BAC Information

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BAC

Clone NameB6Ng01-284N05
Chromosome5 (Build37)
Map Location 72,754,053 - 72,918,807
singlet/doubletdoublet
Overlap geneCorin, Nfxl1
Upstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
Downstream geneZar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284N05.bB6Ng01-284N05.g
ACCGA083433GA083434
length6091,068
definitionB6Ng01-284N05.b B6Ng01-284N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,754,053 - 72,754,661)(72,917,738 - 72,918,807)
sequence
gaattcaaaagaaattactctgactggattcaattctttcttcaatggtc
agttactctctatgaaaataatgcttagtgtctctaaaaatattgtgaat
gaacgaaatcattttattttttgagatcataatataatcacatcatctca
gcttctcttttcttcctctaaacattcccaattacccctcctttctctct
ttcaaattcaccgccactttattaattgttacatacatttaagtatatgt
gcttggaaggagttacagagacaaagtttggagctgagatgaaaggatgg
tccatgtagagactgccatatccagggatccaccccataatcagcatcca
aacgctgacaccattgcatacactagcaagattttatcgaaaggacccag
atgtagctgtctcttgtgagactatgccggggcctagcaaacacagaagt
ggatgctcacagtcagctaatggatggatcacagggctcccaatggagga
gctagagaaagtacccaaggagctaaagggatctgcaaccctataggcgg
aacaacataatgaactaaccagtatcccggagctcttgactctagctgca
tatgtatca
gaattctggatttctttatttctaaaagtcatttttcttctgcaacttcc
cttctactgtgttgtggtacagaatctcttttacgtggtgctggattcgg
tttcctagtatgttaattttttgaacaggttggagagatagctcagtggt
taagagcatttctcttcttacagaggatctaggtttgattctcagcaccc
acatggctgtgtataactataaccgtctctagctctactttcaggggatc
tgatgccctcttctggtctctgtgggcaccaggcacacccatggtataca
tgtatgtctgggtaaaacacccatatacataaaacttgaataaatatttt
aaaaatattttttaagtttatgtgtggtaagcatgcctgtaatcccagca
ttcaagaggctgaggcagaaagatgacaagtttaaggccagtctgggcta
cctagtgagtgaggtctagaatagtctgagggacaggtcctggtgttttg
tttttacaaaggagaaaagaaaacaaaaacaaaaacaaatttttccaata
attttgcaatattagtattaggttgtattcttgtggtgtcctttttctct
ttcttggtttataatcatggaaatagtaggttccctgaaaaaattgggaa
ctgcaggttagtgtgaattcttcagatgcttgttagaactgaagcttctc
acgctggcctctctgtggttggttttgtgtgtcccagactgtcgtacaac
tagccatgcagtgtgcagcctttccgtacttagctcttttcacttagctt
aggaagttaggttccactatattttttcatgggttgataactcagatttt
atttatcactgaaaaacattattgtactgcctggacatctcatagctgac
ttatttttaatgtactattttattttttgagaactttatggactgaattt
tggatgatagtcagcccttttcttcccttctccagcttttaccagattca
ttcctgcttcccacccactctcacttgtgcctctttttttccttactaac
tcactgcttcaattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72754053_72754661
seq2: B6Ng01-284N05.b_50_658

seq1  GAATTCAAAAGAAATTACTCTGACTGGATTCAATTCTTTCTTCAATGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAAATTACTCTGACTGGATTCAATTCTTTCTTCAATGGTC  50

seq1  AGTTACTCTCTATGAAAATAATGCTTAGTGTCTCTAAAAATATTGTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTCTATGAAAATAATGCTTAGTGTCTCTAAAAATATTGTGAAT  100

seq1  GAACGAAATCATTTTATTTTTTGAGATCATAATATAATCACATCATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAAATCATTTTATTTTTTGAGATCATAATATAATCACATCATCTCA  150

seq1  GCTTCTCTTTTCTTCCTCTAAACATTCCCAATTACCCCTCCTTTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTTTCTTCCTCTAAACATTCCCAATTACCCCTCCTTTCTCTCT  200

seq1  TTCAAATTCACCGCCACTTTATTAATTGTTACATACATTTAAGTATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCACCGCCACTTTATTAATTGTTACATACATTTAAGTATATGT  250

seq1  GCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGG  300

seq1  TCCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCA  350

seq1  AACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAG  400

seq1  ATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGT  450

seq1  GGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGA  500

seq1  GCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGG  550

seq1  AACAACATAATGAACTAACCAGTATCCCGGAGCTCTTGACTCTAGCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATAATGAACTAACCAGTATCCCGGAGCTCTTGACTCTAGCTGCA  600

seq1  TATGTATCA  609
      |||||||||
seq2  TATGTATCA  609

seq1: chr5_72917738_72918807
seq2: B6Ng01-284N05.g_67_1134 (reverse)

