BAC Information

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BAC

Clone NameB6Ng01-286F22
Chromosome5 (Build37)
Map Location 70,099,623 - 70,218,879
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286F22.bB6Ng01-286F22.g
ACCGA084586GA084587
length1,1341,114
definitionB6Ng01-286F22.b B6Ng01-286F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,217,731 - 70,218,879)(70,099,623 - 70,100,753)
sequence
gaattctataagaagtttagaggagtattattatcagtatcctaaatttt
ttcaataagatagaacaaaaaggggaactattaactgcataactactgag
gcccaaacaactataagaaagcaatatactaatttccttcataaaaacac
agaaaataaactaatcagaaaccagatttaacagcacattcaaaagatca
aacttgtttttaatctttcctatggcttctttgtttgaacaaataagagt
cttgttaaaaattcctacttacacataaacatgctgctaataatgttggg
tgtgtcttctagttcatacttgactgaaaacaatctaacactatatattc
aaatatatagatatgactctgttgaaaattttccctgtcaacattatgtt
cctaccagttataacagtctttacagggtgggatatcagaaaaaaattca
gcttaccaaatagaatcttgcatcataaaagattgtcctggctattacag
gattaggataataacaaaatgaggaaatctaacttactatgtgtagatga
gtcttgaaacattatgcaaatgtggaatgttctaaatcttgttatgtaag
aatgaatttttgctaagcttgacggacaaattgggattttaagttccagc
tgtagcacttagagctaatagagttgccatacgtttcttatatttcagtt
cttttctatgtaagactgaataggtaatgtggaacatgcattcatgggct
tgtaagactgaattgagttaacagaaaaagatcttaactcagggtctgcc
acactgaaaggatttatgactgtcagtttggttatatttgtaacatttag
attattgcatatagtagaaccttactgaaattcaatcaaagcgagacact
atgatctaaacagtttcaagaaaattagcagacaacccggcacctttcct
ggtgagagcacaggggtccgcccgggcccgagaggtttctgctcagcccg
gtggcaggagcttcttggctcaggactcgagagcagctgcacgggtgggg
tgtggatacagagcagccatttcaggacaggcgaggcagagagcttctga
ggcggggcaatcttcggatcagacaaccggccac

gaattcttgtggtgtcattgacccctccagcttgctcaattctatttttg
gctttttcttgtgttacctcagatattaagaactaactagatacatttct
ttgagctgaagtctttagcatgtaatttatagattatgtagccatttctg
gatgattctttttatttgcttaatcactgacatcaatgctgggaaacaca
cacacacacacacacacacacacacacacacacacacacacacattagtt
aacaagcatgactatccactgttttcccccaagcttcaggtagcccgtag
atatttactctgtccttagtgagttgatatattgaaataaaccaatattt
caaactcgcatttacataaacattggattccaaaattctctggagatcag
atcgataagccctcatgtcaaacactttttacagctaaataatagttgtc
cctcttagtccaggcatgttttcatggtctgttacatcccatgttcattc
cagtttccttcccaacactgaaacaatgtgtcagcttccatatttcttta
ccagtgcacctcctccctctgccttctaagtgcatgttggctattcatga
tgtattctattggtaagtaaataaatgtgctccatttcttctgttttata
gaaagggcctttatagaagtggctgatatattgatagcagggactaatgc
ttcattttgaagctgtcatatatctgaaaaaataattttaaggaagagaa
agaaagagtggaaaataaagagaaataattcttaaagatctcatatttgg
tatgaaatgtgtagtgttgaaccaatccctgatgttagaaatactgtaag
ccgtttcataaagggggttactgcatttctgtcacccagtttaactatgc
ctatatgtgactgaaggatagaaacttccacaaaaatattctagaaataa
gtggctagagaaagtccccagagctgaggggttttctgtcctatagtcta
taggaggaccacatatatacctcagagctcctgaactaactacaatcaaa
gaagcacattggtggaactcatgtctctactgcgatgtagccagaatggc
ctagtcagtcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70217731_70218879
seq2: B6Ng01-286F22.b_46_1179 (reverse)

seq1  GTGGCCGGTTGTCTGGAGCCGAAGATGGCGCCGCCTCAGAAGCTCTCTGG  50
      |||||||||||||| || |||||||| || ||||||||||||||||||| 
seq2  GTGGCCGGTTGTCT-GATCCGAAGATTGCCCCGCCTCAGAAGCTCTCTG-  48

seq1  CCCTCGCCTGTCCCTGAAATGGCTGGCCTCTGTATTCCACACCCCACCCG  100
       |||||||||| |||||||||||||  ||||||| |||||||||||||||
seq2  -CCTCGCCTGT-CCTGAAATGGCTG--CTCTGTA-TCCACACCCCACCCG  93

seq1  TGCAGCCTGCCTTCCTCGGAGTCCCGGAGCCAAGGAGGCTCCTGCCACCG  150
      ||||| ||||  ||    |||| || ||||||| || |||||||||||||
seq2  TGCAG-CTGCTCTC----GAGT-CCTGAGCCAA-GAAGCTCCTGCCACCG  136

