BAC Information

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BAC

Clone NameB6Ng01-286K17
Chromosome5 (Build37)
Map Location 95,665,746 - 95,666,930
singlet/doubletsinglet
Overlap geneLOC100041296
Upstream geneLOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041253
Downstream geneLOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286K17.bB6Ng01-286K17.g
ACCGA084803GA084804
length1,1811,122
definitionB6Ng01-286K17.b B6Ng01-286K17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctctccagcaccgcatgcagcaaacaatatggccatgcctag
aacatcacaattcaaaagttggaagcaagaggatcaattcaagcccatcc
tcagccatattgttaagagaaggatagcctgagcattataattgggtcca
cttcttaacagagccaaacacagtcagaaaacggtaggtctgagagagat
gctactcttagcagaaagaaaacagataatgtgccaggaaggatcaggcc
agcacgcttgctcaagatgaaatcaggtgtgggatcggtgctgtggagtt
agctgcccaataatgagcacctgttaatcttctattcccagcacctactt
gatgatgtgactccaggtttttgaaatctgaagcctacttctgaccttct
tgggcactttcttggcatacatgtggtgcacattcatatattcagggaaa
acaccaaaacaaagagaacaagtcattaataaaataaatctgtaagtaga
acagtggcaaacccctttaatctctcaaatctggaggcaaaggtagcctg
ggttcgatgagtttgagactagccttatgtaagtagatatttattaacta
gtgaaacctatggagtaagcatctgttttagaatttaactagagctggct
gggctggcacataattctaatcccagctccctacagacagaaggaggtgg
acctttagagcccagaccgatctacagaaggaaatgtgagacgggggaac
tctaaaatagagaaatacactctcaaaaaccaaaccaaaccaaacaacac
aaaaatctaatttagctgggaggtgctactacaggcctttaattccagca
tttgcgaggcagaggtaggtggacctctgagtttgagctagcctggtcta
ccaagtgagatctgggacagccagtcctgtaaacagaatgcctgtctcaa
aagtgtaaaaacaaaaatgaaattaaacgttttctaaaaaaaaaaaaaca
aaaactttaagagatctagtagctgtgagatggctcatgatcaatggtta
cttcctaccagcctgaatgcccacaatgggaccacaggtgtaaggaagag
aaagcactatagggttctatggctccaaagtctacatgtaaggtcctctg
cccaacaaccacccattcctcacacccaggt
gaattctcatctgaggaataccaaatggcagagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatgattaagatcaaaaactcaggtgacagc
agaagctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagtttgtacaaccactctggaaatcagtctggctgttcctca
gaaaattggacatagtactaccggaggatccctcaatacctctcctgggc
atatatccagaaaatatgccaaccagtaaaaagaacacatgctccactat
gttcatagcagccttgtttataatagtcagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatacgactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggacggtatcatcctgagtgaggtaacccaatcacaaag
gaactcgcacagtatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaaagaataccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccagggaaggagttacagagacaaaatctggagctgtgacga
aaggatggatcatctagtgattgccatatgcaggtatccatcccataatc
agcttccaaatgctgacaccatttgcatacagcagcaagattttgcctga
aaggacccagatatagctctctcttgttgagacttatgccggggcctagg
aaaaacacagaaagtggatgatcaccagtcagctggttggaatggttcac
aaggtcccccaatgggaaggagctagaagaatttacccaaggagctaaag
ggaacttgcaaccgtataggttgtaacaatgaatatgaaataacccagct
accctggagcctctttgccctctagttgcatatggtaataaaagaagggt
ctaggttgggcccattcctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95665746_95666930
seq2: B6Ng01-286K17.b_51_1231 (reverse)

seq1  ACCTGGGTGTGAGGAATGTGTTGGTGTGTTGGCAGAGGACTTTACATGTA  50
      |||||||||||||||||| || | ||| | |||||||||| |||||||||
seq2  ACCTGGGTGTGAGGAATGGGTGGTTGT-TGGGCAGAGGACCTTACATGTA  49

seq1  GACTTGGGAGCACTAGAA-CCTGTAGTGCTTTCTC-TCCTTACACCTGTG  98
      ||||| |||||  ||||| ||| |||||||||||| ||||||||||||||
seq2  GACTTTGGAGCCATAGAACCCTATAGTGCTTTCTCTTCCTTACACCTGTG  99

seq1  GTCCCATTGT-TGCATTCAGGCTTGGTAGGAAGT-ACCATTGATCACTGA  146
      ||||||||||  |||||||||| ||||||||||| ||||||||||| |||
seq2  GTCCCATTGTGGGCATTCAGGC-TGGTAGGAAGTAACCATTGATCA-TGA  147

