BAC Information

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BAC

Clone NameB6Ng01-291N11
Chromosome5 (Build37)
Map Location 73,021,460 - 73,166,720
singlet/doubletdoublet
Overlap geneCnga1, Npal1, Txk, Tec
Upstream geneGabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, LOC384275
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291N11.bB6Ng01-291N11.g
ACCGA088626GA088627
length390953
definitionB6Ng01-291N11.b B6Ng01-291N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,021,460 - 73,021,855)(73,166,086 - 73,166,720)
sequence
tgctgtggatgactcagaggccacacagacataactggcgaaggcagcat
tcatctccagagagcacacttggaaatagtggaagcaacacagaggaaca
aaagcatcgtgcccatacagaagtgggtcagtccagagacgtgataagag
ccaagaagagatccgctcactcctcttcggggaacctgagtccctgaaag
gacaaaatctggggcattctcagacaaaaccttgaacactgatccaaaca
ggattctaggtatgagccttagtaggtacaaaaacaattatatatgaaaa
taaaacaatattcattcagaaaccacaacaggtacacacaaataatagaa
agtagtgtatggtatatgggaggagagagagagagggaaa
gaattctcttgtctaaggtgtctgaggccaaaagccagaagcctgttgtg
tgaattttgcgagaagaagcaacacacacacacacacacacacacacaca
cacacacacacacacacacccctactgaactcacaacagaccaaaatcca
acttggcgaaccagtgagttttattggtatcacttatgggaatatgggtg
aggggtcactcataggaacagatatgactccaagatagatacaccaccaa
agcccacctcagcatgggagcctagaacacactgcacagcctgcaggcag
ctccacagactgaagagcgttcttcccaagtgactcctctgatccaaacc
tctttcagacagcttggtgagtttcagcttcttcttggtgacctgatagt
ctttcattcatcttgtcttgcctgtgagtgactctcagcaatcttttact
gtttattcctagagagggagtagatcagcaaatctggtcagtttcaggga
cttcctggagcttttttttttttttttttacttctttaccttctgtgtta
tggagcttccttcaggatggaatgtttcaatcccagagaaagtgctaccc
aacaggatctttaatgactaggctgggacaatagtgggaaattcagatga
ccaaagaggccccagtgactttaggacttttgaggtttttaggaatttga
ctgtgatggaggatttattgccaactcaaaacatctatcaaaacaaactt
aaagttgaaagtcctgagaaaatgatctttagtcatactctttggggtcc
atttgctttatagtcacacggaggcatgattctggggggagctgaagggt
agactgtctctaggataaagaaggggattgcagtactcacagagtcttct
caaaggctcagtgactcagggtatgggcccaggtggggaaagagggcatg
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73021460_73021855
seq2: B6Ng01-291N11.b_49_444

seq1  GAATTCTGCTGTGGATGACTCAGAGGCCACACAGACATAACTGGCGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGTGGATGACTCAGAGGCCACACAGACATAACTGGCGAAGG  50

seq1  CAGCATTCATCTCCAGAGAGCACACTTGGAAATAGTGGAAGCAACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCATCTCCAGAGAGCACACTTGGAAATAGTGGAAGCAACACAGA  100

seq1  GGAACAAAAGCATCGTGCCCATACAGAAGTGGGTCAGTCCAGAGACGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAGCATCGTGCCCATACAGAAGTGGGTCAGTCCAGAGACGTGA  150

seq1  TAAGAGCCAAGAAGAGATCCGCTCACTCCTCTTCGGGGAACCTGAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCAAGAAGAGATCCGCTCACTCCTCTTCGGGGAACCTGAGTCCC  200

seq1  TGAAAGGACAAAATCTGGGGCATTCTCAGACAAAACCTTGAACACTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGACAAAATCTGGGGCATTCTCAGACAAAACCTTGAACACTGATC  250

seq1  CAAACAGGATTCTAGGTATGAGCCTTAGTAGGTACAAAAACAATTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGATTCTAGGTATGAGCCTTAGTAGGTACAAAAACAATTATATA  300

seq1  TGAAAATAAAACAATATTCATTCAGAAACCACAACAGGTACACACAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAAACAATATTCATTCAGAAACCACAACAGGTACACACAAATA  350

seq1  ATAGAAAGTAGTGTATGGTATATGGGAGGAGAGAGAGAGAGGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTAGTGTATGGTATATGGGAGGAGAGAGAGAGAGGGAAA  396

seq1: chr5_73166086_73166720
seq2: B6Ng01-291N11.g_72_706 (reverse)

seq1  ACTATTGTCCCAGCCTAGTCATTAAAGATCCTGTTGGGTAGCACTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTCCCAGCCTAGTCATTAAAGATCCTGTTGGGTAGCACTTTCTC  50

seq1  TGGGATTGAAACATTCCATCCTGAAGGAAGCTCCATAACACAGAAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGAAACATTCCATCCTGAAGGAAGCTCCATAACACAGAAGGTAA  100

seq1  AGAAGTAAAAAAAAAAAAAAAAAAGCTCCAGGAAGTCCCTGAAACTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAAAAAAAAAAAAAAAAGCTCCAGGAAGTCCCTGAAACTGACC  150

seq1  AGATTTGCTGATCTACTCCCTCTCTAGGAATAAACAGTAAAAGATTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCTGATCTACTCCCTCTCTAGGAATAAACAGTAAAAGATTGCTG  200

seq1  AGAGTCACTCACAGGCAAGACAAGATGAATGAAAGACTATCAGGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTCACAGGCAAGACAAGATGAATGAAAGACTATCAGGTCACCA  250

seq1  AGAAGAAGCTGAAACTCACCAAGCTGTCTGAAAGAGGTTTGGATCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGCTGAAACTCACCAAGCTGTCTGAAAGAGGTTTGGATCAGAGG  300

seq1  AGTCACTTGGGAAGAACGCTCTTCAGTCTGTGGAGCTGCCTGCAGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTGGGAAGAACGCTCTTCAGTCTGTGGAGCTGCCTGCAGGCTGT  350

seq1  GCAGTGTGTTCTAGGCTCCCATGCTGAGGTGGGCTTTGGTGGTGTATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGTTCTAGGCTCCCATGCTGAGGTGGGCTTTGGTGGTGTATCTA  400

seq1  TCTTGGAGTCATATCTGTTCCTATGAGTGACCCCTCACCCATATTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGTCATATCTGTTCCTATGAGTGACCCCTCACCCATATTCCCAT  450

seq1  AAGTGATACCAATAAAACTCACTGGTTCGCCAAGTTGGATTTTGGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATACCAATAAAACTCACTGGTTCGCCAAGTTGGATTTTGGTCTGT  500

seq1  TGTGAGTTCAGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCAGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  550

seq1  GTGTGTGTGTGTGTTGCTTCTTCTCGCAAAATTCACACAACAGGCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTGCTTCTTCTCGCAAAATTCACACAACAGGCTTCTG  600

seq1  GCTTTTGGCCTCAGACACCTTAGACAAGAGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCCTCAGACACCTTAGACAAGAGAATTC  635