagaactgcacacttcctgtttcttatttca
atcaacgtatttgtaaatctattcacaaagatactgtgggttaaaacaaa
cacaagaactcctttagactcattggatatcagcaagatgatttatttag
gtcaaaagtttaataaagaacaaaaaatagaagcaacttaaatttcccat
tgaattaaaaaaaaatccttcctgtgtgcctcattccctaacagctccac
tctactcctgtcccaggcaaagtttcttagaatagttttataattgatgt
ttctaaggcttaacttgaattccttttctgtgtctcccaactcccagccc
taatcatatacttaaaaccaaacaaggccacaacagattagtgtccaggg
gttgttaaatctaccattttccctgtcacttaggaccctccccccttccc
cttctgcaggcccagcttcccctcctgggctgaacaccattttttttttc
cacaaatgccaccttcactctcctggatggcctcccccacacagcccatc
gaacttgggagtcaagtggcacgccaattcgtctccttactgcctaatcc
tactgatcacacttcacaagttcagtctctcgatatgtttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67835845_67836177
seq2: B6Ng01-284I15.b_51_383

seq1  CATGAGTCTGTACAGCAACCATTGGTGGTACTTGGTGACAAGTGAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCTGTACAGCAACCATTGGTGGTACTTGGTGACAAGTGAACCCA  50

seq1  GCTGTATTCTCAGGGTTTCCCAGAGGAAGAAGACAGGAATCCATAGGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTCTCAGGGTTTCCCAGAGGAAGAAGACAGGAATCCATAGGCCG  100

seq1  AGAGATAGGTAGGCAGATTTGACACGGTTTTATTGGCAGTTTATGATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGTAGGCAGATTTGACACGGTTTTATTGGCAGTTTATGATGGA  150

seq1  ACAACAGAGGGCTTAGCGTGTTTTGTTAAGGAAATTAGAAGATAAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGGGCTTAGCGTGTTTTGTTAAGGAAATTAGAAGATAAATTCT  200

seq1  GGTCCCCAAAGCCTGCGCTGTGCTCAAACCAGTCCACTTAGGGTTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAAAGCCTGCGCTGTGCTCAAACCAGTCCACTTAGGGTTTGAGT  250

seq1  CACGTGATTACTTGTTATAGATTCCCAAACCCATGGCAGCTTGCAAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGATTACTTGTTATAGATTCCCAAACCCATGGCAGCTTGCAAGCCT  300

seq1  GACCAGTGGCCAGGGGTGGGGGTGGGGTGGGGA  333
      |||||||||||||||||||||||||||||||||
seq2  GACCAGTGGCCAGGGGTGGGGGTGGGGTGGGGA  333

seq1: chr5_67970892_67972052
seq2: B6Ng01-284I15.g_67_1260 (reverse)

seq1  AGGGAAGGAAATATCGA-AGACTG-ACTTGTG-AGTGTGATCAGGAAGGA  47
      ||||||  | ||||||| |||||| ||||||| |||||||||| | ||||
seq2  AGGGAA--ACATATCGAGAGACTGAACTTGTGAAGTGTGATCA-GTAGGA  47

seq1  CTAGGCAGTAAGGAGAGGAA-TGGCGTGCACATGGACT-CCAAG-TCGAT  94
       ||||||||||||||| ||| ||||||||   | |||| ||||| |||||
seq2  TTAGGCAGTAAGGAGACGAATTGGCGTGCCACTTGACTCCCAAGTTCGAT  97

seq1  -GGCTGTGT-GGGGAGG-CAACCAGGAGAGTGAA-GTGGCAATTGTGGAA  140
       |||||||| ||||||| || ||||||||||||| |||||| ||||||||
seq2  GGGCTGTGTGGGGGAGGCCATCCAGGAGAGTGAAGGTGGCATTTGTGGAA  147

seq1  AAAAAAA--TGTGTTCAGCC----AGAGGGAGCT-GGCCTGCAGAAGGG-  182
      |||||||   ||||||||||    || || |||| |||||||||||||| 
seq2  AAAAAAAATGGTGTTCAGCCCAGGAGGGGAAGCTGGGCCTGCAGAAGGGG  197

seq1  -AAGGGGGAGGGTCCT-AGTGACAGG--AAATGGTAGATTTAACA--CCC  226
       | ||||||||||||| |||||||||  |||||||||||||||||  |||
seq2  AAGGGGGGAGGGTCCTAAGTGACAGGGAAAATGGTAGATTTAACAACCCC  247

