BAC Information

Click to search

BAC

Clone NameB6Ng01-289M14
Chromosome5 (Build37)
Map Location 136,145,222 - 136,277,352
singlet/doubletdoublet
Overlap genePor, 2010310D06Rik, Styxl1, Mdh2
Upstream geneLimk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
Downstream gene2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289M14.bB6Ng01-289M14.g
ACCGA087089GA087090
length1441,115
definitionB6Ng01-289M14.b B6Ng01-289M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,145,222 - 136,145,365)(136,276,249 - 136,277,352)
sequence
caggtctgctagatctacatagtgagaccttgtctaaaaacaaaaaacaa
aaaaccaagagagaaaaaatagtggggagggagaaaagaaaggagagaga
aaaggaaggaaggaaggaaggaaggaaggaaggagggagggagg
gaattctaggcaagcgctaccaactgagcctcttttctttgtaagttaat
tccctcagatattttgttatagtgctaaacaactgcacatatatacacac
aggcatcacatgcatacttcataccatacacacacacacataccacatat
cacacacacacagagagatacacacagactacactcacaagtatcactca
gcacacacagagaatctctctccacccccaagcctgagaaaagaacaagg
gcaatccccctgcctgggcccagccaggcagcctccctctggctgaagct
agagcacagttaacctaattaccatcctgggactgcctggtgcacagctc
agctccccgcccggctgggagcatattaaaaccagcaggagtcggggagg
gagggagccagaggaaagaagctatttttaggtagcaggtgggtttgtaa
cagggctggctggttgagaggggaggggctggacgtcgtgatggggccga
ggtcagggcacagggtaatctgaagaagatctgttgaaactaaatgggga
ccagggcagctatggtctccccagggaagtggagaggggccaagagttga
gagaagagacttggttggttctgagacagagctgtgcctgctggggttgg
ggaccgagacaaaccaccctcaagggtcgctagagcagggaagagcagaa
attactcaaatagacggaagaggtgtgattttgatagcccaccggtggcc
taacacagatagttacccagacacacagacaggcagacatacacaggcac
acacatacagacacagacagacacacacacacacacaagatggacataca
tacacacaaacatggagtagagatgcaacatcttgtccccagtctccaag
ataggagtgtgaccacctggggctcaccagctactccaggagtggctggg
ttttccctgttcaaggccttgatctggggacagcccttttctgtcccccc
tattcaagggtctacttaagatcctggagctccagtcaaggagcacagtt
gaatcacactactacacccacatacacacacacaccactcaccaagacat
gagaacttttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136145222_136145365
seq2: B6Ng01-289M14.b_50_193

seq1  CAGGTCTGCTAGATCTACATAGTGAGACCTTGTCTAAAAACAAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCTAGATCTACATAGTGAGACCTTGTCTAAAAACAAAAAACAA  50

seq1  AAAACCAAGAGAGAAAAAATAGTGGGGAGGGAGAAAAGAAAGGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGAGAGAAAAAATAGTGGGGAGGGAGAAAAGAAAGGAGAGAGA  100

seq1  AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGAGGGAGG  144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGAGGGAGG  144

seq1: chr5_136276249_136277352
seq2: B6Ng01-289M14.g_70_1184 (reverse)

seq1  CAACC--AAGTTCTCATGTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  48
      |||||  |||||||||||||||| ||| ||| |||||||||||| |||| 
seq2  CAACCAAAAGTTCTCATGTCTTG-GTGAGTG-GTGTGTGTGTGTATGTGG  48

seq1  GTGT-GT-GTGTGTTTC-ACTGTGCTCCTTG-CTGGGGCT-CAGGATCTT  93
      |||| || ||||| ||| ||||||||||||| |||| ||| |||||||||
seq2  GTGTAGTAGTGTGATTCAACTGTGCTCCTTGACTGGAGCTCCAGGATCTT  98

seq1  -AGT-GACCCTTG-ATA-GGGGGACAGAAAGGGGCTGTCCCCAGATCAAG  139
       ||| |||||||| ||| |||||||||||| |||||||||||||||||||
seq2  AAGTAGACCCTTGAATAGGGGGGACAGAAAAGGGCTGTCCCCAGATCAAG  148

seq1  GCC-TGAACAGGGAAAA-CCAGCCACTCCTGGAGTAGCTGGTGAGCCCCA  187
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTTGAACAGGGAAAACCCAGCCACTCCTGGAGTAGCTGGTGAGCCCCA  198

