BAC Information

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BAC

Clone NameB6Ng01-286B23
Chromosome5 (Build37)15 (Build37)
Map Location 104,955,251 - 104,956,38432,951,842 - 32,951,889
singlet/doubletsingletsinglet
Overlap geneLOC100041172
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165
Downstream geneD930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286B23.bB6Ng01-286B23.g
ACCGA084398GA084399
length1,143616
definitionB6Ng01-286B23.b B6Ng01-286B23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,955,251 - 104,956,384)(32,951,842 - 32,951,889)
sequence
gaattcagtaatgaatgaaacaccatgttatatatatttaccccatgtga
taaaatttatgttaaatattttaccaggaaaaagtgtctataactgacac
aagtgttctgacgatttcacctgttgccatttgtttccacttttgctctt
aaattagttgagtctgcacaagtgagatcatgtagagaatggaaaagaga
atgagtcactactggagaataattgcagtgggtcaagcgcttacctggat
ttctcaggaaccagggataatgaaacagctgcccatcttcctggctttgg
aaaaatcatgtggctggaccaagaaatccaatcaattttttgtaactttt
aattgtacagaaccaacatcaacctgttcttgtggacttcaggcttaggg
ccctttctatttccagctagttatctagacatgttttattgcgaatatgg
gttagggaaaaatgctcttcctgccactacatagataaagggtacttagg
atctggctgaaagcaacgtgagagttgaaccagcaaaactgataggattc
caaatatttggcaaaaggatttaggattctagaaaagtattatgattcag
agaggactttaaatcccagggctgagcaatactggagatgttgctcagtt
gatagaatgcttgcctagtatgcacacagcattgggcttgatcctagcac
cacttaaaggagcatagtggtctatgcttgcaatactatcatttggaaag
tgaaggtgggagaatcagaagctcaggaatcctcagccctcagctacaca
gcacattgaaggctagcccattctatatgagacactgtcacaatcaaaca
tacaaaacaaatataaaaaatcttaaatcaaggggagcttggagagacag
ttcagcctgtaatgtgcttcctgggtaagcatgatgacccaagtttagtc
ccagacccacataaacagcaggcatggtagcacatactagcatctcagca
ctggggaggcagaagaccagggagaacttggaggcttactggccagccac
ccttagctattttagccagctccaggtcctaactggagagagactctggt
cctcagaatgtaagattgaatagctctggaagaagtaaatacc
gaattcagatggaaatcagaacatcagaaagcctttgaaaatattaaaga
ggccctgctgactgcgacagccttggcattgccagttctaaggaaaccct
tcatcctctatgttgatgaaaggggagggtggccagagaagttcttcctc
aggctataggaccgtgaaagaggcccatagcatatttgtctaagaagctg
gacccagtggccagcggatggcccacatgtttaaaggtcgttgctgcagt
agccttactcgttaaggatgcccacaaattaactttgggacagcaaataa
ctgtggtagcccccactctcttgaaagcattatccaccagccattatata
ggaagaaggaagcttgtgacctaaggaggaaccagagtagatacttagaa
ctatagatagctgagttatacccatatacaagtatttacgccagacgtgg
tggtgcacacctttgatcccagcacttgggaggcagaggcaggcagattt
ctgagttggaggccctccgggcctaccaagtgagttccagcacggcggcc
agggtttatacagagaaaccctgtctccaaaaaccaaagaaaaaaaacaa
aaaacaaaaagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104955251_104956384
seq2: B6Ng01-286B23.b_46_1188

seq1  GAATTCAGTAATGAATGAAACACCATGTTATATATATTTACCCCATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATGAATGAAACACCATGTTATATATATTTACCCCATGTGA  50

seq1  TAAAATTTATGTTAAATATTTTACCAGGAAAAAGTGTCTATAACTGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTATGTTAAATATTTTACCAGGAAAAAGTGTCTATAACTGACAC  100

seq1  AAGTGTTCTGACGATTTCACCTGTTGCCATTTGTTTCCACTTTTGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTGACGATTTCACCTGTTGCCATTTGTTTCCACTTTTGCTCTT  150

seq1  AAATTAGTTGAGTCTGCACAAGTGAGATCATGTAGAGAATGGAAAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTGAGTCTGCACAAGTGAGATCATGTAGAGAATGGAAAAGAGA  200

seq1  ATGAGTCACTACTGGAGAATAATTGCAGTGGGTCAAGCGCTTACCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCACTACTGGAGAATAATTGCAGTGGGTCAAGCGCTTACCTGGAT  250