seq1  TGGACACT-ATCTG-TGTGG-CTTG-TTGGTTTT-AGTATATG-TTTGGG  270
      |||||||| ||||| ||||| |||| |||||||| |||||||| || |||
seq2  TGGACACTAATCTGTTGTGGCCTTGTTTGGTTTTAAGTATATGATTAGGG  297

seq1  CT-GGAGTT-GGAGACACAG-AAAGGAATTCAAG-TAAGCCTTAG-AACA  315
      || |||||| |||||||||| ||||||||||||| |||||||||| ||||
seq2  CTGGGAGTTGGGAGACACAGAAAAGGAATTCAAGTTAAGCCTTAGAAACA  347

seq1  TCAATTAT-AAACTATTCTAAGAAACTTTGCCTGGGACAGGAGTAGAGTG  364
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTATAAAACTATTCTAAGAAACTTTGCCTGGGACAGGAGTAGAGTG  397

seq1  GAGCTGTTAGGGAATGAGGCACACAGGAAGGATTTTTTTTTAATTCAATG  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTAGGGAATGAGGCACACAGGAAGGATTTTTTTTTAATTCAATG  447

seq1  GGAAATTTAAGTTGCTTCTATTTTTTGTTCTTTATTAAACTTTTGACCTA  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTAAGTTGCTTCTATTTTTTGTTCTTTATTAAACTTTTGACCTA  497

seq1  AATAAATCATCTTGCTGATATCCAATGAGTCTAAAGGAGTTCTTGTGTTT  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCATCTTGCTGATATCCAATGAGTCTAAAGGAGTTCTTGTGTTT  547

seq1  GTTTTAACCCACAGTATCTTTGTGAATAGATTTACAAATACGTTGATTGA  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACCCACAGTATCTTTGTGAATAGATTTACAAATACGTTGATTGA  597

seq1  AATAAGAAACAGGAAGTGTGCAGTTCTCTAAAATAAGAATTATAGCCCAT  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAACAGGAAGTGTGCAGTTCTCTAAAATAAGAATTATAGCCCAT  647

seq1  CAAGATGATTTGGTAAAATACTGAAGCATGGGAATAAAGCATAAATGTCA  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGATTTGGTAAAATACTGAAGCATGGGAATAAAGCATAAATGTCA  697

seq1  GTCTTCTTGTATGAAGTCTTGATTGGCCGTCACCACCACCTTCTAATTGT  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTGTATGAAGTCTTGATTGGCCGTCACCACCACCTTCTAATTGT  747

seq1  AACCACACTACAGTAATCTCTCAATAGGAAGTGAGTTTCTAGTCTGATGG  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTACAGTAATCTCTCAATAGGAAGTGAGTTTCTAGTCTGATGG  797

seq1  GATGAAAGAAAACCTCACCACCCTCCATGAAAAAGACTAGTAAACAAGAA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGAAAACCTCACCACCCTCCATGAAAAAGACTAGTAAACAAGAA  847

seq1  TTCACCAACAGATGGCGCCACGCTGTTCCCTGACGCTCAGATACAGAAAC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAACAGATGGCGCCACGCTGTTCCCTGACGCTCAGATACAGAAAC  897

seq1  ATTGTCAAAGTGACTTTCAACTCCTACCTCCAAGTGCTGGTGACAGATAA  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAAAGTGACTTTCAACTCCTACCTCCAAGTGCTGGTGACAGATAA  947

seq1  ATATAGACCCTCCAGGAATATACTTTGCTACTTCAAAATTCATAGTTGGT  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACCCTCCAGGAATATACTTTGCTACTTCAAAATTCATAGTTGGT  997

seq1  TTGTTAAATTTTGTACTTGAGTTTTAAAGTATGTTTCTCTGTATTTACTT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATTTTGTACTTGAGTTTTAAAGTATGTTTCTCTGTATTTACTT  1047

seq1  ACACAGACGTCTATGTCCTTAAGAGATGGAAGTGAGACTCACCTGCAGCC  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACGTCTATGTCCTTAAGAGATGGAAGTGAGACTCACCTGCAGCC  1097

seq1  AAGGGAGACATAGCCACAGGTTCTTGTAATTGAGGTATTTGTGGATGGGA  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGACATAGCCACAGGTTCTTGTAATTGAGGTATTTGTGGATGGGA  1147

seq1  GGGAGAGGTGCACATGAGAGCACCTAGGGATGATTTGTATGGAATTC  1161
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGTGCACATGAGAGCACCTAGGGATGATTTGTATGGAATTC  1194