BAC Information

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BAC

Clone NameB6Ng01-291H19
Chromosome5 (Build37)
Map Location 17,025,231 - 17,167,904
singlet/doubletdoublet
Overlap geneSema3c
Upstream geneHgf, EG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291H19.bB6Ng01-291H19.g
ACCGA088357GA088358
length1,1111,172
definitionB6Ng01-291H19.b B6Ng01-291H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,166,808 - 17,167,904)(17,025,231 - 17,026,419)
sequence
gaattcactgatatggataaactggccagacagtttattctgaaaaattt
acggtcaccatctgagcactggaataacaggtgactctgctaccaagtcc
acccagcatatcatttacaagggttctctggacttgaacccaggtcttca
cacttgctgcttgcatgctaaatgctttaacagctcatctgtcaactaag
ctgaacctatgttgggttttatgctgaacagttttacaagctcattcttt
tatatgatcaaattcagaaatgcaggtgtacaacatccagtcagcaaggt
gaatcaacaggaaagtttatttttaccaagcctgaagccctgagtttcat
ccccagaaaatacagtgtaaaaaaagaaaaaagaaaaatgaaaaaataaa
aacagaaaaaagaaaaaacctttgaaaatacattctcagacttccacttg
tgtttgtacttacagaaatcatacacaactagatagatagatagatagat
agatagatagatagatagatagatgcaaaagggtaatgcagacatacacc
tagcactcacacacacacacacacacacacacacacacacacacacacac
acacgtgcatgcacaatgtataaacatgtttgaagtggagttgtgctcat
tcgtattccgtattatcatgagttcaccatggtaaccatggccacctttt
ctagttaatacatgaaagtcatcttagaattcatgcatagctgcagctct
ctatgaaggatggtggaatcattctgtctatccagtgtccccactaaata
agcttttaatttcatgtttctcacttggttccagtttaagtgggcaaggg
tgtcattgctgtacttctaaattatctgtgacctttcaggagtctgtaag
ttctccatgggccaaattaatcacttcaaactccacagatgataagctca
ttactttttgctgattataaattaattcaagcctgaaacagaatgataat
tcccctcttacaaagtcatttttctctcaggaaacattattgaaaaatta
cttttatcatctgaaggtgagtaatgtgtaataaaagctaataaatgtat
tcaatttaatg

gaattcaagtcaatgaacctaaccaagaatgatttttctactcataaatg
agaatttttcttgagtgggcattatgtgttttttagtcagagatgtgggc
acgaatcttctttctggtaaaaattcttagtaagggaattttatttaaac
tagaaaagaacaactgaacaaccaaataaaacaaaatcaagcaaaattaa
ttattatgaggatcaacaaaggaaacaagactagaccttctcagcaatag
tctattcactccatcgatactccatctcattttcaagtgatcattaactt
ttaaatttcaaggactcagcctgtagaaacaaaccaccacaaccatcaac
atcaacataaccctgaagcaaaggaagaaacaaacagagaaatcccttct
agtcaagtatctttgaaagtcactatttcctatttgatgtttcactttta
caccaagttagaagcaaaagatgaagccatttgttttatcgctggcacag
tcaaaggtgaaatctttgcatacttcttgaattatctctcttgttttgct
ctacttggcatctaatttctgtccttgcattaggaaataaagcaattgga
gatttttattgcacacacgtagttacttgagcactagtctctttccaatg
gatttcacttaccaccagtgagagctcatttcaaataaccacactggatc
tcatatgaattgcaaagttccgtcctagtgagtttttgaagataaagaag
aaaagagtaactgatgtggcaggcacattttctcatggatgttggacacc
catgtttattcattatcctttatggctccttaaagctcttcaggagaaaa
acaactcaagcactccatgtcagcaatacaaagcgatgacaaagtcagac
atcaggcattttaaagccctcatattaaaaattcctttcctgggtgagtg
gaggtcatgggccctgctttgctttccagatcctccagagctttcgaagc
caatgtaaatgtaaaatccagaaactgtgtatcagtaaaagaggtctaaa
aactgtcaaataagcatgatgtgtaagaacatgcttaagcctgccaatat
agtcatgttaacacctagcatagtacagtaattaatgcctgtgctatttc
ttcctcagaacacccactttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17166808_17167904
seq2: B6Ng01-291H19.b_47_1157 (reverse)

seq1  CATTAAATTTGATACATTTA-TAGCTTTTATTACACAATACTCACC-TCA  48
      |||||||||  ||||||||| |||||||||||||||| |||||||| |||
seq2  CATTAAATTGAATACATTTATTAGCTTTTATTACACATTACTCACCTTCA  50

seq1  GATGATAAAAGTA--TTTTCAATAATGTTCCTGGAGAGAAAAATGACTTT  96
      |||||||||||||  |||||||||||||| |  |||||||||||||||||
seq2  GATGATAAAAGTAATTTTTCAATAATGTTTCCTGAGAGAAAAATGACTTT  100

