BAC Information

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BAC

Clone NameB6Ng01-288L14
Chromosome5 (Build37)
Map Location 98,257,476 - 98,414,407
singlet/doubletdoublet
Overlap geneAntxr2
Upstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneEG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288L14.bB6Ng01-288L14.g
ACCGA086314GA086315
length1,178585
definitionB6Ng01-288L14.b B6Ng01-288L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,257,476 - 98,258,577)(98,413,824 - 98,414,407)
sequence
gaattcatcgtttttaatagctgagtagtattccattgtgtaaatgcatc
acattttctgtatccattcctctgttgaaggacatctgggttctttccag
cttctggctattataaataaggctgctacgaacatagtagagcatgtgtc
cttattacatgttgaagcatcttctgggtatatgaccaggagtggtatag
ctgggtcctcaaatttgtctaattttctgaggaaccaccagactgatttc
cagagtggttgtaccagcttgcaatcccacaagcaatggaggagtgttcc
tctttctccacatcctcaccagcacctgctgtcacctgaattttttattt
tagccattctgaccgatgtgaggtggaatctcagagttgttttgatttgc
atttccctgatgattaaggatgttgaacatttctttaggtgcttcttggc
cattcgttattcctctgttgaaaattctttgtttagctctgtaccctcat
ttaactctattctacctacagttcttcataaatgctgagtcttttttttt
tttttttttttttttttactttcaataccttctatgttgcttttaggctg
ctggcactttggctaccctgtgactttgctctccctctttagagttcacc
ctaaattcctagactcacaagcttacatttcctcatctacttggagactg
tctagaattacttcttcaaaaactatttgaaattgtttgtctatgttctt
cagatttcacagtctctataaaattatcttcatgtcagacctaagctgtg
atttacaccaagaatattctcataagtgtttctgggatcatatatatttg
ttacttttcatagcttataacttttccacttgaatcctcctctataaggt
aggatgtttatagaataatcctggatactggttcatccccttccagcgtg
tttatttactgaattatttttaggtgggaggttaatacctccgccttact
cctacccattatttaggaaaccttttgattctgttttatccaagacatac
ccttgaataacccacactacacctgagctgacaattcttttggcagtacc
ttgtcctgtccaggacacacccagtgttgtgccctcataattgtccatga
tatttccacatgtgctggaccttaatga
gaattcttgtgctattctggcctttttgcatatttgtcttatttttcaat
ggcattagagtattgatttagttcctgtgacactgtagtatgtaggagtg
ttgacatagagtgttgtgattttgtgtctgtggcactgtagtatgtagga
gtgttcacatagagtgttgtgattttgtgtctgtggcactgtagtatgta
ggagtgttcacatagagtgttgtgattttgtgtctgtggcactgtagtat
gtaggagtgttgacatagagtgttgtgatttagttcctgtggcactgtag
tatgtaggagtgttgacatagagtgttgtgattttgtgtctgtggcactg
tagtatgtaggagtgttcacatagggtgttgtgattttgtgtctgtggca
ctgtagtatgtaggagtgttgacatagagtgttgtgattttgtgtgtgtg
gcactgtagtatgtaggagtgttcacatagagtgttgtgattttgtgtct
gtggcactgtagtatgtaggagtgttcacatagagtatttgtgattttgt
gtctgtggcactgtagtatgtaggagtgttcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98257476_98258577
seq2: B6Ng01-288L14.b_125_1228

seq1  TTGAAGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCT  50

seq1  GCTACGAACATAGTAGAGCATGTGTCCTTATTACATGTTGAAGCATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGAACATAGTAGAGCATGTGTCCTTATTACATGTTGAAGCATCTTC  100

seq1  TGGGTATATGACCAGGAGTGGTATAGCTGGGTCCTCAAATTTGTCTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATATGACCAGGAGTGGTATAGCTGGGTCCTCAAATTTGTCTAATT  150

seq1  TTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACCAGCTTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACCAGCTTGCAA  200

seq1  TCCCACAAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCA  250

seq1  CCTGCTGTCACCTGAATTTTTTATTTTAGCCATTCTGACCGATGTGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCACCTGAATTTTTTATTTTAGCCATTCTGACCGATGTGAGGT  300

seq1  GGAATCTCAGAGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAGAGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  350

seq1  GAACATTTCTTTAGGTGCTTCTTGGCCATTCGTTATTCCTCTGTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTCTTTAGGTGCTTCTTGGCCATTCGTTATTCCTCTGTTGAAAA  400

seq1  TTCTTTGTTTAGCTCTGTACCCTCATTTAACTCTATTCTACCTACAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTAGCTCTGTACCCTCATTTAACTCTATTCTACCTACAGTTC  450

seq1  TTCATAAATGCTGAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATGCTGAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCA  500

seq1  ATACCTTCTATGTTGCTTTTAGGCTGCTGGCACTTTGGCTACCCTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTCTATGTTGCTTTTAGGCTGCTGGCACTTTGGCTACCCTGTGAC  550

seq1  TTTGCTCTCCCTCTTTAGAGTTCACCCTAAATTCCTAGACTCACAAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCCCTCTTTAGAGTTCACCCTAAATTCCTAGACTCACAAGCTT  600

seq1  ACATTTCCTCATCTACTTGGAGACTGTCTAGAATTACTTCTTCAAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTCATCTACTTGGAGACTGTCTAGAATTACTTCTTCAAAAACT  650

