BAC Information

Click to search

BAC

Clone NameB6Ng01-286I06
Chromosome5 (Build37)
Map Location 26,345,290 - 26,346,424
singlet/doubletsinglet
Overlap geneEG545739
Upstream geneActr3b, LOC100038949, EG272714
Downstream geneSpeer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik, Dpp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286I06.bB6Ng01-286I06.g
ACCGA084693GA084694
length1,1181,183
definitionB6Ng01-286I06.b B6Ng01-286I06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaaacagtcacaaaacatggactgaaaaagatcaactcaggct
tctatcagctccaaaaaagaacatggtaaaggaagagacctcagtggatt
acaggaagaaaggagaaggccacatgccacccagatcaatgataatgaga
agcactcatttgacatttgtacttggctctaatccctccaaggtgaattg
acctagaatgtcatatgacctctgcctgtctcctgtctaaggacccagaa
ctcactcaaacctccatatagcattccacctatcatgaagacatgcatgc
aagaatgtgacatgttgttcacctgtcaccctgagtggactgcagcctaa
agcaaagttgaaaggtacacttgccagtggtaacagtgtctcaaaagagg
ctaattcagagtctcacaagaggttgacttcccagaatacttgtgtgaag
acagagcaaagaacagctacattccatgaggagggtggctgcttggaagc
atggactagaaagttggcggggggaagcaaagatagatctaatgtgtcaa
tggtatcagatagtcatagcctgactgaattgtttgtccctacctgatgt
tcttgagtctccaggttgctggtcttctcctgttcgtctttaccactcag
gttcaactccaccaaactttgatgaatggtggcccaatcagcatgtactt
ccttgctctcctgctgcaatatcaccaacttcttctttataagattctcc
tccagcaggatccgggtgtgcaggttactggaaacacactctgcatggta
agatcctgcagcctcctcctcccgtttctacttacttccctttaacctga
cctgtaccctggatcccatgaagacttaatacaatccacctcaatacatc
catgacagctgtacaaacagcaaagaacaatttcaggaagaagaaatttt
ggctgtagtccaaacaccaaaaagggtccatgttttctccaagaaaaagg
atctcatctacccatgacagccatgcattgggcaatacattagtaggtgc
cactaccatcagtactcagagacacagaagcactcttattgttggtttac
tcctacttagctctgtaa

gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaatatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaatatgtggagaaagaggaacactcccccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgcttcactat
gttcatagcagcctatttttaatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggtaag
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaacgatatgttctcactgataagtggatattagcccagaaact
tagtatagcgagatataaggtacaatatgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtggacactttgctccttcttagaattggaaac
aatcactcatggaaggagttacagagacaaagtttctagctgagacaaaa
ggatggaccatctagagactgccatatccagggatccatcccataatttg
cccccaaacgatgacaccattgcatacactagcaagcctttgttgcaagg
accgtgatatagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctaatggatggatcacagggcccccaat
ggagagctagaagaaagtatccaagagctaaagagatctgcaaccctatc
ggcggaacacatatgaactaaccagtaccccagagctctgactctagctg
catatgtatcaaaagatgcctagtcttgcatcacctgaaagaagaggccc
aatgctagccactttatatgcccagtacatgcatgcaaggacaaaatgat
gggtgtggttaagggagacaccgtcgggattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26345290_26346424
seq2: B6Ng01-286I06.b_49_1166

seq1  GAATTCAAAAACAGTCACAAAACATGGACTGAAAAAGATCAACTCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACAGTCACAAAACATGGACTGAAAAAGATCAACTCAGGCT  50

seq1  TCTATCAGCTCCAAAAAAGAACATGGTAAAGGAAGAGACCTCAGTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGCTCCAAAAAAGAACATGGTAAAGGAAGAGACCTCAGTGGATT  100

seq1  ACAGGAAGAAAGGAGAAGGCCACATGCCACCCAGATCAATGATAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAAAGGAGAAGGCCACATGCCACCCAGATCAATGATAATGAGA  150

seq1  AGCACTCATTTGACATTTGTACTTGGCTCTAATCCCTCCAAGGTGAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCATTTGACATTTGTACTTGGCTCTAATCCCTCCAAGGTGAATTG  200

seq1  ACCTAGAATGTCATATGACCTCTGCCTGTCTCCTGTCTAAGGACCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAATGTCATATGACCTCTGCCTGTCTCCTGTCTAAGGACCCAGAA  250

