BAC Information

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BAC

Clone NameB6Ng01-290G23
Chromosome5 (Build37)
Map Location 104,660,940 - 104,838,370
singlet/doubletdoublet
Overlap geneLOC100041145, Ibsp, Mepe
Upstream gene4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1
Downstream geneSpp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290G23.bB6Ng01-290G23.g
ACCGA087578GA087579
length1,1241,094
definitionB6Ng01-290G23.b B6Ng01-290G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,837,271 - 104,838,370)(104,660,940 - 104,662,035)
sequence
gaattcattacttttttggacaataatagcccaggctggcccagaactca
ccaggcagagcagggtggtcttgaatccatgattatcctcctgcctcagt
ttcccaaatactgtcgttataggcataattcaccatacccacatttcaga
tatgttctgtgattctgtgtctggttgttcttctaaagtttgggccaaac
aaagattttcaaatcttagctgagggcaaggaatgttttgaacaacaact
cagtggattctgaaaacaataagcatccgtattgctgatgtgcacagctt
tgggatctcagagggtgagcctaggctagtgactgctgcaagctgtgcac
tcattctcagaggtgtcatggctgttttgggaatatagcttcctttttgg
aaatagagcggtgaatgttgtttccagtttctagaccatttgaaatctac
agaagtcaccaaaatataacatttcaaaactgttgaatttttattatttt
aatttctgaaaaccatagaactcaaaggaactgagccccacggtgggatt
ttcgagctcctgcttggtggaaacgccttcaccacagcccgttacatcat
catcagcccacaggtggaaactgaacataaacagaagtaaattatacaaa
ctctgtttatagagactgttctttggtcatttccagtcttttccattctc
tttggtcccactctgagcaccatggtaagtgcgctgtgttggtacctaga
cttcattgttataaccaccatagatcttgaatgctttgcggtcatgaata
tttttgggtttctgttagcatctctcagggtgatgtaacaaataaaaact
tcttttctctttccctttctcattcttttaactctccctcatccccacct
tttccttccttcatctcccctgttctctcctgtctttcctcttgtgctga
ctcaacccagagctctgcgttctcatgctgaagattccccacacgataca
aatacgttgttataagaacttctggacgacccctgcagtcgtttatacac
ttgttttaaatatttcttctttatagaagttttttatttattttccaggt
ctctctgagcaaagagaaagggtg
gaattccacataaattccttacatatatcgactgcctagtacaagttttc
cagaagtctcaagccattgtttttgaatctagttttctttttgaattatc
atcatgtgcaccatctgaagagctctgcatccttgctttttgagtacttt
actggattcttatatctacctctctactcaccctatcccttccaataccc
caacactagctaggtaagaaagaacgttagagaggaaaggggtgtggatc
tctttagaatcagtcctgctaattaggggcatcaagttccttgggggcaa
gtccactcttcattgtcaggatagctccagtttctttcttctcatctctt
tgttcacggccacttgacaaactgcagcaacaggaaccaccacaagtaga
gggaacaactgcttccacagcctctcaggactctggcatttttatacctt
ctcaagagaccctagaattccacgtgtaaaaatctaccttcagctggaag
aatcacgcctttgccagagcatgagacaaatcatagttagctgctgtgta
cgatctgaagcagccccacatcccacacctagtattaaaataagcatatt
cacagaacataactgggtttttaaagaaatcagcattcctactatactaa
ctttccttgattccactctaacctgcggagaggaaaaaaaatctttgaag
ggaaggaaacaccctttccctctataggataaggtttaagtagtacacat
ggactctcagatcccacctctgagtctacagagggctcagggaggcaaaa
tctacagaactacagtactacagaataatctttctaagactaaaagaata
atgatgagaaaaattacaaatacaaatattttttctaccataacagccct
gctgttaatggatacatgcatttatagactcttttttttaaaaaaaatct
aatttgatgtcgatcattcatctgggttgggccggtagaaaattcaattg
tactcactcttagcagccacttttctgacagactgtgagagtttttaggc
taacacaggacaaatgtctggttgagcctgccttgatgaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104837271_104838370
seq2: B6Ng01-290G23.b_45_1168 (reverse)

seq1  CACCC--TCTCTT--CTCAGAGA---CTG--AAATAA--TAAAAACTTCT  39
      |||||  ||||||  ||||||||   |||  ||||||   ||||||||||
seq2  CACCCTTTCTCTTTGCTCAGAGAGACCTGGAAAATAAATAAAAAACTTCT  50

seq1  A-----AAGAGATATTT-AAACAAGTGTATAA--CACTGCA-GGGTTGTC  80
      |     |||| |||||| ||||||||||||||   |||||| |||| |||
seq2  ATAAAGAAGAAATATTTAAAACAAGTGTATAAACGACTGCAGGGGTCGTC  100