seq1  GGGCCTGAGGCAGAAACCTCTCGGG-CCGGGCGGACCCCTGTGCTCTCAC  199
      ||  |||| |||||||||||||||| ||||||||||||||||||||||||
seq2  GG--CTGA-GCAGAAACCTCTCGGGCCCGGGCGGACCCCTGTGCTCTCAC  183

seq1  CAGG-AAGGTGGCCGGTTGTCTGCTAATTTTCTTGAAACTGTTTAGATCA  248
      |||| |||||| | ||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGTGCCGGGTTGTCTGCTAATTTTCTTGAAACTGTTTAGATCA  233

seq1  TAGTGTCTCGCTTTGATTGAATTTCAGTAAGGTTCTACTATATGCAATAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTCGCTTTGATTGAATTTCAGTAAGGTTCTACTATATGCAATAA  283

seq1  TCTAAATGTTACAAATATAACCAAACTGACAGTCATAAATCCTTTCAGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGTTACAAATATAACCAAACTGACAGTCATAAATCCTTTCAGTG  333

seq1  TGGCAGACCCTGAGTTAAGATCTTTTTCTGTTAACTCAATTCAGTCTTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACCCTGAGTTAAGATCTTTTTCTGTTAACTCAATTCAGTCTTAC  383

seq1  AAGCCCATGAATGCATGTTCCACATTACCTATTCAGTCTTACATAGAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATGAATGCATGTTCCACATTACCTATTCAGTCTTACATAGAAAA  433

seq1  GAACTGAAATATAAGAAACGTATGGCAACTCTATTAGCTCTAAGTGCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAATATAAGAAACGTATGGCAACTCTATTAGCTCTAAGTGCTAC  483

seq1  AGCTGGAACTTAAAATCCCAATTTGTCCGTCAAGCTTAGCAAAAATTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAACTTAAAATCCCAATTTGTCCGTCAAGCTTAGCAAAAATTCAT  533

seq1  TCTTACATAACAAGATTTAGAACATTCCACATTTGCATAATGTTTCAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATAACAAGATTTAGAACATTCCACATTTGCATAATGTTTCAAGA  583

seq1  CTCATCTACACATAGTAAGTTAGATTTCCTCATTTTGTTATTATCCTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTACACATAGTAAGTTAGATTTCCTCATTTTGTTATTATCCTAAT  633

seq1  CCTGTAATAGCCAGGACAATCTTTTATGATGCAAGATTCTATTTGGTAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATAGCCAGGACAATCTTTTATGATGCAAGATTCTATTTGGTAAG  683

seq1  CTGAATTTTTTTCTGATATCCCACCCTGTAAAGACTGTTATAACTGGTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTTTTCTGATATCCCACCCTGTAAAGACTGTTATAACTGGTAG  733

seq1  GAACATAATGTTGACAGGGAAAATTTTCAACAGAGTCATATCTATATATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAATGTTGACAGGGAAAATTTTCAACAGAGTCATATCTATATATT  783

seq1  TGAATATATAGTGTTAGATTGTTTTCAGTCAAGTATGAACTAGAAGACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATAGTGTTAGATTGTTTTCAGTCAAGTATGAACTAGAAGACAC  833

seq1  ACCCAACATTATTAGCAGCATGTTTATGTGTAAGTAGGAATTTTTAACAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACATTATTAGCAGCATGTTTATGTGTAAGTAGGAATTTTTAACAA  883

seq1  GACTCTTATTTGTTCAAACAAAGAAGCCATAGGAAAGATTAAAAACAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTATTTGTTCAAACAAAGAAGCCATAGGAAAGATTAAAAACAAGT  933

seq1  TTGATCTTTTGAATGTGCTGTTAAATCTGGTTTCTGATTAGTTTATTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTTTGAATGTGCTGTTAAATCTGGTTTCTGATTAGTTTATTTTC  983

seq1  TGTGTTTTTATGAAGGAAATTAGTATATTGCTTTCTTATAGTTGTTTGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTATGAAGGAAATTAGTATATTGCTTTCTTATAGTTGTTTGGG  1033

seq1  CCTCAGTAGTTATGCAGTTAATAGTTCCCCTTTTTGTTCTATCTTATTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTAGTTATGCAGTTAATAGTTCCCCTTTTTGTTCTATCTTATTGA  1083

seq1  AAAAATTTAGGATACTGATAATAATACTCCTCTAAACTTCTTATAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAGGATACTGATAATAATACTCCTCTAAACTTCTTATAGAATT  1133

seq1  C  1149
      |
seq2  C  1134


seq1: chr5_70099623_70100753
seq2: B6Ng01-286F22.g_66_1179

seq1  GAATTCTTGTGGTGTCATTGACCCCTCCAGCTTGCTCAATTCTATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGGTGTCATTGACCCCTCCAGCTTGCTCAATTCTATTTTTG  50

