BAC Information

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BAC

Clone NameB6Ng01-291D22
Chromosome5 (Build37)
Map Location 72,552,063 - 72,689,760
singlet/doubletdoublet
Overlap geneCommd8, Atp10d
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
Downstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291D22.bB6Ng01-291D22.g
ACCGA088183GA088184
length1,1711,108
definitionB6Ng01-291D22.b B6Ng01-291D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,552,063 - 72,553,241)(72,688,631 - 72,689,760)
sequence
gaattctctttccttacacaagggtggcctgatgcttaagcagtaagctc
ctgtgtgatggatcgagttcaagcaagcgcataccttattagcggcctcc
aaggagctgatcagactctgtaactcctctttactcatctcaacagtgta
cggtttcactttgtcatcttccttcacatccagatgaaggttcaaaaggg
gcatctgcaaggtggcaatcttgtcactagaaagcgcgagctgtggaaag
gagaggagaataatgcacagtattacacagcatgctgacaccactcaaca
aataccagggctggggaagagctcgcatcccagtgtttcccaggatgctc
acaaattctgggaaacaagagaataaactaaccctgtggcagaacacaca
gtcagagagcaggaagcgagagaaaaggagacaaaacacatacaggaagt
gggcaggaagaaaggaaactgcggtttgtccagctaaacagaatactttt
aattctagattgaaatcatggtttactatagaaatgcagaaggactaaaa
gtgtccaatacataaagaatcagaattgttatagaaaagattccaagatg
acagttcatgtagaagacagtctaaagacactcagaaactcttacgaatt
aagcaacttacctcatgactggctaccaaaactgttgatgctacccaaag
ggcgtctagtcttcttctaacgtatctacagcatctgcaattggcttgac
ctttcccagctacagagcctccagtgttaagaatcttcataaatcatgat
tctaattaaattcctggtcattctttcctggcgggggtcctacttgttta
ggtatttaagttgggcaatgaaaactaaagggaattaataagctgatgca
aaagcctgcacacttgaaaacagcatccacaggagccttcccctgcctga
gagcacagcagtctcacagcacatgtagaccgaagctgcatcagttaagg
gccatttgataacgaaagcactacatgtccttcataaatgctgctgtgag
cacctgtcccagtcatccatgcctacctccatgtaaatgtgtacttaatt
gaagctcttaattgttcttatcactgataacttgcatctcatttgacgtc
caggttaatgtttttccaagc
gaattctagatgacagggaggtggcagctgtcaggtggatatggaagctt
tgaaagacttcaacaagagtgcatgatttcacagtagcaaattgacttga
ctagtgtaagttaatttctaggcactaaatggagacagcatccatccgtg
atttgtcacagcagaaaccttgctacagacatctctacccttcaatatgt
tgatttttctaagagcctcggagattcccactgagaataacctgtatcaa
tttcaacccatatctcattctgtggagggcacaacacagacaaactcttg
agcactgttacaactatgaactctcaagcggactctggaagactttcaaa
atgattgtctcatttttaacatgagtgtcatcaattttagaacccaggag
ctgctcacacacggcctgtaggctcaggtgattgtgtttcatggccattt
gtccgtttcctggttgacaacatcggcacatagggagtctctgcgtctac
tcagtaacagggtaaacagtaaacaaagtaaacagagcagaaggcagcct
gggattgttgaaaacactagccttcttctttgcccttccctacaaaggct
acttcagcagaaagctgaaatgacagagagtgacgtcaaacaccttcagt
cgggaaccaaaaccttctctcatgggaaataaaaggctcttgggaatttg
tcctcaaaaattaatgttttcctaatgaacaattttttaaagtacttttt
tttttcataaggagaattcaggttggattttcataaggagaattcacgga
tccctgaagaactcggtaaagaaacctaggttacaaagaacatcatagaa
ttatgttcactcccattgcatcaggggacccatggagaatacttaaatac
ctaaagcatttttcaaatgcatggtgaggctaatctgtaaaataaatata
tttcaaataagcttcttgatatgttgcatcgagagacattaaaattcctt
acaaaaatcaagtttcaaaaaacaacacatctctggataatatccagttc
taaactctgctctgtcacactatcttgttacaatgtgctcacaggtatac
atgataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72552063_72553241
seq2: B6Ng01-291D22.b_45_1215

seq1  GAATTCTCTTTCCTTACACAAGGGTGGCCTGATGCTTAAGCAGTAAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCTTACACAAGGGTGGCCTGATGCTTAAGCAGTAAGCTC  50

seq1  CTGTGTGATGGATCGAGTTCAAGCAAGCGCATACCTTATTAGCGGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATGGATCGAGTTCAAGCAAGCGCATACCTTATTAGCGGCCTCC  100