seq1  ATTTGAAATTGTTTGTCTATGTTCTTCAGATTTCACAGTCTCTATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATTGTTTGTCTATGTTCTTCAGATTTCACAGTCTCTATAAAAT  700

seq1  TATCTTCATGTCAGACCTAAGCTGTGATTTACA-CAAGAATATTCTCATA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATCTTCATGTCAGACCTAAGCTGTGATTTACACCAAGAATATTCTCATA  750

seq1  AGTGTTTCTGGGATCATATATATTTGTTAC-TTTCATAGCTTATAACTTT  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGTTTCTGGGATCATATATATTTGTTACTTTTCATAGCTTATAACTTT  800

seq1  T-CACTTGAAATCT-CTCTATAA-GTAGGATG-TTATAGAATAAT-CTGG  843
      | ||||||||  || |||||||| |||||||| |||||||||||| ||||
seq2  TCCACTTGAATCCTCCTCTATAAGGTAGGATGTTTATAGAATAATCCTGG  850

seq1  ATACTGGTTCAT-CCCTTCCAGCGTG-TTATTTACTGAATTATTTT--AG  889
      |||||||||||| ||||||||||||| |||||||||||||||||||   |
seq2  ATACTGGTTCATCCCCTTCCAGCGTGTTTATTTACTGAATTATTTTTAGG  900

seq1  TGG--AGTTTATA-CTCCGCCTTACTCCTACCCATTATTTAGGAAA-CTT  935
      |||   ||| ||| |||||||||||||||||||||||||||||||| |||
seq2  TGGGAGGTTAATACCTCCGCCTTACTCCTACCCATTATTTAGGAAACCTT  950

seq1  TTGATTCTG-TTTATCCAAGGACATACCCTTGAATAACCCACAACTACA-  983
      ||||||||| ||||||||| |||||||||||||||||||||| |||||| 
seq2  TTGATTCTGTTTTATCCAA-GACATACCCTTGAATAACCCAC-ACTACAC  998

seq1  CTGAGCTGACAATTCTTTTGGCAGTTATCTTTTGTCTTGTTCCCAGGACA  1033
      |||||||||||||||||||||||| || |  ||||| |||  ||||||||
seq2  CTGAGCTGACAATTCTTTTGGCAG-TACC--TTGTCCTGT--CCAGGACA  1043

seq1  CACCCAGTTGTTGTGCTCCAATAATTGTCAGATGATATTATTTTCAACAA  1083
      ||||||| |||||||| |  |||||||||  ||||||    |||| || |
seq2  CACCCAG-TGTTGTGCCCTCATAATTGTC-CATGATA----TTTCCAC-A  1086

seq1  TGTGCTAGGACCTAAATGA  1102
      |||||| |||||| |||||
seq2  TGTGCT-GGACCTTAATGA  1104

seq1: chr5_98413824_98414407
seq2: B6Ng01-288L14.g_71_655 (reverse)

seq1  ATGTGAACACTCCTACATACTACAGTGCCACAGACACAAAATCAC-AATA  49
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTGAACACTCCTACATACTACAGTGCCACAGACACAAAATCACAAATA  50

seq1  CTCTATGTGAACACTCCTACATACTACAGTGCCACAGACACAAAATCACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTGAACACTCCTACATACTACAGTGCCACAGACACAAAATCACA  100

seq1  ACACTCTATGTGAACACTCCTACATACTACAGTGCCACACACACAAAATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTATGTGAACACTCCTACATACTACAGTGCCACACACACAAAATC  150

seq1  ACAACACTCTATGTCAACACTCCTACATACTACAGTGCCACAGACACAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTCTATGTCAACACTCCTACATACTACAGTGCCACAGACACAAA  200

seq1  ATCACAACACCCTATGTGAACACTCCTACATACTACAGTGCCACAGACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACACCCTATGTGAACACTCCTACATACTACAGTGCCACAGACAC  250

seq1  AAAATCACAACACTCTATGTCAACACTCCTACATACTACAGTGCCACAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACAACACTCTATGTCAACACTCCTACATACTACAGTGCCACAGG  300

seq1  AACTAAATCACAACACTCTATGTCAACACTCCTACATACTACAGTGCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATCACAACACTCTATGTCAACACTCCTACATACTACAGTGCCAC  350

seq1  AGACACAAAATCACAACACTCTATGTGAACACTCCTACATACTACAGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAATCACAACACTCTATGTGAACACTCCTACATACTACAGTGC  400

seq1  CACAGACACAAAATCACAACACTCTATGTGAACACTCCTACATACTACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACAAAATCACAACACTCTATGTGAACACTCCTACATACTACAG  450

seq1  TGCCACAGACACAAAATCACAACACTCTATGTCAACACTCCTACATACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGACACAAAATCACAACACTCTATGTCAACACTCCTACATACTA  500

seq1  CAGTGTCACAGGAACTAAATCAATACTCTAATGCCATTGAAAAATAAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCACAGGAACTAAATCAATACTCTAATGCCATTGAAAAATAAGAC  550

seq1  AAATATGCAAAAAGGCCAGAATAGCACAAGAATTC  584
      |||||||||||||||||||||||||||||||||||
seq2  AAATATGCAAAAAGGCCAGAATAGCACAAGAATTC  585