seq1  GGTGGTCACACTCCTATCTTGGAGACTGGGGACAAGATGTTGCATCTCTA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCACACTCCTATCTTGGAGACTGGGGACAAGATGTTGCATCTCTA  248

seq1  CTCCATGTTTGTGTGTATGTATGTCCATCTTGTGTGTGTGTGTGTGTCTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTTTGTGTGTATGTATGTCCATCTTGTGTGTGTGTGTGTGTCTG  298

seq1  TCTGTGTCTGTATGTGTGTGCCTGTGTATGTCTGCCTGTCTGTGTGTCTG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGTATGTGTGTGCCTGTGTATGTCTGCCTGTCTGTGTGTCTG  348

seq1  GGTAACTATCTGTGTTAGGCCACCGGTGGGCTATC-AAATCACACCTTCT  386
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GGTAACTATCTGTGTTAGGCCACCGGTGGGCTATCAAAATCACACC-TCT  397

seq1  TCCGTCTATTTGAGTAATTTCTGCTCTTCCCTGCTCTAGCGACCCTTGAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTATTTGAGTAATTTCTGCTCTTCCCTGCTCTAGCGACCCTTGAG  447

seq1  GGTGGTTTGTCTCGGTCCCCAACCCCAGCAGGCACAGCTCTGTCTCAGAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTGTCTCGGTCCCCAACCCCAGCAGGCACAGCTCTGTCTCAGAA  497

seq1  CCAACCAAGTCTCTTCTCTCAACTCTTGGCCCCTCTCCACTTCCCTGGGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAGTCTCTTCTCTCAACTCTTGGCCCCTCTCCACTTCCCTGGGG  547

seq1  AGACCATAGCTGCCCTGGTCCCCATTTAGTTTCAACAGATCTTCTTCAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAGCTGCCCTGGTCCCCATTTAGTTTCAACAGATCTTCTTCAGA  597

seq1  TTACCCTGTGCCCTGACCTCGGCCCCATCACGACGTCCAGCCCCTCCCCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGTGCCCTGACCTCGGCCCCATCACGACGTCCAGCCCCTCCCCT  647

seq1  CTCAACCAGCCAGCCCTGTTACAAACCCACCTGCTACCTAAAAATAGCTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCAGCCAGCCCTGTTACAAACCCACCTGCTACCTAAAAATAGCTT  697

seq1  CTTTCCTCTGGCTCCCTCCCTCCCCGACTCCTGCTGGTTTTAATATGCTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCTGGCTCCCTCCCTCCCCGACTCCTGCTGGTTTTAATATGCTC  747

seq1  CCAGCCGGGCGGGGAGCTGAGCTGTGCACCAGGCAGTCCCAGGATGGTAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCGGGCGGGGAGCTGAGCTGTGCACCAGGCAGTCCCAGGATGGTAA  797

seq1  TTAGGTTAACTGTGCTCTAGCTTCAGCCAGAGGGAGGCTGCCTGGCTGGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTAACTGTGCTCTAGCTTCAGCCAGAGGGAGGCTGCCTGGCTGGG  847

seq1  CCCAGGCAGGGGGATTGCCCTTGTTCTTTTCTCAGGCTTGGGGGTGGAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGGGGGATTGCCCTTGTTCTTTTCTCAGGCTTGGGGGTGGAGA  897

seq1  GAGATTCTCTGTGTGTGCTGAGTGATACTTGTGAGTGTAGTCTGTGTGTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTCTGTGTGTGCTGAGTGATACTTGTGAGTGTAGTCTGTGTGTA  947

seq1  TCTCTCTGTGTGTGTGTGATATGTGGTATGTGTGTGTGTGTATGGTATGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTGTGTGTGTGATATGTGGTATGTGTGTGTGTGTATGGTATGA  997

seq1  AGTATGCATGTGATGCCTGTGTGTATATATGTGCAGTTGTTTAGCACTAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCATGTGATGCCTGTGTGTATATATGTGCAGTTGTTTAGCACTAT  1047

seq1  AACAAAATATCTGAGGGAATTAACTTACAAAGAAAAGAGGCTCAGTTGGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATATCTGAGGGAATTAACTTACAAAGAAAAGAGGCTCAGTTGGT  1097

seq1  AGCGCTTGCCTAGAATTC  1104
      ||||||||||||||||||
seq2  AGCGCTTGCCTAGAATTC  1115