seq1  AAGGAGCTGATCAGACTCTGTAACTCCTCTTTACTCATCTCAACAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGATCAGACTCTGTAACTCCTCTTTACTCATCTCAACAGTGTA  150

seq1  CGGTTTCACTTTGTCATCTTCCTTCACATCCAGATGAAGGTTCAAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCACTTTGTCATCTTCCTTCACATCCAGATGAAGGTTCAAAAGGG  200

seq1  GCATCTGCAAGGTGGCAATCTTGTCACTAGAAAGCGCGAGCTGTGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCAAGGTGGCAATCTTGTCACTAGAAAGCGCGAGCTGTGGAAAG  250

seq1  GAGAGGAGAATAATGCACAGTATTACACAGCATGCTGACACCACTCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAATAATGCACAGTATTACACAGCATGCTGACACCACTCAACA  300

seq1  AATACCAGGGCTGGGGAAGAGCTCGCATCCCAGTGTTTCCCAGGATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGGGCTGGGGAAGAGCTCGCATCCCAGTGTTTCCCAGGATGCTC  350

seq1  ACAAATTCTGGGAAACAAGAGAATAAACTAACCCTGTGGCAGAACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGGGAAACAAGAGAATAAACTAACCCTGTGGCAGAACACACA  400

seq1  GTCAGAGAGCAGGAAGCGAGAGAAAAGGAGACAAAACACATACAGGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGCAGGAAGCGAGAGAAAAGGAGACAAAACACATACAGGAAGT  450

seq1  GGGCAGGAAGAAAGGAAACTGCGGTTTGTCCAGCTAAACAGAATACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGAAAGGAAACTGCGGTTTGTCCAGCTAAACAGAATACTTTT  500

seq1  AATTCTAGATTGAAATCATGGTTTACTATAGAAATGCAGAAGGACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGATTGAAATCATGGTTTACTATAGAAATGCAGAAGGACTAAAA  550

seq1  GTGTCCAATACATAAAGAATCAGAATTGTTATAGAAAAGATTCCAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATACATAAAGAATCAGAATTGTTATAGAAAAGATTCCAAGATG  600

seq1  ACAGTTCATGTAGAAGACAGTCTAAAGACACTCAGAAACTCTTACGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATGTAGAAGACAGTCTAAAGACACTCAGAAACTCTTACGAATT  650

seq1  AAGCAACTTACCTCATGACTGGCTACCAAAACTGTTGATGCTACCCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTACCTCATGACTGGCTACCAAAACTGTTGATGCTACCCAAAG  700

seq1  GGCGTCTAGTCTTCTTCTAACGTATCTACAGCATCTGCAATTGGCTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCTAGTCTTCTTCTAACGTATCTACAGCATCTGCAATTGGCTTGAC  750

seq1  CTTTCCCAGCTACAGAGCCTCCAGTGTTAAGAATCTTCATAAATCATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGCTACAGAGCCTCCAGTGTTAAGAATCTTCATAAATCATGAT  800

seq1  TCTAATTAAATTCCTGGTCATTCTTTCCTGGCGGGGGTCCTACTTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAAATTCCTGGTCATTCTTTCCTGGCGGGGGTCCTACTTGTTTA  850

seq1  GGTATTTAAGTTGGGCAATGAAAACTAAA-GGAATTAATAAGCTGATGCA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTATTTAAGTTGGGCAATGAAAACTAAAGGGAATTAATAAGCTGATGCA  900

seq1  AAAGCCTGCACACTTGAAAACAGCATCCACAGGAGCCTTCCCCTGCCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGCACACTTGAAAACAGCATCCACAGGAGCCTTCCCCTGCCTGA  950

seq1  GAGCACAGCAGTCTCACAGCACAATGTAAGACCGAAGCTGCATCAGTTAA  999
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  GAGCACAGCAGTCTCACAGCAC-ATGT-AGACCGAAGCTGCATCAGTTAA  998

seq1  GGGGCCATTTGATAAACGAAAGCAACTACATGTCCTTCATAAATGCTGCT  1049
       |||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  -GGGCCATTTGAT-AACGAAAGC-ACTACATGTCCTTCATAAATGCTGCT  1045

seq1  GTGAGCACCTGTCCCCAGTCATCCATGCTTACTTCAATGTTAAATGTGTA  1099
      |||||||||||| ||||||||||||||| ||| || ||| ||||||||||
seq2  GTGAGCACCTGT-CCCAGTCATCCATGCCTACCTCCATG-TAAATGTGTA  1093

seq1  CTTAAATGAAACCTCTTATTTAATC-TATCACTGATTAACTTGCCTTCTT  1148
      ||||| || || |||||| ||  || ||||||||| |||||||| |   |
seq2  CTTAATTG-AAGCTCTTAATTGTTCTTATCACTGA-TAACTTGCAT--CT  1139

