BAC Information

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BAC

Clone NameB6Ng01-287L19
Chromosome5 (Build37)
Map Location 58,979,862 - 58,980,987
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666465, Pcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287L19.bB6Ng01-287L19.g
ACCGA085579GA085580
length1,1111,165
definitionB6Ng01-287L19.b B6Ng01-287L19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccatttttaatgaggttatttgattt
tctggagttaactttcttgagttctttatatatattggatattagtccct
atctgatttaggataggtaaagatcctttcccaatcttttcatggccttt
ttgtcttattgatggtgtcttttgccttgcagaagatttgcagtttcatc
tgatgctgaatattttattgccatcgtttttattgttgtctttcatttta
gtatcatgtgctataaattgctgcattatttctgctgattagtgtcttcc
tgctcataaagaaattaggggagcagatgagatttaaaaacccttatgat
attcctcctggaggttatacaaacagaaaacaaccaaggaggatgaaact
ttttcatggtacaccttcctgcaagttgcatataggactctagtgataca
cctcttatacaccatagttgtgagttatgctttctgatgttgatactgca
taaatgcctatttttctataagcacaataagtttacaagctcagcaatca
aagcttatagaatcatttcattaaactgtcacagccctctctctatttgg
aggtggggaatacaaatagactccatggtaacaaaaaaaggcaagaattt
atttaaagctatttctgaaatccagtaagaacaagaccgttcttaacttc
atatattttttatctgacaattttcatgccttaatgtaaattgtgtcatc
tagcttatgctagccagttcaagggtcaatgtcttattttgctcatgtaa
taccgaatgcttgtttttttttttttttttcctaaatttgatttttctaa
tcagtagtcaggccttataatttttatggaagctaaatattatgggcaag
cttcatagaaattgggttatacacatttcttaaaaggattttactctggc
ttgaagtatatttatacttacattgctgtagttgtgtgtcaggaggatcg
ggattctctctatttttttatatttttttatacgtatttcctcatacact
catgctatccaagtcacataacctcctctcatttccctactaccaatcca
attttttggcc

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacagccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaataactctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaagagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgagttaacacattcacaaa
ggaactcacataatatgtactcactgataagtggatattagcccaaaacc
taggttaccaagatataagatacaatttcctaaacacatgaaactcaaga
aaaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacatcctttgaaggagttacagaaacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccttaatca
gcatccaaacgctgacaccattgcatacactagcaagattttatctaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggcccccaa
tgggaggagctagagaagtaccaggagctaaagtgatctgcaacctatag
gtggacacatatgactacagtaccccggagctctgattctagctgcatat
atatcaaaaatggctagtcgcattcacttggtagagaaggtcatgacacg
cactttatatgccagtacggcatgccagtccaaatgggattggcggtata
gggaaatggcgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58979862_58980987
seq2: B6Ng01-287L19.b_47_1157

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGAGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGAGGTTATTTGATTT  50

seq1  TCTGGAGTTAACTTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTAACTTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCT  100

seq1  ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTTTTCATGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTTTTCATGGCCTTT  150

seq1  TTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGATTTGCAGTTTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAGATTTGCAGTTTCATC  200

seq1  TGATGCTGAATATTTTATTGCCATCGTTTTTATTGTTGTCTTTCATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGAATATTTTATTGCCATCGTTTTTATTGTTGTCTTTCATTTTA  250

seq1  GTATCATGTGCTATAAATTGCTGCATTATTTCTGCTGATTAGTGTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATGTGCTATAAATTGCTGCATTATTTCTGCTGATTAGTGTCTTCC  300

seq1  TGCTCATAAAGAAATTAGGGGAGCAGATGAGATTTAAAAACCCTTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATAAAGAAATTAGGGGAGCAGATGAGATTTAAAAACCCTTATGAT  350

seq1  ATTCCTCCTGGAGGTTATACAAACAGAAAACAACCAAGGAGGATGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCTGGAGGTTATACAAACAGAAAACAACCAAGGAGGATGAAACT  400

seq1  TTTTCATGGTACACCTTCCTGCAAGTTGCATATAGGACTCTAGTGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGTACACCTTCCTGCAAGTTGCATATAGGACTCTAGTGATACA  450

seq1  CCTCTTATACACCATAGTTGTGAGTTATGCTTTCTGATGTTGATACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTATACACCATAGTTGTGAGTTATGCTTTCTGATGTTGATACTGCA  500

seq1  TAAATGCCTATTTTTCTATAAGCACAATAAGTTTACAAGCTCAGCAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCTATTTTTCTATAAGCACAATAAGTTTACAAGCTCAGCAATCA  550

seq1  AAGCTTATAGAATCATTTCATTAAACTGTCACAGCCCTCTCTCTATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTATAGAATCATTTCATTAAACTGTCACAGCCCTCTCTCTATTTGG  600

seq1  AGGTGGGGAATACAAATAGACTCCATGGTAACAAAAAAAGGCAAGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGAATACAAATAGACTCCATGGTAACAAAAAAAGGCAAGAATTT  650

seq1  ATTTAAAGCTATTTCTGAAATCCAGTAAGAACAAGACCGTTCTTAACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGCTATTTCTGAAATCCAGTAAGAACAAGACCGTTCTTAACTTC  700

seq1  ATATATTTTTTATCTGACAATTTTCATGCCTTAATGTAAATTGTGTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTTATCTGACAATTTTCATGCCTTAATGTAAATTGTGTCATC  750

seq1  TAGCTTATGCTAGCCAGTTCAAGGGTCAATGTCTTATTTTGCTCATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATGCTAGCCAGTTCAAGGGTCAATGTCTTATTTTGCTCATGTAA  800

seq1  TACCGAATGCTTG--TTTTTTTTTTTTTTTCCTAAATTTGATTTTTCTAA  848
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TACCGAATGCTTGTTTTTTTTTTTTTTTTTCCTAAATTTGATTTTTCTAA  850

seq1  TCAGTAGTCAGGCCTTATAATTTTTATGGAAGCTAAATATTATGGGCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTCAGGCCTTATAATTTTTATGGAAGCTAAATATTATGGGCAAG  900

seq1  C-TCATAGAAATTGGGTTATACACA-TTCTTAAAAGGATTTTACTCTGGC  946
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCATAGAAATTGGGTTATACACATTTCTTAAAAGGATTTTACTCTGGC  950

seq1  TTGAAGTATATTTATACTTAACATTTGCTGTAGTTGTGTGTCA-GAGGAT  995
      ||||||||||||||||||| ||| ||||||||||||||||||| ||||||
seq2  TTGAAGTATATTTATACTT-ACA-TTGCTGTAGTTGTGTGTCAGGAGGAT  998

seq1  CGGAATTCCTCTCTATTTTTTTTAATATTTTTTATTACGTATTTTCCTCA  1045
      ||| ||| ||||||||||||||  |||||||||  |||||| ||||||||
seq2  CGGGATT-CTCTCTATTTTTTT--ATATTTTTTTATACGTA-TTTCCTCA  1044

seq1  ATTACACTTCCAATGCTATCCCAAAAGTCCACCATAACCTCCCTCTCATT  1095
        ||||||    |||||||||   |||||   |||||||| |||||||||
seq2  --TACACT---CATGCTATCC---AAGTC--ACATAACCT-CCTCTCATT  1083

seq1  TCCCTACCTACCCATTCCCATTTTTTTGGCC  1126
      |||||| ||||| ||  ||| ||||||||||
seq2  TCCCTA-CTACCAAT--CCAATTTTTTGGCC  1111


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