seq1  GCTTTTTCTTGTGTTACCTCAGATATTAAGAACTAACTAGATACATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTTGTGTTACCTCAGATATTAAGAACTAACTAGATACATTTCT  100

seq1  TTGAGCTGAAGTCTTTAGCATGTAATTTATAGATTATGTAGCCATTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGAAGTCTTTAGCATGTAATTTATAGATTATGTAGCCATTTCTG  150

seq1  GATGATTCTTTTTATTTGCTTAATCACTGACATCAATGCTGGGAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCTTTTTATTTGCTTAATCACTGACATCAATGCTGGGAAACACA  200

seq1  CACACACACACACACACACACACACACACACACACACACACACATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACATTAGTT  250

seq1  AACAAGCATGACTATCCACTGTTTTCCCCCAAGCTTCAGGTAGCCCGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCATGACTATCCACTGTTTTCCCCCAAGCTTCAGGTAGCCCGTAG  300

seq1  ATATTTACTCTGTCCTTAGTGAGTTGATATATTGAAATAAACCAATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTCTGTCCTTAGTGAGTTGATATATTGAAATAAACCAATATTT  350

seq1  CAAACTCGCATTTACATAAACATTGGATTCCAAAATTCTCTGGAGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCGCATTTACATAAACATTGGATTCCAAAATTCTCTGGAGATCAG  400

seq1  ATCGATAAGCCCTCATGTCAAACACTTTTTACAGCTAAATAATAGTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATAAGCCCTCATGTCAAACACTTTTTACAGCTAAATAATAGTTGTC  450

seq1  CCTCTTAGTCCAGGCATGTTTTCATGGTCTGTTACATCCCATGTTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGTCCAGGCATGTTTTCATGGTCTGTTACATCCCATGTTCATTC  500

seq1  CAGTTTCCTTCCCAACACTGAAACAATGTGTCAGCTTCCATATTTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTCCCAACACTGAAACAATGTGTCAGCTTCCATATTTCTTTA  550

seq1  CCAGTGCACCTCCTCCCTCTGCCTTCTAAGTGCATGTTGGCTATTCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCACCTCCTCCCTCTGCCTTCTAAGTGCATGTTGGCTATTCATGA  600

seq1  TGTATTCTATTGGTAAGTAAATAAATGTGCTCCATTTCTTCTGTTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTATTGGTAAGTAAATAAATGTGCTCCATTTCTTCTGTTTTATA  650

seq1  GAAAGGGCCTTTATAGAAGTGGCTGATATATTGATAGCAGGGACTAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCCTTTATAGAAGTGGCTGATATATTGATAGCAGGGACTAATGC  700

seq1  TTCATTTTGAAGCTGTCATATATCTGAAAAAATAATTTTAAGGAAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGAAGCTGTCATATATCTGAAAAAATAATTTTAAGGAAGAGAA  750

seq1  AGAAAGAGTGGAAAATAAAGAGAAATAATTCTTAAAGATCTCATATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTGGAAAATAAAGAGAAATAATTCTTAAAGATCTCATATTTGG  800

seq1  TATGAAATGTGTAGTGTTGAACCAATCCCTGATGTTAGAAATACTGTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATGTGTAGTGTTGAACCAATCCCTGATGTTAGAAATACTGTAAG  850

seq1  CCGTTTCATAAAGGGGGTTACTGCATTTCTGTCACCCAGTTTAACTATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTCATAAAGGGGGTTACTGCATTTCTGTCACCCAGTTTAACTATGC  900

seq1  CTATATGTGACTGAAGGATAGAAACTTCCACAAAAAATATTCTAGAAATA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTATATGTGACTGAAGGATAGAAACTTCCAC-AAAAATATTCTAGAAATA  949

seq1  AGTGGCTAGAGAAAGTCCCCAAGGAGCTGAAGGGGTTTTCTGTCCTATAG  1000
      |||||||||||||||||||||  |||||| ||||||||||||||||||||
seq2  AGTGGCTAGAGAAAGTCCCCA--GAGCTG-AGGGGTTTTCTGTCCTATAG  996

seq1  GTCCTATAGGAGGACCAACAATATAATACCTCCAGAGCTCCCTGGAACTA  1050
         ||||||||||||||   |||| |||||| |||||||||   ||||| 
seq2  --TCTATAGGAGGACCA--CATAT-ATACCT-CAGAGCTCC--TGAACT-  1037

seq1  AACTACCAATCAAAGAAAGCACA-TGGTGGGACTCATGTCTCTAACTGCA  1099
      ||||| ||||||||| ||||||| |||||| |||||||||||| ||||| 
seq2  AACTA-CAATCAAAG-AAGCACATTGGTGGAACTCATGTCTCT-ACTGC-  1083

seq1  TATGTAGCAGAGAATGGCCTAGTCAGCCATCA  1131
       |||||||  |||||||||||||||| |||||
seq2  GATGTAGC-CAGAATGGCCTAGTCAGTCATCA  1114


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