seq1  CTCACTCAAACCTCCATATAGCATTCCACCTATCATGAAGACATGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAAACCTCCATATAGCATTCCACCTATCATGAAGACATGCATGC  300

seq1  AAGAATGTGACATGTTGTTCACCTGTCACCCTGAGTGGACTGCAGCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGACATGTTGTTCACCTGTCACCCTGAGTGGACTGCAGCCTAA  350

seq1  AGCAAAGTTGAAAGGTACACTTGCCAGTGGTAACAGTGTCTCAAAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTGAAAGGTACACTTGCCAGTGGTAACAGTGTCTCAAAAGAGG  400

seq1  CTAATTCAGAGTCTCACAAGAGGTTGACTTCCCAGAATACTTGTGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCAGAGTCTCACAAGAGGTTGACTTCCCAGAATACTTGTGTGAAG  450

seq1  ACAGAGCAAAGAACAGCTACATTCCATGAGGAGGGTGGCTGCTTGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAAGAACAGCTACATTCCATGAGGAGGGTGGCTGCTTGGAAGC  500

seq1  ATGGACTAGAAAGTTGGCGGGGGGAAGCAAAGATAGATCTAATGTGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTAGAAAGTTGGCGGGGGGAAGCAAAGATAGATCTAATGTGTCAA  550

seq1  TGGTATCAGATAGTCATAGCCTGACTGAATTGTTTGTCCCTACCTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAGATAGTCATAGCCTGACTGAATTGTTTGTCCCTACCTGATGT  600

seq1  TCTTGAGTCTCCAGGTTGCTGGTCTTCTCCTGTTCGTCTTTACCACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTCTCCAGGTTGCTGGTCTTCTCCTGTTCGTCTTTACCACTCAG  650

seq1  GTTCAACTCCACCAAACTTTGATGAATGGTGGCCCAATCAGCATGTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTCCACCAAACTTTGATGAATGGTGGCCCAATCAGCATGTACTT  700

seq1  CCTTGCTCTCCTGCTGCAATATCACCAACTTCTTCTTTATAAGATTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCTCCTGCTGCAATATCACCAACTTCTTCTTTATAAGATTCTCC  750

seq1  TCCAGCAGGATCCGGGTGTGCAGGTTACTGGAAACACACTCTGCATGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGGATCCGGGTGTGCAGGTTACTGGAAACACACTCTGCATGGTA  800

seq1  AGATCCTGCAGCCTCCTCCTCCCGTTTCTACTTACTTCCCTTTAACCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGCAGCCTCCTCCTCCCGTTTCTACTTACTTCCCTTTAACCTGA  850

seq1  CCTGTACCCTGGATCCCATGAAGACTTAATACAATCCACCTCAATACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCCTGGATCCCATGAAGACTTAATACAATCCACCTCAATACATC  900

seq1  CATGACAGCTGTACAAACAGCAAAGAACAATTTCAGGGAAGAAGAAATTT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGACAGCTGTACAAACAGCAAAGAACAATTTCA-GGAAGAAGAAATTT  949

seq1  TGGCTGTAGTCCAAACACCAAAAAGGGTCCATG-TTTCTCCAAAAGAAAA  999
      ||||||||||||||||||||||||||||||||| |||||||  |||||||
seq2  TGGCTGTAGTCCAAACACCAAAAAGGGTCCATGTTTTCTCC--AAGAAAA  997

seq1  AGGGATCTCCATCTACCCATGACAGCCCATGCATTGGGGCAATACCAATT  1049
      | |||||| |||||||||||||||| ||||||||| |||||||||  |||
seq2  A-GGATCT-CATCTACCCATGACAG-CCATGCATT-GGGCAATAC--ATT  1041

seq1  AGTAGGGTGCAACTACAATCAGGGTACTCAAGAGAACAACAGGGAGGGCA  1099
      |||| ||||| ||||| ||||  |||||| |||||   ||||     |||
seq2  AGTA-GGTGCCACTACCATCA--GTACTC-AGAGA--CACAG---AAGCA  1082

seq1  CTC-TATTGTTGTGTTACTCCTCACTTAGCTCTGTAA  1135
      ||| ||||||||  |||||||| ||||||||||||||
seq2  CTCTTATTGTTGGTTTACTCCT-ACTTAGCTCTGTAA  1118


| Home | SequenceCutter | Blast | Download |