seq1  CAGAAGTTC-TAT-ACAACGTA-TTGTATCGTGTGGGGAATC-TCAGCAT  126
      ||||||||| ||| |||||||| ||||||||||||||||||| |||||||
seq2  CAGAAGTTCTTATAACAACGTATTTGTATCGTGTGGGGAATCTTCAGCAT  150

seq1  GAGAACGCAGAGCTCTGGGTTTGAGTCAGCACAAGAGGAAAGACAGGAGA  176
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAACGCAGAGCTCTGGG-TTGAGTCAGCACAAGAGGAAAGACAGGAGA  199

seq1  GAACAGGGGAGATGAAGGAAGGAAAAGGTGGGGATGAGGGAGAGTTAAAA  226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGGAGATGAAGGAAGGAAAAGGTGGGGATGAGGGAGAGTTAAAA  249

seq1  GAATGAGAAAGGGAAAGAG-AAAGAAGTTTTTATTTGTTACATCACCCTG  275
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATGAGAAAGGGAAAGAGAAAAGAAGTTTTTATTTGTTACATCACCCTG  299

seq1  AGAGATGCTAACAGAAACCCAAAAATATTCATGACCGCAAAGCATTCAAG  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTAACAGAAACCCAAAAATATTCATGACCGCAAAGCATTCAAG  349

seq1  ATCTATGGTGGTTATAACAATGAAGTCTAGGTACCAACACAGCGCACTTA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGGTGGTTATAACAATGAAGTCTAGGTACCAACACAGCGCACTTA  399

seq1  CCATGGTGCTCAGAGTGGGACCAAAGAGAATGGAAAAGACTGGAAATGAC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGCTCAGAGTGGGACCAAAGAGAATGGAAAAGACTGGAAATGAC  449

seq1  CAAAGAACAGTCTCTATAAACAGAGTTTGTATAATTTACTTCTGTTTATG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACAGTCTCTATAAACAGAGTTTGTATAATTTACTTCTGTTTATG  499

seq1  TTCAGTTTCCACCTGTGGGCTGATGATGATGTAACGGGCTGTGGTGAAGG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCCACCTGTGGGCTGATGATGATGTAACGGGCTGTGGTGAAGG  549

seq1  CGTTTCCACCAAGCAGGAGCTCGAAAATCCCACCGTGGGGCTCAGTTCCT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCACCAAGCAGGAGCTCGAAAATCCCACCGTGGGGCTCAGTTCCT  599

seq1  TTGAGTTCTATGGTTTTCAGAAATTAAAATAATAAAAATTCAACAGTTTT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTATGGTTTTCAGAAATTAAAATAATAAAAATTCAACAGTTTT  649

seq1  GAAATGTTATATTTTGGTGACTTCTGTAGATTTCAAATGGTCTAGAAACT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTATATTTTGGTGACTTCTGTAGATTTCAAATGGTCTAGAAACT  699

seq1  GGAAACAACATTCACCGCTCTATTTCCAAAAAGGAAGCTATATTCCCAAA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACATTCACCGCTCTATTTCCAAAAAGGAAGCTATATTCCCAAA  749

seq1  ACAGCCATGACACCTCTGAGAATGAGTGCACAGCTTGCAGCAGTCACTAG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATGACACCTCTGAGAATGAGTGCACAGCTTGCAGCAGTCACTAG  799

seq1  CCTAGGCTCACCCTCTGAGATCCCAAAGCTGTGCACATCAGCAATACGGA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTCACCCTCTGAGATCCCAAAGCTGTGCACATCAGCAATACGGA  849

seq1  TGCTTATTGTTTTCAGAATCCACTGAGTTGTTGTTCAAAACATTCCTTGC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTGTTTTCAGAATCCACTGAGTTGTTGTTCAAAACATTCCTTGC  899

seq1  CCTCAGCTAAGATTTGAAAATCTTTGTTTGGCCCAAACTTTAGAAGAACA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTAAGATTTGAAAATCTTTGTTTGGCCCAAACTTTAGAAGAACA  949

seq1  ACCAGACACAGAATCACAGAACATATCTGAAATGTGGGTATGGTGAATTA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACAGAATCACAGAACATATCTGAAATGTGGGTATGGTGAATTA  999

seq1  TGCCTATAACGACAGTATTTGGGAAACTGAGGCAGGAGGATAATCATGGA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAACGACAGTATTTGGGAAACTGAGGCAGGAGGATAATCATGGA  1049

seq1  TTCAAGACCACCCTGCTCTGCCTGGTGAGTTCTGGGCCAGCCTGGGCTAT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCACCCTGCTCTGCCTGGTGAGTTCTGGGCCAGCCTGGGCTAT  1099

seq1  TATTGTCCAAAAAAGTAATGAATTC  1100
      |||||||||||||||||||||||||
seq2  TATTGTCCAAAAAAGTAATGAATTC  1124

seq1: chr5_104660940_104662035
seq2: B6Ng01-290G23.g_64_1157

seq1  GAATTCCACATAAATTCCTTACATATATCGACTGCCTAGTACAAGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATAAATTCCTTACATATATCGACTGCCTAGTACAAGTTTTC  50