seq1  CATTTGGACCTTCAGTGTAATGTTTT--CAAGC  1179
      ||||| ||| | |||  |||||||||  |||||
seq2  CATTT-GACGTCCAGGTTAATGTTTTTCCAAGC  1171

seq1: chr5_72688631_72689760
seq2: B6Ng01-291D22.g_66_1173 (reverse)

seq1  TCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAGGATAGTGTTTG  50
      ||||||| |||||||||||||||||| |||| |||||  |||||||  ||
seq2  TCTATCA-TGTATACCTGTGAGCACA-TTGT-AACAA--GATAGTG--TG  43

seq1  ACCAGAGCAGAGTTTAGGAACTGGAATATTTAATTCAGGAGAATGTGTTG  100
      | |||||||||||||| ||||||| |||||  || || ||| ||||||||
seq2  A-CAGAGCAGAGTTTA-GAACTGG-ATATT--ATCCA-GAG-ATGTGTTG  86

seq1  TTTTTTTGAAACTTTGATTTTTGTAAAGGAATTTTAATTGTCTTCTCGAT  150
       ||||||||||| ||||||||||| |||||||||||| |||| |||||||
seq2  -TTTTTTGAAAC-TTGATTTTTGT-AAGGAATTTTAA-TGTC-TCTCGAT  131

seq1  GCAAACATTATCAAAGAAGCTTATTTGAAATATATTTATTTTACAGATTA  200
      || |||| |||| |||||||||||||||||||||||||||||||||||||
seq2  GC-AACA-TATC-AAGAAGCTTATTTGAAATATATTTATTTTACAGATTA  178

seq1  GCCTCACCATGCATTTGAAAAATGCTTTAGGTATTTAAGTATTCTCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACCATGCATTTGAAAAATGCTTTAGGTATTTAAGTATTCTCCATG  228

seq1  GGTCCCCTGATGCAATGGGAGTGAACATAATTCTATGATGTTCTTTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTGATGCAATGGGAGTGAACATAATTCTATGATGTTCTTTGTAA  278

seq1  CCTAGGTTTCTTTACCGAGTTCTTCAGGGATCCGTGAATTCTCCTTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTTTCTTTACCGAGTTCTTCAGGGATCCGTGAATTCTCCTTATGA  328

seq1  AAATCCAACCTGAATTCTCCTTATGAAAAAAAAAAGTACTTTAAAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAACCTGAATTCTCCTTATGAAAAAAAAAAGTACTTTAAAAAATT  378

seq1  GTTCATTAGGAAAACATTAATTTTTGAGGACAAATTCCCAAGAGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGGAAAACATTAATTTTTGAGGACAAATTCCCAAGAGCCTTTT  428

seq1  ATTTCCCATGAGAGAAGGTTTTGGTTCCCGACTGAAGGTGTTTGACGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATGAGAGAAGGTTTTGGTTCCCGACTGAAGGTGTTTGACGTCA  478

seq1  CTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGGGCA  528

seq1  AAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCTTCTGCTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCTTCTGCTCTGTT  578

seq1  TACTTTGTTTACTGTTTACCCTGTTACTGAGTAGACGCAGAGACTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTTACTGTTTACCCTGTTACTGAGTAGACGCAGAGACTCCCTA  628

seq1  TGTGCCGATGTTGTCAACCAGGAAACGGACAAATGGCCATGAAACACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCGATGTTGTCAACCAGGAAACGGACAAATGGCCATGAAACACAAT  678

seq1  CACCTGAGCCTACAGGCCGTGTGTGAGCAGCTCCTGGGTTCTAAAATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCCTACAGGCCGTGTGTGAGCAGCTCCTGGGTTCTAAAATTGA  728

seq1  TGACACTCATGTTAAAAATGAGACAATCATTTTGAAAGTCTTCCAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCATGTTAAAAATGAGACAATCATTTTGAAAGTCTTCCAGAGTC  778

seq1  CGCTTGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGT  828

seq1  GCCCTCCACAGAATGAGATATGGGTTGAAATTGATACAGGTTATTCTCAG  900
      ||||||||||                  ||||||||||||||||||||||
seq2  GCCCTCCACANNNNNNNNNNNNNNNNNNAATTGATACAGGTTATTCTCAG  878

seq1  TGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGAT  928

seq1  GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCC  978

seq1  ATTTAGTGCCTAGAAATTAACTTACACTAGTCAAGTCAATTTGCTACTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGCCTAGAAATTAACTTACACTAGTCAAGTCAATTTGCTACTGT  1028

seq1  GAAATCATGCACTCTTGTTGAAGTCTTTCAAAGCTTCCATATCCACCTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGCACTCTTGTTGAAGTCTTTCAAAGCTTCCATATCCACCTGA  1078

seq1  CAGCTGCCACCTCCCTGTCATCTAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  CAGCTGCCACCTCCCTGTCATCTAGAATTC  1108