BAC Information

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BAC

Clone NameB6Ng01-291E21
Chromosome5 (Build37)
Map Location 58,562,889 - 58,563,976
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291E21.bB6Ng01-291E21.g
ACCGA088227GA088228
length1,2931,076
definitionB6Ng01-291E21.b B6Ng01-291E21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatagacatattagatttgaggagatttgaggaagaaattgttt
catctggtatgcattgacctttgtgaagcagatattatattcatgggaaa
ctcagaacagaattatctcccaggactagaaagatttatcaacagcaata
ctgaaagcgggtcctcagttacagtggcaaacatggtagcaagaggaagc
tagtgccatagaacaacaacagaaggctagaggtattcatactttgcagg
attggttgctagatgaaggtcaatatgttgtattaccaagtcagactgaa
tttgataatcatacctcagtgctgtgtcatagagcagctttcaatgcttg
cgacaagcttgaataatcagtatagagttacgagtcatttagtaaaatta
tacaagtgccccccctcaaaaaaaaaaaaaagaagccttcagtagtttgt
ttgtttgcttgtttgtttcaatagtacctgattcagaagtcagaaaaata
gtaatcaaatctttggcttttcaaaatgctaattcagaatggtgattaga
cctttagaggcaggatcagcaccaatatttgaatgaattagaaatactgc
ttatattggatctcacatttatgatcctactttgataagagaagtaagaa
aattcaaaatgtggaatgtgttaattatggtaagcaaggtcaattgaaat
ggcattctaggtaaggagttcctcgaaacaatgcttttcagagataatac
aaaaagaaggctccaagattctagattatgcagagggtgtggcaaaggcc
agtattgaactaatgaatgcagatcaacaaagggacaggcaaggtaaccg
tttgccattgggaaatgtcctaaaggaccaccaactggcccagatatcaa
atttaattcaatcgttctctgtcagcatcagtgaactcatccacaacgca
attaaaacatttatgcctgttgttaaaacaacactgctctgtaagtaact
gaggacagaacatcacagtggataaagcaaaactgcaggaagagaccaga
aaaacaagtatttaggcaaactgcttataaataatctatagactaaagct
aagttacaataattggcattggaaaccgggaggtttagttgacatgaagg
caagggtacatatttcattcccagtctggacatcctatataggctctctt
cagaggtaaatccgagatgagggagctggaacctttatgcgcgagatcac
acaacctagagagtggttccgcgctatatagaggacggggggc
gaattcaggtattctcaggacatattatgattatcacttatcccattggt
taaaattttcacgttctcataaatattttctaaaaactaaagtttttttt
tttttttttttttagctgggaaataccctgccaaggcaatagtatgtcaa
aagattacctttggtcttgaccactgacttttatatctcttagtaattaa
atatgtaggaagctaattcatttccagccattaattttcatttcaggtta
agtgctttgtctgtttgacttcatttcaaattatcaggacctgaacctag
acatccctggcaaaacataaaaaaactcaaaattccaggagtccaattaa
tctcttttctgacagaagtgaccatagagaaatgagaaaagaacatcttt
taaaaaacaacatctaaatcttccatgagatatggaagaacaaaacataa
aagtaaatttaaggttaggagctttgactattgtttttaggacagcattt
ctgtataactggtgtgccagatatttttaaagatgaccacttctatttat
tgttgtatattgatgtggaatgttcatcaggaaaatgaactttttttcca
ataaaaataactcagtaagtaaatgaaaccattattatttacattaaacc
aatgtatagcatcaataaaatgactcctaatgatattctgcttcctccag
caacaggtggcaacaaatgcaaagacccatgtggaggaatgagtcagcaa
atcaagattggcagctcacattgggccacacaatcacaacagtagcatct
gtgcctgttaacccctaagcctgcctgacaccctgagagacatatgatga
ctcacagagtgaccagaataaccaatcagatggtaccaactacatggaat
gagcatatgagccaagggagcccatgtgaagggtctaaaggtgtgcccaa
ttcccattaaagagctgctttgcgctaccagactctggagtctgtgttgt
tgatctgagctctcacctcacccctcagggtctctgtagtgccaacaccg
acctgcagccagaccttatgaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58562889_58563976
seq2: B6Ng01-291E21.g_65_1140

seq1  GAATTCAGGTATTCTCAGGACATATTATGATTATCACTTATCCCATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTATTCTCAGGACATATTATGATTATCACTTATCCCATTGGT  50

seq1  TAAAATTTTCACGTTCTCATAAATATTTTCTAAAAACTAAAGTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTCACGTTCTCATAAATATTTTCTAAAAACTAAAGTTTTTTTT  100