seq1  GT-AGAGGG--AATATCATTCTGTTTCAGGCTTG-ATTAATTTATAATCA  142
      || ||||||  | ||||||||||||||||||||| |||||||||||||||
seq2  GTAAGAGGGGAATTATCATTCTGTTTCAGGCTTGAATTAATTTATAATCA  150

seq1  GC-AAAAGTAATGAGCTTATCATCTGTGGAGTTTGGAGTGATTAATTTGG  191
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAAAAAGTAATGAGCTTATCATCTGTGGAGTTTGAAGTGATTAATTTGG  200

seq1  -CCATGGAGAACTTACAGACTCCTGAAAGGTCACAGATAATTTAGAAGTA  240
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGAACTTACAGACTCCTGAAAGGTCACAGATAATTTAGAAGTA  250

seq1  CAGCAATGACACCCTTGCCCACTTAAACTGGAACCAAGTGAGAAACATGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGACACCCTTGCCCACTTAAACTGGAACCAAGTGAGAAACATGA  300

seq1  AATTAAAAGCTTATTTAGTGGGGACACTGGATAGACAGAATGATTCCACC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGCTTATTTAGTGGGGACACTGGATAGACAGAATGATTCCACC  350

seq1  ATCCTTCATAGAGAGCTGCAGCTATGCATGAATTCTAAGATGACTTTCAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCATAGAGAGCTGCAGCTATGCATGAATTCTAAGATGACTTTCAT  400

seq1  GTATTAACTAGAAAAGGTGGCCATGGTTACCATGGTGAACTCATGATAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACTAGAAAAGGTGGCCATGGTTACCATGGTGAACTCATGATAAT  450

seq1  ACGGAATACGAATGAGCACAACTCCACTTCAAACATGTTTATACATTGTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAATACGAATGAGCACAACTCCACTTCAAACATGTTTATACATTGTG  500

seq1  CATGCAC----GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  536
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  CATGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  550

seq1  TGTGAGTGCTAGGTGTATGTCTGCATTACCCTTTTGCATCTATCTATCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGCTAGGTGTATGTCTGCATTACCCTTTTGCATCTATCTATCTA  600

seq1  TCTATCTATCTATCTATCTATCTATCTATCTAGTTGTGTATGATTTCTGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTAGTTGTGTATGATTTCTGT  650

seq1  AAGTACAAACACAAGTGGAAGTCTGAGAATGTATTTTCAAAGGTTTTTTC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAACACAAGTGGAAGTCTGAGAATGTATTTTCAAAGGTTTTTTC  700

seq1  TTTTTTCTGTTTTTATTTTTTCATTTTTCTTTTTTCTTTTTTTACACTGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGTTTTTATTTTTTCATTTTTCTTTTTTCTTTTTTTACACTGT  750

seq1  ATTTTCTGGGGATGAAACTCAGGGCTTCAGGCTTGGTAAAAATAAACTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGGGGATGAAACTCAGGGCTTCAGGCTTGGTAAAAATAAACTTT  800

seq1  CCTGTTGATTCACCTTGCTGACTGGATGTTGTACACCTGCATTTCTGAAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGATTCACCTTGCTGACTGGATGTTGTACACCTGCATTTCTGAAT  850

seq1  TTGATCATATAAAAGAATGAGCTTGTAAAACTGTTCAGCATAAAACCCAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATATAAAAGAATGAGCTTGTAAAACTGTTCAGCATAAAACCCAA  900

seq1  CATAGGTTCAGCTTAGTTGACAGATGAGCTGTTAAAGCATTTAGCATGCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTCAGCTTAGTTGACAGATGAGCTGTTAAAGCATTTAGCATGCA  950

seq1  AGCAGCAAGTGTGAAGACCTGGGTTCAAGTCCAGAGAACCCTTGTAAATG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGTGTGAAGACCTGGGTTCAAGTCCAGAGAACCCTTGTAAATG  1000

seq1  ATATGCTGGGTGGACTTGGTAGCAGAGTCACCTGTTATTCCAGTGCTCAG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGGGTGGACTTGGTAGCAGAGTCACCTGTTATTCCAGTGCTCAG  1050

seq1  ATGGTGACCGTAAATTTTTCAGAATAAACTGTCTGGCCAGTTTATCCATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACCGTAAATTTTTCAGAATAAACTGTCTGGCCAGTTTATCCATA  1100

seq1  TCAGTGAATTC  1097
      |||||||||||
seq2  TCAGTGAATTC  1111


seq1: chr5_17025231_17026419
seq2: B6Ng01-291H19.g_67_1238

seq1  GAATTCAAGTCAATGAACCCAACCAAGAATGATTTTTCTACTCATAAATG  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAATGAACCTAACCAAGAATGATTTTTCTACTCATAAATG  50

seq1  AGAATTTTTCTTGAGTGGGCATTATGTGTTTTTTAGTCAGAGATGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTCTTGAGTGGGCATTATGTGTTTTTTAGTCAGAGATGTGGGC  100

seq1  ACGAATCTTCTTTCTGGTAAAAATTCTTAGTAAGGGAATTTTATTTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATCTTCTTTCTGGTAAAAATTCTTAGTAAGGGAATTTTATTTAAAC  150

