BAC Information

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BAC

Clone NameB6Ng01-287P14
Chromosome5 (Build37)
Map Location 138,318,308 - 138,319,685
singlet/doubletsinglet
Overlap genenone
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016
Downstream geneLOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287P14.bB6Ng01-287P14.g
ACCGA085758GA085759
length1,185256
definitionB6Ng01-287P14.b B6Ng01-287P14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggtgggcatggtcaaggctgtggtggcctcagtgctggttc
tgtaagaaggtcatcttgtttttacccatgacaaggtgccataggcttcc
tgaagacatgattgtacaagaggaagtggcatcaatctccctgagtgaca
tgtgcagaggcatcttcccatttccttagctttcctggcattgattgtct
tgttcatgattccctgcaactggctatgcagctttccctctctcatgtct
gcttgtctgccttcctcacagagcctgtgttactaagatcccttgacctg
agccagacacaaattgtcatggactcactgccagctacacccagacagac
ttctgtatccatagtacccttggagacagggaggctcagaaactttggga
taagttggctcctgttggaaggtcaatcaggacatggattagggatctaa
aacttgtcagaatgagccttctgtttgtttgcttgtgtctgtgtgtgatt
gtgtgtatgtgtgcttaaaatcatctcaagtatccctggctggtccttga
acttgttatgtagccaaggatgaccatgaactactacagatcctccagca
tggtcctcccatgagctgggattacaggtgcgaaccattgtgtcccttta
tctattgttggacataaaacctttggttctttgcatgtcagaaagtacga
actccaccacatgaaccacattcttagctgcagggaggtctgcaaggatg
tcctggccatgagttctcacctccagatttcttctgcctttcgcttactc
tctggggtttctgggtaaatggtgactcaactgctaactcacctgagaag
gggctggaactgacaagactgccatatgtaatgtgttggacccaagcatt
tttacacaacagcctctgggtgggtttttacagggccccttgtgccctgt
tccactggtgcacctgctggctccttatctcgggtgatgagctcttgtgt
ttcatgtctgggattcagctgatcctggtggagaccctgctgtgggggtg
tgattcctgtcaaggatgctgtcaatcaggttccttgggaggtcatctgc
attccaaatacagtgactaaatgcatgacaatcaactgccttccaaggga
aggtatcttgaatgaccttcgagctttttgggtgg
acagcagctgtggcctccagcatgaaatctgcccaaaatcaagcattgca
ccctgactaacccatcccgggaacattgacagttgatgacatccagaaaa
gacagtcattcctccttaaggatgtggctcctggtagatcaaccacactc
cagtggatgcccccacactcatgaacatatgacagcaggttagtaaacaa
gtacatgaattttgtgggttgtgggagtgactgtggggagggatctggga
tgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138318308_138319685
seq2: B6Ng01-287P14.b_45_1229

seq1  GAATTCAGAGGTGGGCATGGTCAAGGCTGTGGTGGCCTCAGTGCTGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGTGGGCATGGTCAAGGCTGTGGTGGCCTCAGTGCTGGTTC  50

seq1  TGTAAGAAGGTCATCTTGTTTTTACCCATGACAAGGTGCCATAGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGGTCATCTTGTTTTTACCCATGACAAGGTGCCATAGGCTTCC  100

seq1  TGAAGACATGATTGTACAAGAGGAAGTGGCATCAATCTCCCTGAGTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATGATTGTACAAGAGGAAGTGGCATCAATCTCCCTGAGTGACA  150

seq1  TGTGCAGAGGCATCTTCCCATTTCCTTAGCTTTCCTGGCATTGATTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGGCATCTTCCCATTTCCTTAGCTTTCCTGGCATTGATTGTCT  200

seq1  TGTTCATGATTCCCTGCAACTGGCTATGCAGCTTTCCCTCTCTCATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGATTCCCTGCAACTGGCTATGCAGCTTTCCCTCTCTCATGTCT  250

seq1  GCTTGTCTGCCTTCCTCACAGAGCCTGTGTTACTAAGATCCCTTGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTGCCTTCCTCACAGAGCCTGTGTTACTAAGATCCCTTGACCTG  300

seq1  AGCCAGACACAAATTGTCATGGACTCACTGCCAGCTACACCCAGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACACAAATTGTCATGGACTCACTGCCAGCTACACCCAGACAGAC  350

seq1  TTCTGTATCCATAGTACCCTTGGAGACAGGGAGGCTCAGAAACTTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCCATAGTACCCTTGGAGACAGGGAGGCTCAGAAACTTTGGGA  400

seq1  TAAGTTGGCTCCTGTTGGAAGGTCAATCAGGACATGGATTAGGGATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGGCTCCTGTTGGAAGGTCAATCAGGACATGGATTAGGGATCTAA  450

