BAC Information

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BAC

Clone NameB6Ng01-288P07
Chromosome5 (Build37)
Map Location 68,878,642 - 69,027,604
singlet/doubletdoublet
Overlap genenone
Upstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288P07.bB6Ng01-288P07.g
ACCGA086485GA086486
length8311,026
definitionB6Ng01-288P07.b B6Ng01-288P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,026,397 - 69,027,604)(68,878,642 - 68,879,166)
sequence
gaattcacacatatgtgtcttaagattaaatgagtcattcagattgtccc
tttgggatctatgtttaatatttaaataatcaactaattagaaattaggc
ttctcctccaaccaaattaggtaatcatcatttaaaatgttaagtttttt
ttcctttttacataaatgaatttttttttttttttgttttcatgcttgcc
aattttttttccatttttattaggtatttagctcatctacatttccattg
ccacaccaaaagtcccccatacccacccacccccactcccgtacccaccc
actccccctatttggccccggcgttcccctgtactggggcatataaagtt
tgcgtgtccaatgggcctctccttataaatgaattttaaataggaaactt
aactaaatgatttttaaataaaaccacatttgtaagttatgtaccaagta
caatacactaaaattttacctactaagcccagttccagtagatccttcca
caaatcacgtaattttagccgaatctcactgtgaaaaagcaaatattttt
ttcagtcctgtttcagtcagtaactctgtgccctttctaagtgagaatta
caaattctaggtttcaccttcaattaaaagaatgcaaggaaacagccctt
tctcccatccatccccggccaagggcagcctggttttggattcctcgatg
catcactttccattgcccattatctcccacaacagctggtgacacatagt
cactttgctctaggatagctctctcttctctcctccatctgtttcacttc
catttacttcagaaattaatacactgctctt
gaattctttaacaaaaaggataaattattgtttttctagtttttatttat
ttactaatttagttatgttatgtttatttattatgtattaattaattatt
cttttatttatatatcctgacatcagcttcccctccctctatgcttacca
ttcccttacacctaccccatgttcctccaaatccactctgtggtgaggtc
tgccccctctagaatagttgcacccattttgcttcatgcctgccagctat
ttcatgttgttgctgtaaaatgcctgtcagtctttgacgaagaaaaataa
cttaaatcagaacaaggtcatgctgatgacataccctgttatgttttcat
gagctttgttaatcttaagaaattccacaaagctttatgtaggacccatc
aaattaaaggtcaatatgaactgttatgtccaaaatggcttgattcagag
ctgacccccaggaaacacttcctgcacctgcatatgagctcattgtggct
tttgtgtgtttcttcttttctttcataagcctgtccttatggaacaaatg
tttattgtcatagctcagagaattctgagctgtatccctgatctgttctg
atctgatctgatctgatctgatctgatctgatctgttcagtattagggta
tgcatttaataagccatccctgtctgactgagattagtgttcctgtggtt
tgtagagtgatgctcagaccacaatactctgccttcctcagtttcctttc
agaagcaagcagtactcctagggttgtcaacgaaacatagaataaaaggc
tacaataaaactaggcatataatctcttatcaaagcagctaagtaggaca
aggttccaaagaacagtcaaaagagttcactccaatgttaggagtcccat
agtaatgtaaaattatacaattcaaacatatatgcagtgtgtagaccaat
ttttaatccagcagtatgatttctctggaagggatgttcaaagatatatc
cagttgggaggcagatacgtcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69026397_69027604
seq2: B6Ng01-288P07.b_51_881 (reverse)

seq1  AAGAGCAGTGGCTTCAAAATGTATTGATGTCTCTTACAACAGGACATAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTTACTGTTCTGGTGGTCCTTATAGATTCTGACAGTGCTTTCTGATCTTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGGAAATGCAATTAAATGGGCACTTAGGTTTAAAATAAACTTCAGAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCCAATACACACTATGTTCATATATGCTTAACAATCAGCCTTAGCTTCTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATATAAGCTTTCTATATTTTTTTATACAACCTATATAACGTTTCTGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGTCTGTTCAGGTCTTCTATGTCAACATGTGTTTAAAATAAAACTACT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCTGAATGGAGATTTTTCCTTCTCCAAGTGAAGGGATTTAAATTATG  350
                                                        
seq2  --------------------------------------------------  0

seq1  CCGTAGATAAGATGTTGTAAGCAGACCAGCTAGAGCAGTGT-TTTATTTC  399
                                     |||||||||| || |||||
seq2  ------------------------------AAGAGCAGTGTATTAATTTC  20

seq1  TGAAGTAAATGG-AGTGAAACAGATGGAGGAGAGAAGAGAGAGCTTTCCT  448
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TGAAGTAAATGGAAGTGAAACAGATGGAGGAGAGAAGAGAGAGCTATCCT  70

seq1  AGAGCAAAGTGACTATGTGTCACCAGCTGTTGTGGGAGATAATGGGCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGTGACTATGTGTCACCAGCTGTTGTGGGAGATAATGGGCAAT  120

seq1  GGAAAGTGATGCATCGAGGAATCCAAAACCAGGCTGCCCTTGGCCGGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGATGCATCGAGGAATCCAAAACCAGGCTGCCCTTGGCCGGGGA  170

