BAC Information

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BAC

Clone NameB6Ng01-286A20
Chromosome5 (Build37)
Map Location 84,605,735 - 84,725,717
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286A20.bB6Ng01-286A20.g
ACCGA084346GA084347
length1,1971,142
definitionB6Ng01-286A20.b B6Ng01-286A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,605,735 - 84,606,936)(84,724,556 - 84,725,717)
sequence
gaattcactctgtagagcaggctgtccttgaatttagaaatgtggttgat
cccaagtgctgggatcaaaggcatgtgccaccactgcccggattctgtgt
tcttatttaatgtgacagaaattaaatttcaaaactgaaatcagtattta
taatttcatattatttaaaaatagaatcattctttctaataaactaatat
ttgcagacagcatactgtggactaagaactatttaaattttttttaaatg
gcagtaatataagaaccataagaattcaagcctgtagtcaaaatgttaat
tattccttcatgaaacatttcatacattgacctaatccccaaaatcacaa
caatacaacaaaatggtgcatatctctgattattgagggaatttcatatc
tgcttttttcaagcctctcttcctatggcgaagtccatgtatcaaataat
taatcagttaaatgagcctgtttagaatttgaaaaaaatatatgtatata
gaaatgtgaccattagaggaaatattttatttgcacataaacatacatat
tcacacatatgtgtgatttttatccaatttagattgtctacccaaattta
tcttcaaatatgtaaaatggaatttataaaactataaataagtaaataca
tggagttgaagagacctgtgaagctaatttagaaatgaaatggatttgtt
tatgataaaagtgcaaaatttccattagaagggaactttaatggaaatac
caacattaagaaatacctacaggaatacccacatgaagaaaagaatactt
ttttttttttccattttatactcagaaatggttgctgtatgaatgtgtgg
tgaattaagaaattagaaataagaattgtaaactggattaaatttccatc
acaaatttagaattaatatagtatggttcagtatcatcagtattgttact
cttctgtttgaggagcaaatataaatgttcccaaatgaaaaatatgttcc
ctcatgtaactgttattatcatgtaatttttcagattcttatgcagagta
atacatcaaaaatattggtagaggtgtgtatcttccagtgggtggtgcag
aataacactattgaaagtaataaatgtgtatgctaaaaattatgtttatt
tagaaataagccaaggtatcatggtgttctatagtggagacagatat
gaattctttatttgcatgaagagggatcccaggtgcttaaaactgtaatt
gggcccaggggctacatgacttcctcaatgacagaggtaggggtcgttga
gccacatacccctgggtatgctgtgtaagaatagggagggagcaaatctc
actcctactggtctcaagatgagattttcatggtttgactctgcctagat
gtgatgtgttgaccttggtcttattccaggccatcgctcttgttccaggc
cactaccctggacatacctgctccacagctaggcatgccctcatacctag
gagagaaccaatttttactttgtgtctaaatgcacgtggtactaaactca
ttccttaaaacaatgcatttgtctgttctcctctgtgaagcttctattta
caacaaatgataattaggacagagacccacattggcctcctacaagctca
gggatttttgtagaagaaagaaaagagactgtttaagaatgagagtcatg
gatgggtacaagtaaacactgtctaatgaacacagtgccgatgcacatat
gaagtcaaagaatttatgacagcatgcacaaaacctataccagcttagag
ttaaatttttctgagattctaggaagggttagtgtacagctttttcacaa
aaattcaagtaggtatgtcagacctccattttctaactgcaattagttat
ataatatctgatgataaatcccatataatgaaaaatagaaaattatacag
tactatgagattgatgatgccaggagagttggacataaaaatagggcata
aattaacattaggaattaaattattgccatatagaatgttgtctttataa
ataatggtaatatattagagaaagaattaataagcaatgtccttgaattg
tttccgtaaatacattgatggatcaattaaactatgaaatatatagtaaa
ccttgataattcttgctttacccattagtgcaaatatcatttttctttta
aagtcagcaaatctcaaaaatacaacacaactttttagagggcagctatc
tgctgagtgatttgtaaataacatgttatgtgtttcgaaagagtaaattt
ataatacaatttatgttaatgccagagacgatctgccaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84605735_84606936
seq2: B6Ng01-286A20.b_44_1240

seq1  GAATTCACTCTGTAGAGCAGGCTGTCCTTGAATTTAGAAATGTGGTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGAGCAGGCTGTCCTTGAATTTAGAAATGTGGTTGAT  50

seq1  CCCAAGTGCTGGGATCAAAGGCATGTGCCACCACTGCCCGGATTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGATCAAAGGCATGTGCCACCACTGCCCGGATTCTGTGT  100

seq1  TCTTATTTAATGTGACAGAAATTAAATTTCAAAACTGAAATCAGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTAATGTGACAGAAATTAAATTTCAAAACTGAAATCAGTATTTA  150

seq1  TAATTTCATATTATTTAAAAATAGAATCATTCTTTCTAATAAACTAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATATTATTTAAAAATAGAATCATTCTTTCTAATAAACTAATAT  200