seq1  AACTTGTCAGAATGAGCCTTCTGTTTGTTTGCTTGTGTCTGTGTGTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCAGAATGAGCCTTCTGTTTGTTTGCTTGTGTCTGTGTGTGATT  500

seq1  GTGTGTATGTGTGCTTAAAATCATCTCAAGTATCCCTGGCTGGTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGCTTAAAATCATCTCAAGTATCCCTGGCTGGTCCTTGA  550

seq1  ACTTGTTATGTAGCCAAGGATGACCATGAACTACTACAGATCCTCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTATGTAGCCAAGGATGACCATGAACTACTACAGATCCTCCAGCA  600

seq1  TGGTCCTCCCATGAGCTGGGATTACAGGTGCGAACCATTGTGTCCCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCCCATGAGCTGGGATTACAGGTGCGAACCATTGTGTCCCTTTA  650

seq1  TCTATTGTTGGACATAAAACCTTTGGTTCTTTGCATGTCAGAAAGTACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTGGACATAAAACCTTTGGTTCTTTGCATGTCAGAAAGTACGA  700

seq1  ACTCCACCACATGAACCACATTCTTAGCTGCAGGGAGGTCTGCAAGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCACATGAACCACATTCTTAGCTGCAGGGAGGTCTGCAAGGATG  750

seq1  TCCTGGCCATGAGTTCTCACCTCCAGATTTCTTCTGCCTTTCGCTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCATGAGTTCTCACCTCCAGATTTCTTCTGCCTTTCGCTTACTC  800

seq1  TCTGGGGTTTCTGGGTAAATGGTGACTCAACTGCTAACTCACCTGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTTTCTGGGTAAATGGTGACTCAACTGCTAACTCACCTGAGAAG  850

seq1  GGGCTGGAACTGACAAGACTGCCATATGTAATGTGTTGGACCCAAGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAACTGACAAGACTGCCATATGTAATGTGTTGGACCCAAGCATT  900

seq1  TTTACACAACAGCCTCT-GGTGGG-TTTTACAGGGCCCCTTGTGCCCTGT  948
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TTTACACAACAGCCTCTGGGTGGGTTTTTACAGGGCCCCTTGTGCCCTGT  950

seq1  TCCACTGGTGCCACCTGCTGGCTCCTTAATCTCGGGTGATGAGCTCTGTT  998
      |||||||||| |||||||||||||||| |||||||||||||||||||  |
seq2  TCCACTGGTG-CACCTGCTGGCTCCTT-ATCTCGGGTGATGAGCTCTTGT  998

seq1  GTTTCATGTCTTGGATTCAGCTGAATCCCTGTGGAGACCCTGCTGT-GGG  1047
      ||||||||||| ||||||||||| ||||  |||||||||||||||| |||
seq2  GTTTCATGTCTGGGATTCAGCTG-ATCCTGGTGGAGACCCTGCTGTGGGG  1047

seq1  GTGTGATT-CTGTTCAGGATGCTGTC-ATCAGTTTCCT--GGAGTGTCAT  1093
      |||||||| ||||  ||||||||||| ||||| |||||  |||| |||||
seq2  GTGTGATTCCTGTCAAGGATGCTGTCAATCAGGTTCCTTGGGAG-GTCAT  1096

seq1  CCTGCTTTCCCAATACCAGTGACT--ATGCCCTGCCATCATACTGCTTTC  1141
       |||| |||| |||| ||||||||  ||||    | |||| ||||| |||
seq2  -CTGCATTCCAAATA-CAGTGACTAAATGCATGACAATCA-ACTGCCTTC  1143

seq1  CCAGGGGAGGGGCACTCCCTGGAAATGAGCATTCTGAGCTTTTGGTGTGG  1191
      | |||| |||     |  || | ||||| | ||| |||||||| | ||||
seq2  CAAGGGAAGG-----TATCTTG-AATGA-CCTTC-GAGCTTTTTGGGTGG  1185

seq1  ACACTAGGAGCTTCTGCACACCCTGGGATCATGCAGGTTGTCAGAATGCA  1241
                                                        
seq2  --------------------------------------------------  1185

seq1  ATGTTAGAACATAGTATGGTTTAGTCAGTAGTGCATGTGCGCCCTGCCTC  1291
                                                        
seq2  --------------------------------------------------  1185

seq1  CTACAATATAAATAATTAAGTGTATTAAAAAAAAAAGCCCAAGATGGGTA  1341
                                                        
seq2  --------------------------------------------------  1185

seq1  TGGTAATCTATGTCTTTAATTCAAGCTTTTTGGGTGG  1378
                                           
seq2  -------------------------------------  1185