seq1  CAGAAGTCTCAAGCCATTGTTTTTGAATCTAGTTTTCTTTTTGAATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTCAAGCCATTGTTTTTGAATCTAGTTTTCTTTTTGAATTATC  100

seq1  ATCATGTGCACCATCTGAAGAGCTCTGCATCCTTGCTTTTTGAGTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGCACCATCTGAAGAGCTCTGCATCCTTGCTTTTTGAGTACTTT  150

seq1  ACTGGATTCTTATATCTACCTCTCTACTCACCCTATCCCTTCCAATACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTCTTATATCTACCTCTCTACTCACCCTATCCCTTCCAATACCC  200

seq1  CAACACTAGCTAGGTAAGAAAGAACGTTAGAGAGGAAAGGGGTGTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAGCTAGGTAAGAAAGAACGTTAGAGAGGAAAGGGGTGTGGATC  250

seq1  TCTTTAGAATCAGTCCTGCTAATTAGGGGCATCAAGTTCCTTGGGGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAATCAGTCCTGCTAATTAGGGGCATCAAGTTCCTTGGGGGCAA  300

seq1  GTCCACTCTTCATTGTCAGGATAGCTCCAGTTTCTTTCTTCTCATCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCTTCATTGTCAGGATAGCTCCAGTTTCTTTCTTCTCATCTCTT  350

seq1  TGTTCACGGCCACTTGACAAACTGCAGCAACAGGAACCACCACAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGGCCACTTGACAAACTGCAGCAACAGGAACCACCACAAGTAGA  400

seq1  GGGAACAACTGCTTCCACAGCCTCTCAGGACTCTGGCATTTTTATACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAACTGCTTCCACAGCCTCTCAGGACTCTGGCATTTTTATACCTT  450

seq1  CTCAAGAGACCCTAGAATTCCACGTGTAAAAATCTACCTTCAGCTGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGACCCTAGAATTCCACGTGTAAAAATCTACCTTCAGCTGGAAG  500

seq1  AATCACGCCTTTGCCAGAGCATGAGACAAATCATAGTTAGCTGCTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGCCTTTGCCAGAGCATGAGACAAATCATAGTTAGCTGCTGTGTA  550

seq1  CGATCTGAAGCAGCCCCACATCCCACACCTAGTATTAAAATAAGCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTGAAGCAGCCCCACATCCCACACCTAGTATTAAAATAAGCATATT  600

seq1  CACAGAACATAACTGGGTTTTTAAAGAAATCAGCATTCCTACTATACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACATAACTGGGTTTTTAAAGAAATCAGCATTCCTACTATACTAA  650

seq1  CTTTCCTTGATTCCACTCTAACCTGCGGAGAGGAAAAAAAATCTTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGATTCCACTCTAACCTGCGGAGAGGAAAAAAAATCTTTGAAG  700

seq1  GGAAGGAAACACCCTTTCCCTCTATAGGATAAGGTTTAAGTAGTACACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAACACCCTTTCCCTCTATAGGATAAGGTTTAAGTAGTACACAT  750

seq1  GGACTCTCAGATCCCACCTCTGAGTCTACAGAGGGCTCAGGGAGGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCAGATCCCACCTCTGAGTCTACAGAGGGCTCAGGGAGGCAAAA  800

seq1  TCTACAGAACTACAGTACTACAGAATAATCTTTCTAAGACTAAAAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAACTACAGTACTACAGAATAATCTTTCTAAGACTAAAAGAATA  850

seq1  ATGATGAGAAAAATTACAAATACAAATA-TTTTTCTACCATAACAGCCCT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATGAGAAAAATTACAAATACAAATATTTTTTCTACCATAACAGCCCT  900

seq1  GCTGTTAATGGATACATGCATTTATAGACTCTTTTTTTTAAAAAAAAATC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTGTTAATGGATACATGCATTTATAGACTCTTTTTTTT-AAAAAAAATC  949

seq1  TAAATTTGATGTCGATCATTCATCT-GGTTGGGCCGGTAGAAAATTCAAT  998
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  T-AATTTGATGTCGATCATTCATCTGGGTTGGGCCGGTAGAAAATTCAAT  998

seq1  TGTACTCACTCTTAGCAGCCACTTTTCTGACAGGACTGTGAGAAGTTTTT  1048
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TGTACTCACTCTTAGCAGCCACTTTTCTGACA-GACTGTGAG-AGTTTTT  1046

seq1  AGGGCTTACACAGGACCAATGTCTGG-TGAGCTTG-CTTGATGAACCACT  1096
      | |||| ||||||||| ||||||||| ||||| || ||||||| ||||||
seq2  A-GGCTAACACAGGACAAATGTCTGGTTGAGCCTGCCTTGATG-ACCACT  1094