BAC Information

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BAC

Clone NameB6Ng01-290N06
Chromosome5 (Build37)
Map Location 12,148,357 - 12,149,475
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290N06.g
ACCGA087872
length1,111
definitionB6Ng01-290N06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattaagatttttcctctgaatatgaaccaaggtgcacatagga
tattgagccagcatatgaaacaggcttggtggcagacttcaagcactgca
aatccagctcccctaagtcttagctgggtgtccttcatatttctcaagga
agtccttcttcctccagtaaattggaaaaatatcctactgcattaaaaaa
ttgtgggtatgaagtgagataaagttgatgactagccacaatatgccaga
gcagtagatgttaaacataattgtctctgtcttctcactgccagcaaatt
ccggagtcagaaaatgcagttacattttactctgaaacaaaagatattaa
ttggactgttttgatttttactttattctttttatatttccttcctttgc
attaataaaagggtagtaaagtcagttaaaactgaggaataaatatggta
gccttacaaaagtggaaaggtttggagacaactccatatatcaacttgat
ttggtataacaaagcacattttacactaaaccatcatagtatacaatact
agtaaatttgattttacatgattatttaaaataatgagatgaaattaaaa
gaagagttcagcaaatgagggtgcatttaagtttgctattcatcagaaca
tgtaatatcactcaaatctatccgttaaatgtggctttacactaatttat
ttgatccacagagctgtgtgtatcatccacttcgttaatcgcttcactgg
atcttcctgaatgtccaataaaaaatagtactactatcaccaaagtattt
tctaactccaaaacttaggagttattttctttccttgtgtctcctcagct
gcacatccaaacatgtttcctcgagtgcagctcagaataaacccccaatc
catatacctttgcttcaggtcttctaacagactgcagagccatatttgat
gattctcagttggacttagcctgagatcactctgaaatcattgaccatgt
ctctgagtttgaactgtctatctccatgttcacattagctacttatctgt
gcttaatttgctattttgtgaatgcaaatcctaggctgggccgatgctca
tcagtcaaggg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12148357_12149475
seq2: B6Ng01-290N06.g_65_1175 (reverse)

seq1  CCCTTGACTGATGAGCCATCGCCCAAGCCCTAAGAATTTGCATTTCAACA  50
      ||||||||||||||| ||||| || ||||   || |||||||||   |||
seq2  CCCTTGACTGATGAG-CATCGGCCCAGCC--TAGGATTTGCATT--CACA  45

seq1  AAATAGGCAAATAAACCACAGATTAGTAGCTAAATGTGACCATGGGAGAT  100
      ||||| |||||| || ||||||| ||||||| ||||||| ||| ||||||
seq2  AAATA-GCAAATTAAGCACAGATAAGTAGCT-AATGTGAACAT-GGAGAT  92

seq1  AGACAGTTCAAACTCAGAGACATGGTCAATGATTTCAGAGTGATCTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTCAAACTCAGAGACATGGTCAATGATTTCAGAGTGATCTCAGG  142

seq1  CTAAGTCCCACTGAGAATCATCAAATATGGCTCTGCAGTCTGTTAGAAGA  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCCAACTGAGAATCATCAAATATGGCTCTGCAGTCTGTTAGAAGA  192

seq1  CCTGAAGC-AAGGTATATGGATTGGGGGTTTATTCTGAAGCTGCACTCGA  249
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGAAGCAAAGGTATATGGATTGGGGGTTTATTCTG-AGCTGCACTCGA  241

seq1  GGAAACATGTTTGGATGTGCAGCTGAGGAGACACAAGGAAAGAAAATAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTTTGGATGTGCAGCTGAGGAGACACAAGGAAAGAAAATAAC  291

seq1  TCCTAAGTTTTGGAGTTAGAAAATACTTTGGTGATAGTAGTACTATTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTTTTGGAGTTAGAAAATACTTTGGTGATAGTAGTACTATTTTT  341

seq1  TATTGGACATTCAGGAAGATCCAGTGAAGCGATTAACGAAGTGGATGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACATTCAGGAAGATCCAGTGAAGCGATTAACGAAGTGGATGATA  391

seq1  CACACAGCTCTGTGGATCAAATAAATTAGTGTAAAGCCACATTTAACGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTCTGTGGATCAAATAAATTAGTGTAAAGCCACATTTAACGGA  441

seq1  TAGATTTGAGTGATATTACATGTTCTGATGAATAGCAAACTTAAATGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGAGTGATATTACATGTTCTGATGAATAGCAAACTTAAATGCAC  491

seq1  CCTCATTTGCTGAACTCTTCTTTTAATTTCATCTCATTATTTTAAATAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTGCTGAACTCTTCTTTTAATTTCATCTCATTATTTTAAATAAT  541

seq1  CATGTAAAATCAAATTTACTAGTATTGTATACTATGATGGTTTAGTGTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAATCAAATTTACTAGTATTGTATACTATGATGGTTTAGTGTAA  591

seq1  AATGTGCTTTGTTATACCAAATCAAGTTGATATATGGAGTTGTCTCCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTTGTTATACCAAATCAAGTTGATATATGGAGTTGTCTCCAAA  641

seq1  CCTTTCCACTTTTGTAAGGCTACCATATTTATTCCTCAGTTTTAACTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCACTTTTGTAAGGCTACCATATTTATTCCTCAGTTTTAACTGAC  691

seq1  TTTACTACCCTTTTATTAATGCAAAGGAAGGAAATATAAAAAGAATAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACCCTTTTATTAATGCAAAGGAAGGAAATATAAAAAGAATAAAG  741

seq1  TAAAAATCAAAACAGTCCAATTAATATCTTTTGTTTCAGAGTAAAATGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAAAACAGTCCAATTAATATCTTTTGTTTCAGAGTAAAATGTA  791

seq1  ACTGCATTTTCTGACTCCGGAATTTGCTGGCAGTGAGAAGACAGAGACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTTCTGACTCCGGAATTTGCTGGCAGTGAGAAGACAGAGACAA  841

seq1  TTATGTTTAACATCTACTGCTCTGGCATATTGTGGCTAGTCATCAACTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTAACATCTACTGCTCTGGCATATTGTGGCTAGTCATCAACTTT  891

seq1  ATCTCACTTCATACCCACAATTTTTTAATGCAGTAGGATATTTTTCCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTCATACCCACAATTTTTTAATGCAGTAGGATATTTTTCCAAT  941

seq1  TTACTGGAGGAAGAAGGACTTCCTTGAGAAATATGAAGGACACCCAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAGGAAGAAGGACTTCCTTGAGAAATATGAAGGACACCCAGCTA  991

seq1  AGACTTAGGGGAGCTGGATTTGCAGTGCTTGAAGTCTGCCACCAAGCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGGGGAGCTGGATTTGCAGTGCTTGAAGTCTGCCACCAAGCCTG  1041

seq1  TTTCATATGCTGGCTCAATATCCTATGTGCACCTTGGTTCATATTCAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATGCTGGCTCAATATCCTATGTGCACCTTGGTTCATATTCAGAG  1091

seq1  GAAAAATCTTAATTGAATTC  1119
      ||||||||||||||||||||
seq2  GAAAAATCTTAATTGAATTC  1111