seq1  GCCATCTCACAGCCTACTAAGATCTCTTAAAGTTTTTGTTTTTTTTTTTT  196
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GCCATCTCACAG-CTACT-AGATCTCTTAAAGTTTTTGTTTTTTTTTTTT  195

seq1  TAGAAAACGTTTAATTTTCATTTTTTGTTTTTACACTTTTGAGACAGGCA  246
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TAGAAAACGTTTAA-TTTCA-TTTTTGTTTTTACACTTTTGAGACAGGCA  243

seq1  TTCTGTTTAACAGGACTGGCTGTCCCAGATCTCACTTGGTAGACCAGGCT  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTT-ACAGGACTGGCTGTCCCAGATCTCACTTGGTAGACCAGGCT  292

seq1  AGCTCAAACTCAGAGGTCCACCTACCTCTGCCTCGCAAATGCTGGAATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAACTCAGAGGTCCACCTACCTCTGCCTCGCAAATGCTGGAATTA  342

seq1  AAGGCCTGTAGTAGCACCTCCCAGCTAAATTAGATTTTTGTGTTGTTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGTAGTAGCACCTCCCAGCTAAATTAGATTTTTGTGTTGTTTGG  392

seq1  TTTGGTTTGGTTTTTGAGAGTGTATTTCTCTATTTTAGAGTTCCCCCGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTGGTTTTTGAGAGTGTATTTCTCTATTTTAGAGTTCCCCCGTC  442

seq1  TCACATTTCCTTCTGTAGATCGGTCTGGGCTCTAAAGGTCCACCTCCTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTCCTTCTGTAGATCGGTCTGGGCTCTAAAGGTCCACCTCCTTC  492

seq1  TGTCTGTAGGGAGCTGGGATTAGAATTATGTGCCAGCCCAGCCAGCTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTAGGGAGCTGGGATTAGAATTATGTGCCAGCCCAGCCAGCTCTA  542

seq1  GTTAAATTCTAAAACAGATGCTTACTCCATAGGTTTCACTAGTTAATAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTCTAAAACAGATGCTTACTCCATAGGTTTCACTAGTTAATAAA  592

seq1  TATCTACTTACATAAGGCTAGTCTCAAACTCATCGAACCCAGGCTACCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTTACATAAGGCTAGTCTCAAACTCATCGAACCCAGGCTACCTT  642

seq1  TGCCTCCAGATTTGAGAGATTAAAGGGGTTTGCCACTGTTCTACTTACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGATTTGAGAGATTAAAGGGGTTTGCCACTGTTCTACTTACAG  692

seq1  ATTTATTTTATTAATGACTTGTTCTCTTTGTTTTGGTGTTTTCCCTGAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATTAATGACTTGTTCTCTTTGTTTTGGTGTTTTCCCTGAAT  742

seq1  ATATGAATGTGCACCACATGTATGCCAAGAAAGTGCCCAAGAAGGTCAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTGCACCACATGTATGCCAAGAAAGTGCCCAAGAAGGTCAGA  792

seq1  AGTAGGCTTCAGATTTCAAAAACCTGGAGTCACATCATCAAGTAGGTGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTTCAGATTTCAAAAACCTGGAGTCACATCATCAAGTAGGTGCT  842

seq1  GGGAATAGAAGATTAACAGGTGCTCATTATTGGGCAGCTAACTCCACAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAGAAGATTAACAGGTGCTCATTATTGGGCAGCTAACTCCACAGC  892

seq1  ACCGATCCCACACCTGATTTCATCTTGAGCAAGCGTGCTGGCCTGATCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATCCCACACCTGATTTCATCTTGAGCAAGCGTGCTGGCCTGATCCT  942

seq1  TCCTGGCACATTATCTGTTTTCTTTCTGCTAAGAGTAGCATCTCTCTCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACATTATCTGTTTTCTTTCTGCTAAGAGTAGCATCTCTCTCAG  992

seq1  ACCTACCGTTTTCTGACTGTGTTTGGCTCTGTTAAGAAGTGGACCCAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCGTTTTCTGACTGTGTTTGGCTCTGTTAAGAAGTGGACCCAATT  1042

seq1  ATAATGCTCAGGCTATCCTTCTCTTAACAATATGGCTGAGGATGGGCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTCAGGCTATCCTTCTCTTAACAATATGGCTGAGGATGGGCTTG  1092

seq1  AATTGATCCTCTTGCTTCCAACTTTTGAATTGTGATGTTCTAGGCATGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCCTCTTGCTTCCAACTTTTGAATTGTGATGTTCTAGGCATGGC  1142

seq1  CATATTGTTTGCTGCATGCGGTGCTGGAGAGAGGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTTGCTGCATGCGGTGCTGGAGAGAGGAATTC  1181