BAC Information

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BAC

Clone NameB6Ng01-291H14
Chromosome5 (Build37)
Map Location 54,586,640 - 54,744,254
singlet/doubletdoublet
Overlap genenone
Upstream gene2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291H14.bB6Ng01-291H14.g
ACCGA088347GA088348
length1,137861
definitionB6Ng01-291H14.b B6Ng01-291H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,743,106 - 54,744,254)(54,586,640 - 54,587,500)
sequence
gaattcttagtagaggctgttcttcagaatcacaggacagggcctcctct
tcatgaaataacgaaataaagagatttctacatgacacaggacaaatatt
tttgttgttgttttttgtttgtttggttttttgttgttgttttgttttta
gagacagggtttctctgtgtagcccgggctgtcctggacctcactctgta
gaccaggctggccttgaactcagaaacccacctgcctctgcctcccaagt
gctgaggttaaaggcatgcgccaccacgcccagccttgttgattctatgc
caaccagtgagggacaattagaaattttagctgtgatcagaaataacctt
taggaaaaataaaagagacaccaagaaaccgaaaccgtcaactggtatta
aattatgtattgccttctttctagtcactaccccccctccccccattcag
ttaaccactctacttaccaccattgctggatcattgatccttttgttgtg
aaccttcattataaagcaggcttgcacaactgcccacaggactatgtaaa
atagagagtaacttctgttaaattctggtgctgaagggacaatatactct
accccagaatgagtccactatttaacccatgctcattagaagcagtgagg
aatgtatccaatctccagtccttaacgcaactgatgctgtgttaaagatg
tcgttctgaccttaaaacccagcacacaggacacaaaacctgccaaaatg
gaagcaaagaccaagaccacagtgcaagaaaactcctcatgtaaaaagtc
cttaaatgtactaactttgcctcttggcttctgtggctccatttcttcct
aaacgaggtgtgctagccaggatatgctttctgttcataaaagaccaaga
gctataaagctcagggttacatgatttggacaaagtccatgtgctgccag
cagctggcaataaagactttcttttttgactttgcaagtgtccatgtggt
ggtctctggtgactttacctcatacagttcaaataactatcttgtttctc
aaagtatgaaaatacatctgcagggatcagcgttatggttgactttctaa
tctagactattatagaattacctacctccaaggcttt

gaattctttatgattccatttaagaccaagggaaccaatgaactcccccc
ccatttacatttcagtggagtctcataagtaatgcatgtgtgcatgctgc
ttgccttccccactgtcgctgggacagcctttaatacctcatcacatgca
cgaccttttccagaggcagaggatagaggagtgttctcctcagactgctg
actttttcttgcttctaccacttgaaacttcctcagtggccaaggacagg
caatccagaggagccatctctgggatgctttctcttgtccttcccttagg
gaacctttctggtctgtgactctgccaccacccctgagcaaggcctggaa
agtgagctagccagctggccgtagcctgaatttctgatgaccattatgct
gggtaactgacgctttctttccaatctggctttccctaggtgagatccat
aggccagtcctggtgtgggtgtcttcacatcttcatatctgtgcagtgcc
atcgttacttgatataagtcggagcaggccacccctgtttagaatcctcc
actcttttgacttctacacacacacacacacacacacacacacaccaagc
tacacgaacatgttcctcgtgacatcgtttcagctagccactccagccta
gataacacctgcaagagagcaggagctccagacctgagagcacaaacctc
aaggtgaggtgtcatgtgacttttccagagcaaccaggaatggtgtctgt
tcacatcaagttgggcatcaacaatacatcaaagaatggtttcacttacg
cctatctagtagactgctatatttcttagggttggttatggagtgcgggg
gtgagggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54743106_54744254
seq2: B6Ng01-291H14.b_51_1187 (reverse)

seq1  AAAGCCCTGTGAGGTAGTTATATTCTATAATAGTCTTAAGATTTAGAAAG  50
      |||||| || ||||||| || |||||||||||||||  ||| ||||||||
seq2  AAAGCCTTG-GAGGTAGGTA-ATTCTATAATAGTCT--AGA-TTAGAAAG  45

seq1  TCAACCCATAACGCCTGGATTCCCTGCAAGAATTGTATTTCAATACTTGG  100
      |||| |||||||| |||   ||||||| |||  |||||||  |||||| |
seq2  TCAA-CCATAACG-CTG--ATCCCTGC-AGA--TGTATTTTCATACTTTG  88