seq1  TTCTCAGGAACCAGGGATAATGAAACAGCTGCCCATCTTCCTGGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAACCAGGGATAATGAAACAGCTGCCCATCTTCCTGGCTTTGG  300

seq1  AAAAATCATGTGGCTGGACCAAGAAATCCAATCAATTTTTTGTAACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATGTGGCTGGACCAAGAAATCCAATCAATTTTTTGTAACTTTT  350

seq1  AATTGTACAGAACCAACATCAACCTGTTCTTGTGGACTTCAGGCTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACAGAACCAACATCAACCTGTTCTTGTGGACTTCAGGCTTAGGG  400

seq1  CCCTTTCTATTTCCAGCTAGTTATCTAGACATGTTTTATTGCGAATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTATTTCCAGCTAGTTATCTAGACATGTTTTATTGCGAATATGG  450

seq1  GTTAGGGAAAAATGCTCTTCCTGCCACTACATAGATAAAGGGTACTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGAAAAATGCTCTTCCTGCCACTACATAGATAAAGGGTACTTAGG  500

seq1  ATCTGGCTGAAAGCAACGTGAGAGTTGAACCAGCAAAACTGATAGGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTGAAAGCAACGTGAGAGTTGAACCAGCAAAACTGATAGGATTC  550

seq1  CAAATATTTGGCAAAAGGATTTAGGATTCTAGAAAAGTATTATGATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTGGCAAAAGGATTTAGGATTCTAGAAAAGTATTATGATTCAG  600

seq1  AGAGGACTTTAAATCCCAGGGCTGAGCAATACTGGAGATGTTGCTCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTTTAAATCCCAGGGCTGAGCAATACTGGAGATGTTGCTCAGTT  650

seq1  GATAGAATGCTTGCCTAGTATGCACACAGCATTGGGCTTGATCCTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATGCTTGCCTAGTATGCACACAGCATTGGGCTTGATCCTAGCAC  700

seq1  CACTTAAAGGAGCATAGTGGTCTATGCTTGCAATACTATCATTTGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGGAGCATAGTGGTCTATGCTTGCAATACTATCATTTGGAAAG  750

seq1  TGAAGGTGGGAGAATCAGAAGCTCAGGAATCCTCAGCCCTCAGCTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGGGAGAATCAGAAGCTCAGGAATCCTCAGCCCTCAGCTACACA  800

seq1  GCACATTGAAGGCTAGCCCATTCTATATGAGACACTGTCACAATCAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGAAGGCTAGCCCATTCTATATGAGACACTGTCACAATCAAACA  850

seq1  TACAAAACAAAATATAAAAAATCTTAAATCAAGGGGAGCTTGGAGAGACA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAC-AAATATAAAAAATCTTAAATCAAGGGGAGCTTGGAGAGACA  899

seq1  GTTCAGCCTGTAATGTGCTTCCTGGGTAAGCATGATGACCCAAGTTTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTCAGCCTGTAATGTGCTTCCTGGGTAAGCATGATGACCCAAGTTT-AG  948

seq1  TCCCAGAACCCACATAAACAGCAGGCATGGTAGCACATACTAGCAATCTC  1000
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCCAG-ACCCACATAAACAGCAGGCATGGTAGCACATACTAGC-ATCTC  996

seq1  AGCACTGGGGAAGCAG-AGA-CAGGAAGAACCTTGAGGCTTACTGGCCAG  1048
      ||||||||||| |||| ||| |||| ||||| | ||||||||||||||||
seq2  AGCACTGGGGAGGCAGAAGACCAGGGAGAACTTGGAGGCTTACTGGCCAG  1046

seq1  CCACCC-TAGCCTATTTAGCCAGCTCCAGGTCCT-ACT---GAGAGACTC  1093
      |||||| ||||   |||||||||||||||||||| |||   |||||||||
seq2  CCACCCTTAGCTATTTTAGCCAGCTCCAGGTCCTAACTGGAGAGAGACTC  1096

seq1  TG--TCTCAGATAGTAAGA-TGGATAGCTCT-GAAG-AGT-AATACC  1134
      ||   ||||||  |||||| || |||||||| |||| ||| ||||||
seq2  TGGTCCTCAGAATGTAAGATTGAATAGCTCTGGAAGAAGTAAATACC  1143

seq1: chr15_32951842_32951889
seq2: B6Ng01-286B23.g_528_575 (reverse)

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAGGTGCTGGGATTAAAGG  48
      ||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGG  48