seq1  TAGAAAAGAACAACTGAACAACCAAATAAAACAAAATCAAGCAAAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAACAACTGAACAACCAAATAAAACAAAATCAAGCAAAATTAA  200

seq1  TTATTATGAGGATCAACAAAGGAAACAAGACTAGACCTTCTCAGCAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGAGGATCAACAAAGGAAACAAGACTAGACCTTCTCAGCAATAG  250

seq1  TCTATTCACTCCATCGATACTCCATCTCATTTTCAAGTGATCATTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACTCCATCGATACTCCATCTCATTTTCAAGTGATCATTAACTT  300

seq1  TTAAATTTCAAGGACTCAGCCTGTAGAAACAAACCACCACAACCATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCAAGGACTCAGCCTGTAGAAACAAACCACCACAACCATCAAC  350

seq1  ATCAACATAACCCTGAAGCAAAGGAAGAAACAAACAGAGAAATCCCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACATAACCCTGAAGCAAAGGAAGAAACAAACAGAGAAATCCCTTCT  400

seq1  AGTCAAGTATCTTTGAAAGTCACTATTTCCTATTTGATGTTTCACTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTATCTTTGAAAGTCACTATTTCCTATTTGATGTTTCACTTTTA  450

seq1  CACCAAGTTAGAAGCAAAAGATGAAGCCATTTGTTTTATCGCTGGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTTAGAAGCAAAAGATGAAGCCATTTGTTTTATCGCTGGCACAG  500

seq1  TCAAAGGTGAAATCTTTGCATACTTCTTGAATTATCTCTCTTGTTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTGAAATCTTTGCATACTTCTTGAATTATCTCTCTTGTTTTGCT  550

seq1  CTACTTGGCATCTAATTTCTGTCCTTGCATTAGGAAATAAAGCAATTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGCATCTAATTTCTGTCCTTGCATTAGGAAATAAAGCAATTGGA  600

seq1  GATTTTTATTGCACACACGTAGTTACTTGAGCACTAGTCTCTTTCCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTGCACACACGTAGTTACTTGAGCACTAGTCTCTTTCCAATG  650

seq1  GATTTCACTTACCACCAGTGAGAGCTCATTTCAAATAACCACACTGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACTTACCACCAGTGAGAGCTCATTTCAAATAACCACACTGGATC  700

seq1  TCATATGAATTGCAAAGTTCCGTCCTAGTGAGTTTTTGAAGATAAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAATTGCAAAGTTCCGTCCTAGTGAGTTTTTGAAGATAAAGAAG  750

seq1  AAAAGAGTAACTGATGTGGCAGGCACATTTTCTCATGGATGTTGGACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTAACTGATGTGGCAGGCACATTTTCTCATGGATGTTGGACACC  800

seq1  CATGTTTATTCATTATCCTTTATGGCTCCTTAAAGCTCTTCAGGAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATTCATTATCCTTTATGGCTCCTTAAAGCTCTTCAGGAGAAAA  850

seq1  ACAACTCAAGCACTCCATGTCAGCAATACAAAGCGATGACAAAGTCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAGCACTCCATGTCAGCAATACAAAGCGATGACAAAGTCAGAC  900

seq1  ATCAGGCATTTTAAAGCCCTCATATTAAAAATTCCTTTCCTGGGTGAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCAGGCATTTTAAAGCCCTCATATTAAAAATTCCTTTCCTGGGTGA-GT  949

seq1  GGAGGTCAT-GGCCCTGCTTTGCTTTCCAGATCCTCCAGAGCTTTCGAAG  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATGGGCCCTGCTTTGCTTTCCAGATCCTCCAGAGCTTTCGAAG  999

seq1  CCAATGTAAATGGAAAAATCCAGAAACTGTGTTATCCAGTAAAAAGGAAG  1049
      ||||||||||| | ||||||||||||||||| ||| ||||||||  || |
seq2  CCAATGTAAAT-GTAAAATCCAGAAACTGTG-TAT-CAGTAAAA--GAGG  1044

seq1  TCTAAAAAACTGTCAAATAAGCAATGATGTGTAAAGAAACATGCTTTAAG  1099
      ||| |||||||||||||||||| |||||||||||   ||||||||| |  
seq2  TCT-AAAAACTGTCAAATAAGC-ATGATGTGTAA--GAACATGCTTAAGC  1090

seq1  CTGCAAATTATAGTCATGTTAACA-CTAGCAAATAAGTACAGTAAATTAA  1148
      |||| || |||||||||||||||| ||||||    ||||||||||  | |
seq2  CTGCCAA-TATAGTCATGTTAACACCTAGCA---TAGTACAGTAA--TTA  1134

seq1  ATGCCCTGTGCTAATTTTCTTTCTCAGAACACCAACTTTGT  1189
      ||| |||||||||  |||||| ||||||||||| |||||||
seq2  ATG-CCTGTGCTA--TTTCTTCCTCAGAACACCCACTTTGT  1172


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