seq1  AAATAAATTGAAGCAGTGAGTTAGTAAAGGAAAAAAAGAGGCACAAAGTT  50
      |||| |||||||||||||||||||| ||||||||||||||||||||   |
seq2  AAAT-AATTGAAGCAGTGAGTTAGT-AAGGAAAAAAAGAGGCACAA--GT  46

seq1  GAGAGTGGGTGGGAAGGCAGGAATGGATCTGGTAAAAGCTGGAGAAGGGA  100
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GAGAGTGGGTGGGAA-GCAGGAATGAATCTGGTAAAAGCTGGAGAAGGGA  95

seq1  --GAAAGGGCTGACTATCATCC-AAATTCAGTCCATAAAGTTCTCAAAAA  147
         ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAAAGGGCTGACTATCATCCAAAATTCAGTCCATAAAGTTCTCAAAAA  145

seq1  ATAAAATAGTACATTAAAAATAAGTCAGCTATGAGATGTCCAGGCAGTAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGTACATTAAAAATAAGTCAGCTATGAGATGTCCAGGCAGTAC  195

seq1  AATAATGTTTTTCAGTGATAAATAAAATCTGAGTTATCAACCCATGAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTTTTCAGTGATAAATAAAATCTGAGTTATCAACCCATGAAAA  245

seq1  AATATAGTGGAACCTAACTTCCTAAGCTAAGTGAAAAGAGCTAAGTACGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTGGAACCTAACTTCCTAAGCTAAGTGAAAAGAGCTAAGTACGG  295

seq1  AAAGGCTGCACACTGCATGGCTAGTTGTACGACAGTCTGGGACACACAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGCACACTGCATGGCTAGTTGTACGACAGTCTGGGACACACAAA  345

seq1  ACCAACCACAGAGAGGCCAGCGTGAGAAGCTTCAGTTCTAACAAGCATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACAGAGAGGCCAGCGTGAGAAGCTTCAGTTCTAACAAGCATCT  395

seq1  GAAGAATTCACACTAACCTGCAGTTCCCAATTTTTTCAGGGAACCTACTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTCACACTAACCTGCAGTTCCCAATTTTTTCAGGGAACCTACTA  445

seq1  TTTCCATGATTATAAACCAAGAAAGAGAAAAAGGACACCACAAGAATACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGATTATAAACCAAGAAAGAGAAAAAGGACACCACAAGAATACA  495

seq1  ACCTAATACTAATATTGCAAAATTATTGGAAAAATTTGTTTTTGTTTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATACTAATATTGCAAAATTATTGGAAAAATTTGTTTTTGTTTTTG  545

seq1  TTTTCTTTTCTCCTTTGTAAAAACAAAACACCAGGACCTGTCCCTCAGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTCCTTTGTAAAAACAAAACACCAGGACCTGTCCCTCAGAC  595

seq1  TATTCTAGACCTCACTCACTAGGTAGCCCAGACTGGCCTTAAACTTGTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGACCTCACTCACTAGGTAGCCCAGACTGGCCTTAAACTTGTCA  645

seq1  TCTTTCTGCCTCAGCCTCTTGAATGCTGGGATTACAGGCATGCTTACCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGCCTCAGCCTCTTGAATGCTGGGATTACAGGCATGCTTACCAC  695

seq1  ACATAAACTTAAAAAATATTTTTAAAATATTTATTCAAGTTTTATGTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTTAAAAAATATTTTTAAAATATTTATTCAAGTTTTATGTATA  745

seq1  TGGGTGTTTTACCCAGACATACATGTATACCATGGGTGTGCCTGGTGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTACCCAGACATACATGTATACCATGGGTGTGCCTGGTGCCC  795

seq1  ACAGAGACCAGAAGAGGGCATCAGATCCCCTGAAAGTAGAGCTAGAGACG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCAGAAGAGGGCATCAGATCCCCTGAAAGTAGAGCTAGAGACG  845

seq1  GTTATAGTTATACACAGCCATGTGGGTGCTGAGAATCAAACCTAGATCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTTATACACAGCCATGTGGGTGCTGAGAATCAAACCTAGATCCT  895

seq1  CTGTAAGAAGAGAAATGCTCTTAACCACTGAGCTATCTCTCCAACCTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAAGAGAAATGCTCTTAACCACTGAGCTATCTCTCCAACCTGTT  945

seq1  CAAAAAATTAACATACTAGGAAACCGAATCCAGCACCACGTAAAAGAGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATTAACATACTAGGAAACCGAATCCAGCACCACGTAAAAGAGAT  995

seq1  TCTGTACCACAACACAGTAGAAGGGAAGTTGCAGAAGAAAAATGACTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCACAACACAGTAGAAGGGAAGTTGCAGAAGAAAAATGACTTTT  1045

seq1  AGAAATAAAGAAATCCAGAATTC  1070
      |||||||||||||||||||||||
seq2  AGAAATAAAGAAATCCAGAATTC  1068