seq1  TTGCAGACAGCATACTGTGGACTAAGAACTATTTAAATTTTTTTTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACAGCATACTGTGGACTAAGAACTATTTAAATTTTTTTTAAATG  250

seq1  GCAGTAATATAAGAACCATAAGAATTCAAGCCTGTAGTCAAAATGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATATAAGAACCATAAGAATTCAAGCCTGTAGTCAAAATGTTAAT  300

seq1  TATTCCTTCATGAAACATTTCATACATTGACCTAATCCCCAAAATCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTCATGAAACATTTCATACATTGACCTAATCCCCAAAATCACAA  350

seq1  CAATACAACAAAATGGTGCATATCTCTGATTATTGAGGGAATTTCATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAACAAAATGGTGCATATCTCTGATTATTGAGGGAATTTCATATC  400

seq1  TGCTTTTTTCAAGCCTCTCTTCCTATGGCGAAGTCCATGTATCAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTCAAGCCTCTCTTCCTATGGCGAAGTCCATGTATCAAATAAT  450

seq1  TAATCAGTTAAATGAGCCTGTTTAGAATTTGAAAAAAATATATGTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTTAAATGAGCCTGTTTAGAATTTGAAAAAAATATATGTATATA  500

seq1  GAAATGTGACCATTAGAGGAAATATTTTATTTGCACATAAACATACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGACCATTAGAGGAAATATTTTATTTGCACATAAACATACATAT  550

seq1  TCACACATATGTGTGATTTTTATCCAATTTAGATTGTCTACCCAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATATGTGTGATTTTTATCCAATTTAGATTGTCTACCCAAATTTA  600

seq1  TCTTCAAATATGTAAAATGGAATTTATAAAACTATAAATAAGTAAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATATGTAAAATGGAATTTATAAAACTATAAATAAGTAAATACA  650

seq1  TGGAGTTGAAGAGACCTGTGAAGCTAATTTAGAAATGAAATGGATTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTGAAGAGACCTGTGAAGCTAATTTAGAAATGAAATGGATTTGTT  700

seq1  TATGATAAAAGTGCAAAATTTCCATTAGAAGGGAACTTTAATGGAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAAAGTGCAAAATTTCCATTAGAAGGGAACTTTAATGGAAATAC  750

seq1  CAACATTAAGAAATACCTACAGGAATACCCACATGAAGAAAAGAATAC-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACATTAAGAAATACCTACAGGAATACCCACATGAAGAAAAGAATACTT  800

seq1  TTTTTTTTTTCCATTTTATACTCAGAAATGGTTGCTGTATGAATGTGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCATTTTATACTCAGAAATGGTTGCTGTATGAATGTGTGG  850

seq1  TGAATTAAGAAATTAGAAATAAGAATTGTAAACTGGATTAAATTTCCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAGAAATTAGAAATAAGAATTGTAAACTGGATTAAATTTCCATC  900

seq1  ACAAATTTAGAATTAATATAGTATGGTTCAGTATCATCAGTATTGTTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAGAATTAATATAGTATGGTTCAGTATCATCAGTATTGTTACT  950

seq1  CTTCTGTTTGAGGAGCAAATATAAATGTTCCCAAATGAAAAATATGTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTGAGGAGCAAATATAAATGTTCCCAAATGAAAAATATGTTCC  1000

seq1  CTCAATGTAACTGTTA-TATCATGTAATTTTTCAGATTCTTATGCCAGGA  1048
      ||| |||||||||||| ||||||||||||||||||||||||||||   ||
seq2  CTC-ATGTAACTGTTATTATCATGTAATTTTTCAGATTCTTATGC--AGA  1047

seq1  GTTATACATCAAAAATATTTGGTAGAGGTGTGTATCTTCCAGT-GGTGGT  1097
      || |||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  GTAATACATCAAAAATA-TTGGTAGAGGTGTGTATCTTCCAGTGGGTGGT  1096

seq1  GCAG-ATAACACTATTGGAAAAGGTAAT-AATGTGTAATGGTTAAAAATT  1145
      |||| ||||||||||||   || ||||| ||||||||   | ||||||||
seq2  GCAGAATAACACTATTG---AAAGTAATAAATGTGTA--TGCTAAAAATT  1141

seq1  ATGTT--ATTAGAAATAAAAGGCCAAGGTAATCA--GTGTGTCATAGTGG  1191
      |||||   ||||||||||   |||||||| ||||  ||||   |||||||
seq2  ATGTTTATTTAGAAATAA---GCCAAGGT-ATCATGGTGTTCTATAGTGG  1187

seq1  AGACAAGATAT  1202
      |||| ||||||
seq2  AGAC-AGATAT  1197

seq1: chr5_84724556_84725717
seq2: B6Ng01-286A20.g_65_1206 (reverse)

seq1  GCATTGGCAGATCGTTCTCTTGGGGGCCCATATTAACATTAATTGTATTA  50
      |||||||||||||| |||||    |||    |||||||| ||||||||||
seq2  GCATTGGCAGATCG-TCTCT----GGC----ATTAACATAAATTGTATTA  41