seq1  AGAAACAAGATAGTATTTTGAAACTGTTATGAGGTAAAGTCACCAGAGAC  150
      ||||||||||||||  |||| ||||| |||||||||||||||||||||||
seq2  AGAAACAAGATAGTTATTTG-AACTG-TATGAGGTAAAGTCACCAGAGAC  136

seq1  CACCACATGGACACTTGCAAAGTC-AAAAAGAAAGTCTTTATTGCCAGCT  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACCACATGGACACTTGCAAAGTCAAAAAAGAAAGTCTTTATTGCCAGCT  186

seq1  GCTGGCAGCACATGGACTTTGTCCAAATCATGTAACCCTGAGCTTTATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGCACATGGACTTTGTCCAAATCATGTAACCCTGAGCTTTATAG  236

seq1  CTCTTGGTCTTTTATGAACAGAAAGCATATCCTGGCTAGCACACCTCG-T  298
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTTGGTCTTTTATGAACAGAAAGCATATCCTGGCTAGCACACCTCGTT  286

seq1  TAGGAAGAAATGGAGCCACAGAAGCCAAGAGGCAAAGTTAGTACATTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAATGGAGCCACAGAAGCCAAGAGGCAAAGTTAGTACATTTAA  336

seq1  GGACTTTTTACATGAGGAGTTTTCTTGCACTGTGGTCTTGGTCTTTGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTTACATGAGGAGTTTTCTTGCACTGTGGTCTTGGTCTTTGCTT  386

seq1  CCATTTTGGCAGGTTTTGTGTCCTGTGTGCTGGGTTTTAAGGTCAGAACG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGGCAGGTTTTGTGTCCTGTGTGCTGGGTTTTAAGGTCAGAACG  436

seq1  ACATCTTTAACACAGCATCAGTTGCGTTAAGGACTGGAGATTGGATACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAACACAGCATCAGTTGCGTTAAGGACTGGAGATTGGATACAT  486

seq1  TCCTCACTGCTTCTAATGAGCATGGGTTAAATAGTGGACTCATTCTGGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGCTTCTAATGAGCATGGGTTAAATAGTGGACTCATTCTGGGG  536

seq1  TAGAGTATATTGTCCCTTCAGCACCAGAATTTAACAGAAGTTACTCTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATATTGTCCCTTCAGCACCAGAATTTAACAGAAGTTACTCTCTA  586

seq1  TTTTACATAGTCCTGTGGGCAGTTGTGCAAGCCTGCTTTATAATGAAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATAGTCCTGTGGGCAGTTGTGCAAGCCTGCTTTATAATGAAGGT  636

seq1  TCACAACAAAAGGATCAATGATCCAGCAATGGTGGTAAGTAGAGTGGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAAAAGGATCAATGATCCAGCAATGGTGGTAAGTAGAGTGGTTA  686

seq1  ACTGAATGGGGGGAGGGGGGGTAGTGACTAGAAAGAAGGCAATACATAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGGGGGAGGGGGGGTAGTGACTAGAAAGAAGGCAATACATAAT  736

seq1  TTAATACCAGTTGACGGTTTCGGTTTCTTGGTGTCTCTTTTATTTTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCAGTTGACGGTTTCGGTTTCTTGGTGTCTCTTTTATTTTTCCT  786

seq1  AAAGGTTATTTCTGATCACAGCTAAAATTTCTAATTGTCCCTCACTGGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTATTTCTGATCACAGCTAAAATTTCTAATTGTCCCTCACTGGTT  836

seq1  GGCATAGAATCAACAAGGCTGGGCGTGGTGGCGCATGCCTTTAACCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGAATCAACAAGGCTGGGCGTGGTGGCGCATGCCTTTAACCTCAG  886

seq1  CACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTTCAAGGCCAGCCTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAGTTCAAGGCCAGCCTGGT  936

seq1  CTACAGAGTGAGGTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGGTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCT  986

seq1  CTAAAAACAAAACAACAACAAAAAACCAAACAAACAAAAAACAACAACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAAAACAACAACAAAAAACCAAACAAACAAAAAACAACAACAA  1036

