BAC Information

Click to search

BAC

Clone NameB6Ng01-286P09
Chromosome6 (Build37)5 (Build37)
Map Location 19,325,974 - 19,326,73094,312,557 - 94,312,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286P09.bB6Ng01-286P09.g
ACCGA085017GA085018
length9821,103
definitionB6Ng01-286P09.b B6Ng01-286P09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,325,974 - 19,326,730)(94,312,557 - 94,312,871)
sequence
gaattctggctcccaaacactctccttctacctgctctcttgttagagca
ccatccccagtttctctatccctccttcttcataatgaattacaacaaac
ttacagtctcatttctcaacactggtaattctttaaaaaacagaatagta
aacaattgagatcttggagaattaccttatcgagcagctgttcttcacag
atgaaactggatgaaaaggtggccaggattacttttgaatttagatatat
gctttccagttaaagataacctacaactcaaggcaacagtataaatagat
cctcttgaagatgagcaaagcatttgaaaaggcatttctctagccgagag
tggtggcacacgcctttaatcccagcacttggtaggcagaggcaggcaga
tttctgagttcaaggccagcctggtctacaaagtgagttccaggacagcc
agggctatgtagagaaaccctgtctcaaaaaaccaaaaagggagagagag
agagagagagagagagagagagagagagagagagagagagagagagaaaa
gtaatttctctgaagaatatcaacaagtagtcaataaacataaaaatcta
tgcataattaattagtcagagaaacaaaaattcaaaaccattctgagatg
atattactcagactctccaatgtcagcagaagaggaactcaaaatcagaa
tctggtgaacatgggcggaagcaaaattttcacaggctgaccaaaatgag
aagatgacacttcccttcctgagcaatttttcagataattaaacatggag
ttatcacagggaaataacaattcacctcctaggtgaatcactcatgagtg
atgaaaacattcacaaagaaaagtagacatagatgtttatagcagcagtt
gtcctattgtaaaaaatggaagagatgccattatcattaaataaataaat
gtaatatgctcatatgagggaattatttattt

gaattctcacctgaggaatacggaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatacaaatcaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccatttgtggtg
ggattgcaagcttgtacaacctctctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagagaatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagtagccttatttataatagccagaagctggaaagaacccagac
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcttaaccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacataatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaagtagttacagagacaaagtatggagctgagacaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcttccaaacgctgacaccattgcatacactagcaagtttttattgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaacac
agaagtgggatgctcacagtctgctattggatagatcacagggctcccaa
tggaaggagctagagaatgcacccaaggagctaaaggatctgcaacccta
taggtggaacaacattatgaactaacaagtagccccgagcttcttgactc
tagctgcaaattgtatcaaagataggcttagtttgcaatcactggaagag
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19325974_19326730
seq2: B6Ng01-286P09.b_50_807

seq1  GAATTCTGGCTCCCAAACACTCTCCTTCTACCTGCTCTCTTGTTAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCCCAAACACTCTCCTTCTACCTGCTCTCTTGTTAGAGCA  50

seq1  CCATCCCCAGTTTCTCTATCCCTCCTTCTTCATAATGAATTACAACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCAGTTTCTCTATCCCTCCTTCTTCATAATGAATTACAACAAAC  100

seq1  TTACAGTCTCATTTCTCAACACTGGTAATTCTTTAAAAAACAGAATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTCATTTCTCAACACTGGTAATTCTTTAAAAAACAGAATAGTA  150

seq1  AACAATTGAGATCTTGGAGAATTACCTTATCGAGCAGCTGTTCTTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGAGATCTTGGAGAATTACCTTATCGAGCAGCTGTTCTTCACAG  200

seq1  ATGAAACTGGATGAAAAGGTGGCCAGGATTACTTTTGAATTTAGATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGGATGAAAAGGTGGCCAGGATTACTTTTGAATTTAGATATAT  250

seq1  GCTTTCCAGTTAAAGATAACCTACAACTCAAGGCAACAGTATAAATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGTTAAAGATAACCTACAACTCAAGGCAACAGTATAAATAGAT  300

seq1  CCTCTTGAAGATGAGCAAAGCATTTGAAAAGGCATTTCTCTAGCCGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAAGATGAGCAAAGCATTTGAAAAGGCATTTCTCTAGCCGAGAG  350

seq1  TGGTGGCACACGCCTTTAATCCCAGCACTTGGTAGGCAGAGGCAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACGCCTTTAATCCCAGCACTTGGTAGGCAGAGGCAGGCAGA  400

seq1  TTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  450

seq1  AGGGCTATGTAGAGAAACCCTGTCTCAAAAAACCAAAAAGGGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATGTAGAGAAACCCTGTCTCAAAAAACCAAAAAGGGAGAGAGAG  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAA  550

seq1  GTAATTTCTCTGAAGAATATCAACAAGTAGTCAATAAACATAAAAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCTCTGAAGAATATCAACAAGTAGTCAATAAACATAAAAATCTA  600

seq1  TGCATAATTAATTAGTCAGAGAAAC-AAAATTCAAAACCATTCTGAGATG  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCATAATTAATTAGTCAGAGAAACAAAAATTCAAAACCATTCTGAGATG  650

seq1  ATATTACTCAGACTCTCCAATGTCAGCAGAAGAGGAACTCAAAATCAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTCAGACTCTCCAATGTCAGCAGAAGAGGAACTCAAAATCAGAA  700

seq1  TCTGGTGAACATGGGCGGAAGCAAAATTTTCACAGGCTGACCAAAATGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGAACATGGGCGGAAGCAAAATTTTCACAGGCTGACCAAAATGAG  750

seq1  AAGATGAC  757
      ||||||||
seq2  AAGATGAC  758


seq1: chr5_94312557_94312871
seq2: B6Ng01-286P09.g_853_1168 (reverse)

seq1  CCTCTCTTTCCAGTGATGGCCGACT-AGGCTATCTTTTGATAC-ATATGT  48
      |||||| |||||||||| ||  ||| || ||||| |||||||| || || 
seq2  CCTCTC-TTCCAGTGATTGCAAACTAAGCCTATC-TTTGATACAATTTGC  48

seq1  AGCTAGAGTCAAG-AGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCC  97
      ||||||||||||| |||||  || |||| |||||||||||||||||||||
seq2  AGCTAGAGTCAAGAAGCTCGGGGCTACTTGTTAGTTCATAATGTTGTTCC  98

seq1  ACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  147
      |||||||||||||||||| ||||||||||||||||| | |||||||||||
seq2  ACCTATAGGGTTGCAGAT-CCTTTAGCTCCTTGGGTGCATTCTCTAGCTC  147

seq1  C-TCCATTGGTAGCCCTGTGATCCATCCATTAGGTGACTGTAAGCAT-CC  195
      | |||||||| |||||||||||| ||||| |||  |||||| ||||| ||
seq2  CTTCCATTGGGAGCCCTGTGATCTATCCAATAGCAGACTGTGAGCATCCC  197

seq1  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTG-TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  246

seq1  CTGGGTCCTTTTGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCATT  295
      |||||||||||  |||||| ||||||||||||||||||||||||||| ||
seq2  CTGGGTCCTTTCAATAAAAACTTGCTAGTGTATGCAATGGTGTCAGCGTT  296

seq1  TGGATGCTGATTATGGGGTG  315
      |||| |||||||||||||||
seq2  TGGAAGCTGATTATGGGGTG  316


| Home | SequenceCutter | Blast | Download |