seq1  TGGATGGGAGAAAGGGCTGTTTCCTTGCATTCTTTTAATTGAAGGTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGAGAAAGGGCTGTTTCCTTGCATTCTTTTAATTGAAGGTGAAA  220

seq1  CCTAGAATTTGTAATTCTCACTTAG-AAGGGCACAGAGTTACTGACTGAA  647
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTAGAATTTGTAATTCTCACTTAGAAAGGGCACAGAGTTACTGACTGAA  270

seq1  ACAGGACTGAAAAAAATATTTGCTTTTTCACAGTGAGATTCGGCTAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGAAAAAAATATTTGCTTTTTCACAGTGAGATTCGGCTAAAAT  320

seq1  TACGTGATTTGTGGAAGGATCTACTGGAACTGGGCTTAGTAGGTAAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGATTTGTGGAAGGATCTACTGGAACTGGGCTTAGTAGGTAAAATT  370

seq1  TTAGTGTATTGTACTTGGTACATAACTTACAAATGTGGTTTTATTTAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTATTGTACTTGGTACATAACTTACAAATGTGGTTTTATTTAAAA  420

seq1  ATCATTTAGTTAAGTTTCCTATTTAAAATTCATTTATAAGGAGAGGCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAGTTAAGTTTCCTATTTAAAATTCATTTATAAGGAGAGGCCCA  470

seq1  TTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCGGGGCCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCGGGGCCAA  520

seq1  ATAGGGGGAGTGGGTGGGTACGGGAGTGGGGGTGGGTGGGTATGGGGGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGGAGTGGGTGGGTACGGGAGTGGGGGTGGGTGGGTATGGGGGAC  570

seq1  TTTTGGTGTGGCAATGGAAATGTAGATGAGCTAAATACCTAATAAAAATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGTGGCAATGGAAATGTAGATGAGCTAAATACCTAATAAAAATG  620

seq1  GAAAAAAAATTGGCAAGCATGAAAACAAAAAAAAAAAAAAATTCATTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTGGCAAGCATGAAAACAAAAAAAAAAAAAAATTCATTTAT  670

seq1  GTAAAAAGGAAAAAAAACTTAACATTTTAAATGATGATTACCTAATTTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGGAAAAAAAACTTAACATTTTAAATGATGATTACCTAATTTGG  720

seq1  TTGGAGGAGAAGCCTAATTTCTAATTAGTTGATTATTTAAATATTAAACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGAAGCCTAATTTCTAATTAGTTGATTATTTAAATATTAAACA  770

seq1  TAGATCCCAAAGGGACAATCTGAATGACTCATTTAATCTTAAGACACATA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCCAAAGGGACAATCTGAATGACTCATTTAATCTTAAGACACATA  820

seq1  TGTGTGAATTC  1208
      |||||||||||
seq2  TGTGTGAATTC  831

seq1: chr5_68878642_68879166
seq2: B6Ng01-288P07.g_69_593

seq1  GAATTCTTTAACAAAAAGGATAAATTATTGTTTTTCTAGTTTTTATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACAAAAAGGATAAATTATTGTTTTTCTAGTTTTTATTTAT  50

seq1  TTACTAATTTAGTTATGTTATGTTTATTTATTATGTATTAATTAATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTAGTTATGTTATGTTTATTTATTATGTATTAATTAATTATT  100

seq1  CTTTTATTTATATATCCTGACATCAGCTTCCCCTCCCTCTATGCTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTATATATCCTGACATCAGCTTCCCCTCCCTCTATGCTTACCA  150

seq1  TTCCCTTACACCTACCCCATGTTCCTCCAAATCCACTCTGTGGTGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACACCTACCCCATGTTCCTCCAAATCCACTCTGTGGTGAGGTC  200

seq1  TGCCCCCTCTAGAATAGTTGCACCCATTTTGCTTCATGCCTGCCAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTCTAGAATAGTTGCACCCATTTTGCTTCATGCCTGCCAGCTAT  250

seq1  TTCATGTTGTTGCTGTAAAATGCCTGTCAGTCTTTGACGAAGAAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTGTTGCTGTAAAATGCCTGTCAGTCTTTGACGAAGAAAAATAA  300

seq1  CTTAAATCAGAACAAGGTCATGCTGATGACATACCCTGTTATGTTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCAGAACAAGGTCATGCTGATGACATACCCTGTTATGTTTTCAT  350

seq1  GAGCTTTGTTAATCTTAAGAAATTCCACAAAGCTTTATGTAGGACCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGTTAATCTTAAGAAATTCCACAAAGCTTTATGTAGGACCCATC  400

seq1  AAATTAAAGGTCAATATGAACTGTTATGTCCAAAATGGCTTGATTCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGGTCAATATGAACTGTTATGTCCAAAATGGCTTGATTCAGAG  450

seq1  CTGACCCCCAGGAAACACTTCCTGCACCTGCATATGAGCTCATTGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCCAGGAAACACTTCCTGCACCTGCATATGAGCTCATTGTGGCT  500

seq1  TTTGTGTGTTTCTTCTTTTCTTTCA  525
      |||||||||||||||||||||||||
seq2  TTTGTGTGTTTCTTCTTTTCTTTCA  525