seq1  AAATATTTGTCCTGTGTCATGTAGAAATCTCTTTATTTCGTTATTTCATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTCCTGTGTCATGTAGAAATCTCTTTATTTCGTTATTTCATG  1086

seq1  AAGAGGAGGCCCTGTCCTGTGATTCTGAAGAACAGCCTCTACTAAGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGCCCTGTCCTGTGATTCTGAAGAACAGCCTCTACTAAGAATT  1136

seq1  C  1149
      |
seq2  C  1137


seq1: chr5_54586640_54587500
seq2: B6Ng01-291H14.g_69_929

seq1  GAATTCTTTATGATTCCATTTAAGACCAAGGGAACCAATGAACTCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGATTCCATTTAAGACCAAGGGAACCAATGAACTCCCCCC  50

seq1  CCATTTACATTTCAGTGGAGTCTCATAAGTAATGCATGTGTGCATGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACATTTCAGTGGAGTCTCATAAGTAATGCATGTGTGCATGCTGC  100

seq1  TTGCCTTCCCCACTGTCGCTGGGACAGCCTTTAATACCTCATCACATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCCCCACTGTCGCTGGGACAGCCTTTAATACCTCATCACATGCA  150

seq1  CGACCTTTTCCAGAGGCAGAGGATAGAGGAGTGTTCTCCTCAGACTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTTTCCAGAGGCAGAGGATAGAGGAGTGTTCTCCTCAGACTGCTG  200

seq1  ACTTTTTCTTGCTTCTACCACTTGAAACTTCCTCAGTGGCCAAGGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTGCTTCTACCACTTGAAACTTCCTCAGTGGCCAAGGACAGG  250

seq1  CAATCCAGAGGAGCCATCTCTGGGATGCTTTCTCTTGTCCTTCCCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGAGGAGCCATCTCTGGGATGCTTTCTCTTGTCCTTCCCTTAGG  300

seq1  GAACCTTTCTGGTCTGTGACTCTGCCACCACCCCTGAGCAAGGCCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTCTGGTCTGTGACTCTGCCACCACCCCTGAGCAAGGCCTGGAA  350

seq1  AGTGAGCTAGCCAGCTGGCCGTAGCCTGAATTTCTGATGACCATTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTAGCCAGCTGGCCGTAGCCTGAATTTCTGATGACCATTATGCT  400

seq1  GGGTAACTGACGCTTTCTTTCCAATCTGGCTTTCCCTAGGTGAGATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACTGACGCTTTCTTTCCAATCTGGCTTTCCCTAGGTGAGATCCAT  450

seq1  AGGCCAGTCCTGGTGTGGGTGTCTTCACATCTTCATATCTGTGCAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTCCTGGTGTGGGTGTCTTCACATCTTCATATCTGTGCAGTGCC  500

seq1  ATCGTTACTTGATATAAGTCGGAGCAGGCCACCCCTGTTTAGAATCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTACTTGATATAAGTCGGAGCAGGCCACCCCTGTTTAGAATCCTCC  550

seq1  ACTCTTTTGACTTCTACACACACACACACACACACACACACACACCAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGACTTCTACACACACACACACACACACACACACACACCAAGC  600

seq1  TACACGAACATGTTCCTCGTGACATCGTTTCAGCTAGCCACTCCAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGAACATGTTCCTCGTGACATCGTTTCAGCTAGCCACTCCAGCCTA  650

seq1  GATAACACCTGCAAGAGAGCAGGAGCTCCAGACCTGAGAGCACAAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACCTGCAAGAGAGCAGGAGCTCCAGACCTGAGAGCACAAACCTC  700

seq1  AAGGTGAGGTGTCATGTGACTTTTCCAGAGCAACCAGGAATGGTGTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGGTGTCATGTGACTTTTCCAGAGCAACCAGGAATGGTGTCTGT  750

seq1  TCACATCAAGTTGGGCATCAACAATACATCAAAGAATGGTTTCACTTACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCAAGTTGGGCATCAACAATACATCAAAGAATGGTTTCACTTACG  800

seq1  CCTATCTAGTAGACTGCTATATTTCTTAGGGTTGGTTATGGAGTGCGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTAGTAGACTGCTATATTTCTTAGGGTTGGTTATGGAGTGCGGGG  850

seq1  GTGAGGGTGGG  861
      |||||||||||
seq2  GTGAGGGTGGG  861


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