BAC Information

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BAC

Clone NameB6Ng01-288F06
Chromosome5 (Build37)
Map Location 51,277,885 - 51,278,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F06.bB6Ng01-288F06.g
ACCGA086019GA086020
length1,196943
definitionB6Ng01-288F06.b B6Ng01-288F06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccacagaaaaaaattccaagatgatctagcgtaaagctgagtt
ggaaatatattaacagagattgtaagcacaagagattttacaaagagggg
aagaaggtaggggaagtaaaagcccatctgacattcacagttggcttctt
aatggaaagcaatgattaaatttccctagagtcagtatacaatggacttt
cttgaccctcatgacagccaatggtgataatcatgataccttgatgatag
atacaaaatccctttcttctttaacattgctcaaaagtgcagctcataac
aaggacagaaagtagtaaagattttcttcagtagacaaatatgttaagga
aattcacgaggactagtgtttctgcagatgatatgatggtatacataagc
aaaccccaaaattataccagagaatttctacaactgatacacaactacag
cggcatggccggatataaaattaactcaaataaatcagtagccttccttt
gtaaaaatgataaacaggctgagaaagaaattagtgaaacaactcccttc
ccaacagccaaaaataatataaaatatcttgggtaaccctaacaaaacaa
gtgaaagacctgtatagcaataacttcaagtctctcaagaaagaaaccaa
agatctcagaaaatggagagctctcccaacctcatggattggcagaatta
tcatagtaaaaatggccatcctaccaaaggcaatctacagattcaatgca
atcccagtcaatcccaacaaaattcttcaaagacacagaaagagaaattt
tcaaattcatctgggaaggcaaaaaacccagagaagcaaaaacaattctt
cacaataaaagtacggctggggaaatcaccatccctgacctcaagcttta
ctacagagcaatagtgataaaaccctgcatggtattgatacagagaagac
acattgaccaatggaataaaattcaagactcagaagtaaaagcacacact
cacagaacttgatctatgacaaagacacaaaatatacaatggaaaaaaag
aaagcattcattaatgttgcttgtctaacctgtcgtctgtatgtaggaaa
aatgaaaatgaccatatctggtctctggcacaagctcaagtccaagtgat
taggaacttcacataaaggcccaaatacaccctccaagtctctgat
gaattccgatctcagcacccacatctgctacctcacaaatgcctgtaact
ctagctccaaaagatcttaaataaggcactagactgttggcagacaccaa
cacacaagcgcccacacactcatacagacacacacagagatacacacata
aatgctatgaataaaaataaatcataaaaatagatatgcaattgttagaa
ggaaagaaatctagaaacttcaattatgaaatttcaagtgctcatttatg
atttagtaatttgtaaatttatctattattatccataattttaaatgctt
ttgtaatgaagattgcatttgtaatcagaaataaacatgattaatcttgt
tgaactatcacataaattaaaaattaaagtatgcacagtctcatctgctt
taccctcccagatttcaataactcagaggtttcaaagaggctcaagtttt
atcacaagtgataggcttcctgaataattctcaacaattgaaataacttc
tatttaatttttgtattaactctagatgtcacagctactgaggactaatt
ttttctttccttaccttatgaagacttaggggaagataatggtattgtta
tgtaacaatagaagaaaaataagaccacatctgcagttgctcatattatg
cactgtaacacacagggtggaggagtttccagtattacatcatgctttcc
actctttaatatataacaccttgaactacaatgctagaaacctgagtcac
cattatttattggtttgtctgtctatctatctatctatctatctatctat
ctatctatctatctatctatcatatctatatctacgtatctataatctat
ctatcacctacctatgtctataactaatatgagaaaaatatccaaatctg
atatactacaaatatgtaagaagtgtgtggggggggggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51277885_51278825
seq2: B6Ng01-288F06.g_68_1010

seq1  GAATTCCGATCTCAGCACCCACATCTGCTACCTCACAAATGCCTGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGATCTCAGCACCCACATCTGCTACCTCACAAATGCCTGTAACT  50

seq1  CTAGCTCCAAAAGATCTTAAATAAGGCACTAGACTGTTGGCAGACACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCCAAAAGATCTTAAATAAGGCACTAGACTGTTGGCAGACACCAA  100

seq1  CACACAAGCGCCCACACACTCATACAGACACACACAGAGATACACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCGCCCACACACTCATACAGACACACACAGAGATACACACATA  150

seq1  AATGCTATGAATAAAAATAAATCATAAAAATAGATATGCAATTGTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATGAATAAAAATAAATCATAAAAATAGATATGCAATTGTTAGAA  200

seq1  GGAAAGAAATCTAGAAACTTCAATTATGAAATTTCAAGTGCTCATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAATCTAGAAACTTCAATTATGAAATTTCAAGTGCTCATTTATG  250

seq1  ATTTAGTAATTTGTAAATTTATCTATTATTATCCATAATTTTAAATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTAATTTGTAAATTTATCTATTATTATCCATAATTTTAAATGCTT  300

seq1  TTGTAATGAAGATTGCATTTGTAATCAGAAATAAACATGATTAATCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGAAGATTGCATTTGTAATCAGAAATAAACATGATTAATCTTGT  350

seq1  TGAACTATCACATAAATTAAAAATTAAAGTATGCACAGTCTCATCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATCACATAAATTAAAAATTAAAGTATGCACAGTCTCATCTGCTT  400

seq1  TACCCTCCCAGATTTCAATAACTCAGAGGTTTCAAAGAGGCTCAAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCCAGATTTCAATAACTCAGAGGTTTCAAAGAGGCTCAAGTTTT  450

seq1  ATCACAAGTGATAGGCTTCCTGAATAATTCTCAACAATTGAAATAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTGATAGGCTTCCTGAATAATTCTCAACAATTGAAATAACTTC  500

seq1  TATTTAATTTTTGTATTAACTCTAGATGTCACAGCTACTGAGGACTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTTTTGTATTAACTCTAGATGTCACAGCTACTGAGGACTAATT  550

seq1  TTTTCTTTCCTTACCTTATGAAGACTTAGGGGAAGATAATGGTATTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTACCTTATGAAGACTTAGGGGAAGATAATGGTATTGTTA  600

seq1  TGTAACAATAGAAGAAAAATAAGACCACATCTGCAGTTGCTCATATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAATAGAAGAAAAATAAGACCACATCTGCAGTTGCTCATATTATG  650

seq1  CACTGTAACACACAGGGTGGAGGAGTTTCCAGTATTACATCATGCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAACACACAGGGTGGAGGAGTTTCCAGTATTACATCATGCTTTCC  700

seq1  ACTCTTTAATATATAACACCTTGAACTACAATGCTAGAAACCTGAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAATATATAACACCTTGAACTACAATGCTAGAAACCTGAGTCAC  750

seq1  CATTATTTATTGGTTTGTCTGTCTATCTATCTATCTATCTATCTATCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTATTGGTTTGTCTGTCTATCTATCTATCTATCTATCTATCTAT  800

seq1  CTATCTATCTATCTATCTATCATATCTATATCTACGTATCTATAATCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCATATCTATATCTACGTATCTATAATCTAT  850

seq1  CTATCACCTACCTATGTCTATAACTAATATGAGAAAAATATCCAAATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACCTACCTATGTCTATAACTAATATGAGAAAAATATCCAAATCTG  900

seq1  ATATACTACAAATATGTAAGAAGTGTGT--GGGGGGGGAGGTG  941
      ||||||||||||||||||||||||||||  |||||||||||||
seq2  ATATACTACAAATATGTAAGAAGTGTGTGGGGGGGGGGAGGTG  943