seq1  TTTTTTTTTTTTTAGCTGGGAAATACCCTGCCAAGGCAATAGTATGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAGCTGGGAAATACCCTGCCAAGGCAATAGTATGTCAA  150

seq1  AAGATTACCTTTGGTCTTGACCACTGACTTTTATATCTCTTAGTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACCTTTGGTCTTGACCACTGACTTTTATATCTCTTAGTAATTAA  200

seq1  ATATGTAGGAAGCTAATTCATTTCCAGCCATTAATTTTCATTTCAGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGGAAGCTAATTCATTTCCAGCCATTAATTTTCATTTCAGGTTA  250

seq1  AGTGCTTTGTCTGTTTGACTTCATTTCAAATTATCAGGACCTGAACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTGTCTGTTTGACTTCATTTCAAATTATCAGGACCTGAACCTAG  300

seq1  ACATCCCTGGCAAAACATAAAAAAACTCAAAATTCCAGGAGTCCAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTGGCAAAACATAAAAAAACTCAAAATTCCAGGAGTCCAATTAA  350

seq1  TCTCTTTTCTGACAGAAGTGACCATAGAGAAATGAGAAAAGAACATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTGACAGAAGTGACCATAGAGAAATGAGAAAAGAACATCTTT  400

seq1  TAAAAAACAACATCTAAATCTTCCATGAGATATGGAAGAACAAAACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAACATCTAAATCTTCCATGAGATATGGAAGAACAAAACATAA  450

seq1  AAGTAAATTTAAGGTTAGGAGCTTTGACTATTGTTTTTAGGACAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTTAAGGTTAGGAGCTTTGACTATTGTTTTTAGGACAGCATTT  500

seq1  CTGTATAACTGGTGTGCCAGATATTTTTAAAGATGACCACTTCTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAACTGGTGTGCCAGATATTTTTAAAGATGACCACTTCTATTTAT  550

seq1  TGTTGTATATTGATGTGGAATGTTCATCAGGAAAATGAACTTTTTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATATTGATGTGGAATGTTCATCAGGAAAATGAACTTTTTTTCCA  600

seq1  ATAAAAATAACTCAGTAAGTAAATGAAACCATTATTATTTACATTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAACTCAGTAAGTAAATGAAACCATTATTATTTACATTAAACC  650

seq1  AATGTATAGCATCAATAAAATGACTCCTAATGATATTCTGCTTCCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAGCATCAATAAAATGACTCCTAATGATATTCTGCTTCCTCCAG  700

seq1  CAACAGGTGGCAACAAATGCAAAGACCCATGTGGAGGAATGAGTCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTGGCAACAAATGCAAAGACCCATGTGGAGGAATGAGTCAGCAA  750

seq1  ATCAAGATTGGCAGCTCACATTGGGCCACACAATCACAACAGTAGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATTGGCAGCTCACATTGGGCCACACAATCACAACAGTAGCATCT  800

seq1  GTGCCTGTTAACCCCTAAGCCTGCCTGACACCCTGAGAGACATATGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTTAACCCCTAAGCCTGCCTGACACCCTGAGAGACATATGATGA  850

seq1  CTCACAGAGTGACCAGAATAACCAATCAGATGGTACCAACTACATGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGTGACCAGAATAACCAATCAGATGGTACCAACTACATGGAAT  900

seq1  GAGCATAATGAGCCAAGGGAGCCCATGTGAAGGGTCTAAAGGTGTGCCCA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAT-ATGAGCCAAGGGAGCCCATGTGAAGGGTCTAAAGGTGTGCCCA  949

seq1  ATTCCCATTAAAAGAGCTTGCTTTTGCCGCTTACCAGACTCCTGGAGTCT  1000
      ||||||||| ||||||| ||||||   ||| ||||||||| |||||||||
seq2  ATTCCCATT-AAAGAGC-TGCTTT--GCGC-TACCAGACT-CTGGAGTCT  993

seq1  GTGTTGTTGATTCTGAGCCTTCTCACCTCACCCCTCAAGGGTCTCTGTAG  1050
      |||||||||| |||||||  |||||||||||||||| |||||||||||||
seq2  GTGTTGTTGA-TCTGAGC--TCTCACCTCACCCCTC-AGGGTCTCTGTAG  1039

seq1  GTTGCAAACAACGGACCTGCAGCCAGACATTAT--ATGAA  1088
        ||| ||| || ||||||||||||||| ||||  |||||
seq2  --TGCCAAC-ACCGACCTGCAGCCAGACCTTATGAATGAA  1076