BAC Information

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BAC

Clone NameB6Ng01-290A12
Chromosome5 (Build37)
Map Location 11,519,045 - 11,520,162
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041395, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986
Downstream geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290A12.bB6Ng01-290A12.g
ACCGA087272GA087273
length1,1861,120
definitionB6Ng01-290A12.b B6Ng01-290A12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaaatccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatagattcac
attcttctacacgataacaaacagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatgtttttagcttcctattcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccaagcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaagggtgttgtttccctaatttctttctcagcctgt
ttattctttgtatagagaaaggccatgacttgttgagtttattttttata
tccagctacttcacggaagctgcttatcagcttaggaagttccttctggt
tagaatttttaggttcacttatatatacctatcatatcatctgcaaaagg
gaatattttgaaccttcccctctttttccaaaagtg
gaattcaaaaataatctgaaaaccgtaagcacctttgctatggcttcttt
aacgaactgttttcagtaaataaaaatgatcgatgagttacacatcttag
atattaagaaactgattgaagagagggattcagcagcagaatgcaataaa
agggagactactcaaaagacaaaagaaagaaaacctcagacagccaagat
aacaccctcatttggatgtgagatgattagaagataaacaatgaaaaaaa
aaaaggtcagcagaggtggatctcagttacttagaaaggataaaatgcaa
taattataacaacaggctcatcaaaacaaatgtgaacccacaacaaacaa
tggcctcctcagatcccttctatgcagtagagggtggaaggtaaagttag
cccacaggaaaaaagcacatagcacaacaaagacttatcacagcttcaaa
ctcaattgttcttcatgaattgtaaaaatgttcagtacagactaaacaag
aatgtgttaaaatttgtatcatcagtttccttgaaaaaagacctttatgg
aagtatatgaaaggactttgtagaaaaatgtatttatgcagtaggcagaa
ataagaaggatatctagaaatatctatattatgtaagtacaggatatagt
caatacataacaatgtttcagaacctagcattttgtgctatgagttttaa
gaatgaaaggaaaagtttccaggtaatgtttctttcaaacaaatgcctga
ggctaaggatctggactggggataaaccagcagcattcgtggcacatgtg
gtatctagggccacagaagttacgagattctgtgactatttacgtagtat
gccaaactcttacttcgagagtaaccacagattagattttcaaagattgc
ctagtgaagctgatatgaattgccagaatacagttttgccttagaagaat
gtatatgcttctaattaggaaaaataaggactgatatacctctaccacaa
cccccaccaaatcatcaatgatgtttttcacttctaggattgtaagaaga
tgcactttcccctatataccttccagataactggacagacctttgcaatg
tttatgtgacaagagtcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11519045_11520162
seq2: B6Ng01-290A12.g_66_1185

seq1  GAATTCAAAAATAATCTGAAAACCGTAAGCACCTTTGCTATGGCTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAATCTGAAAACCGTAAGCACCTTTGCTATGGCTTCTTT  50

seq1  AACGAACTGTTTTCAGTAAATAAAAATGATCGATGAGTTACACATCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACTGTTTTCAGTAAATAAAAATGATCGATGAGTTACACATCTTAG  100

seq1  ATATTAAGAAACTGATTGAAGAGAGGGATTCAGCAGCAGAATGCAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAAACTGATTGAAGAGAGGGATTCAGCAGCAGAATGCAATAAA  150

seq1  AGGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCAAGAT  200

seq1  AACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAAAA  250

seq1  AAAAGGTCAGCAGAGGTGGATCTCAGTTACTTAGAAAGGATAAAATGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAGCAGAGGTGGATCTCAGTTACTTAGAAAGGATAAAATGCAA  300

seq1  TAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAAACAA  350

seq1  TGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGGTAAAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGGTAAAGTTAG  400

seq1  CCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTTCAAA  450

seq1  CTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAACAAG  500

seq1  AATGTGTTAAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTAAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTTATGG  550

seq1  AAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGCAGAA  600

seq1  ATAAGAAGGATATCTAGAAATATCTATATTATGTAAGTACAGGATATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGATATCTAGAAATATCTATATTATGTAAGTACAGGATATAGT  650

seq1  CAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTTTTAA  700

seq1  GAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGCCTGA  750

seq1  GGCTAAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTGGCACATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTGGCACATGTG  800

seq1  GTATCTAGGGCCACAGAAGTTACGAGATTCTGTGACTATTTACGTAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGGGCCACAGAAGTTACGAGATTCTGTGACTATTTACGTAGTAT  850

seq1  GCCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAAGATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAAGATTGC  900

seq1  CTAGTGAAGCTGATATGAATTGCCAGAATACAGTTTTGCCTTAG-AGAAT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAGTGAAGCTGATATGAATTGCCAGAATACAGTTTTGCCTTAGAAGAAT  950

seq1  GTATATGCTTCTAATTAGGAAAAATAAGGACTGATATACCTCTACCACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCTTCTAATTAGGAAAAATAAGGACTGATATACCTCTACCACAA  1000

seq1  CCCCACCCAAATCAATCAAATGAATGTTTTTCACTTCTAGGA-TGT-AGA  1047
      ||||  ||||||| ||| |||| ||||||||||||||||||| ||| |||
seq2  CCCCCACCAAATC-ATC-AATG-ATGTTTTTCACTTCTAGGATTGTAAGA  1047

seq1  AGATGCACTTCCCCCTATA---CCTCCAGATTAACTGGACAAGACTTTGC  1094
      |||||||||| ||||||||   | |||||| ||||||||||   ||||||
seq2  AGATGCACTTTCCCCTATATACCTTCCAGA-TAACTGGACAGACCTTTGC  1096

seq1  -ATG-TTATGTGGACCAAGAGCCAGG  1118
       ||| |||||||   |||||| ||||
seq2  AATGTTTATGTG--ACAAGAGTCAGG  1120