seq1  TAAATTTAAACTCTCTCCGGAAACACATAACATGTTATTTACAAACCACT  100
      |||||||  ||||| ||  |||||||||||||||||||||||||| ||||
seq2  TAAATTT--ACTCTTTC--GAAACACATAACATGTTATTTACAAATCACT  87

seq1  CAGCAGAATAGCTGGCCCTCTAAAAAGTTGTG-TGTA-TTTTGAGAATTT  148
      |||||| |||||| |||||||||||||||||| |||| ||||||| ||||
seq2  CAGCAG-ATAGCT-GCCCTCTAAAAAGTTGTGTTGTATTTTTGAG-ATTT  134

seq1  GCTGACTTTAAAAGAAAAATGAATATTTGCACTAATGGGGTAAAAGCAAA  198
      ||||||||||||||||||||| |||||||||||||||||   ||||| ||
seq2  GCTGACTTTAAAAGAAAAATG-ATATTTGCACTAATGGG--TAAAGC-AA  180

seq1  GAATTATCAAGGTTTACTAATATATTTTCATAGTTTAATTGATCCATCAA  248
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GAATTATCAAGGTTTACT-ATATA-TTTCATAGTTTAATTGATCCATCAA  228

seq1  TGTATTTACGGAAACAATTCAAGGACATTGCTTATTAATTCTTTCTCTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTACGGAAACAATTCAAGGACATTGCTTATTAATTCTTTCTCTAA  278

seq1  TATATTACCATTATTTATAAAGACAACATTCTATATGGCAATAATTTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACCATTATTTATAAAGACAACATTCTATATGGCAATAATTTAAT  328

seq1  TCCTAATGTTAATTTATGCCCTATTTTTATGTCCAACTCTCCTGGCATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGTTAATTTATGCCCTATTTTTATGTCCAACTCTCCTGGCATCA  378

seq1  TCAATCTCATAGTACTGTATAATTTTCTATTTTTCATTATATGGGATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCATAGTACTGTATAATTTTCTATTTTTCATTATATGGGATTTA  428

seq1  TCATCAGATATTATATAACTAATTGCAGTTAGAAAATGGAGGTCTGACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGATATTATATAACTAATTGCAGTTAGAAAATGGAGGTCTGACAT  478

seq1  ACCTACTTGAATTTTTGTGAAAAAGCTGTACACTAACCCTTCCTAGAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTGAATTTTTGTGAAAAAGCTGTACACTAACCCTTCCTAGAATC  528

seq1  TCAGAAAAATTTAACTCTAAGCTGGTATAGGTTTTGTGCATGCTGTCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATTTAACTCTAAGCTGGTATAGGTTTTGTGCATGCTGTCATA  578

seq1  AATTCTTTGACTTCATATGTGCATCGGCACTGTGTTCATTAGACAGTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGACTTCATATGTGCATCGGCACTGTGTTCATTAGACAGTGTT  628

seq1  TACTTGTACCCATCCATGACTCTCATTCTTAAACAGTCTCTTTTCTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTACCCATCCATGACTCTCATTCTTAAACAGTCTCTTTTCTTTCT  678

seq1  TCTACAAAAATCCCTGAGCTTGTAGGAGGCCAATGTGGGTCTCTGTCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAATCCCTGAGCTTGTAGGAGGCCAATGTGGGTCTCTGTCCTA  728

seq1  ATTATCATTTGTTGTAAATAGAAGCTTCACAGAGGAGAACAGACAAATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTTGTTGTAAATAGAAGCTTCACAGAGGAGAACAGACAAATGC  778

seq1  ATTGTTTTAAGGAATGAGTTTAGTACCACGTGCATTTAGACACAAAGTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAGGAATGAGTTTAGTACCACGTGCATTTAGACACAAAGTAA  828

seq1  AAATTGGTTCTCTCCTAGGTATGAGGGCATGCCTAGCTGTGGAGCAGGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTTCTCTCCTAGGTATGAGGGCATGCCTAGCTGTGGAGCAGGTA  878

seq1  TGTCCAGGGTAGTGGCCTGGAACAAGAGCGATGGCCTGGAATAAGACCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGTAGTGGCCTGGAACAAGAGCGATGGCCTGGAATAAGACCAA  928

seq1  GGTCAACACATCACATCTAGGCAGAGTCAAACCATGAAAATCTCATCTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACACATCACATCTAGGCAGAGTCAAACCATGAAAATCTCATCTTG  978

seq1  AGACCAGTAGGAGTGAGATTTGCTCCCTCCCTATTCTTACACAGCATACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTAGGAGTGAGATTTGCTCCCTCCCTATTCTTACACAGCATACC  1028

seq1  CAGGGGTATGTGGCTCAACGACCCCTACCTCTGTCATTGAGGAAGTCATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTATGTGGCTCAACGACCCCTACCTCTGTCATTGAGGAAGTCATG  1078

seq1  TAGCCCCTGGGCCCAATTACAGTTTTAAGCACCTGGGATCCCTCTTCATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTGGGCCCAATTACAGTTTTAAGCACCTGGGATCCCTCTTCATG  1128

seq1  CAAATAAAGAATTC  1162
      ||||||||||||||
seq2  CAAATAAAGAATTC  1142