BAC Information

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BAC

Clone NameB6Ng01-291P01
Chromosome2 (Build37)5 (Build37)
Map Location 145,654,279 - 145,655,50858,660,008 - 58,660,042
singlet/doubletsingletsinglet
Overlap geneRin2
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P01.bB6Ng01-291P01.g
ACCGA088702GA088703
length1,2281,029
definitionB6Ng01-291P01.b B6Ng01-291P01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,654,279 - 145,655,508)(58,660,008 - 58,660,042)
sequence
gaattccatcagaacgcgtctctagtgagacagttgtatccaatacactg
ctctgtgtgtgcccttcttgaagaactctgtccccgcagctaccactttt
aaagcaattcgttaatgttggatataattcagcaagagtacatgagtatg
tagctaaggtgagttttcacagagaaaccccacagccaggaaccagattg
gaaaacagtttcccaatctccccaagggtttcctctggtcatacctgctt
caggtttaaccagtgtcctgactggcagtgctctaggtgtttctgattga
tgaggttattgtttgtctctattttgatactgggaattgagcccagttca
ctatgcacctgctctacctttgcctgatttccaactttatataactggaa
tcgtaacagcatatgcctctagaagtctgatttcttttgtctcaactttt
ttttttttttaacatttagacaactttattatcttgttttggttttgttt
tttgttttttcgagacagggtttctctgtgtagccctggctgtcctggaa
ctcactctgtagaccaggcttggcctcgaactcagaaatccacctgcctc
tgcctcccaagtgctgggattaaaggcgtgcgccaccaccgcccggcttg
tctcaacttttaaaaaaataatattccaattatgtgaacacaccaaaact
tttaaaccattctgctattgactgatgatatttgacttggttccaggtca
gcgttggattttgtcgttgttttgcatttttgtttgttgagtggcatctc
atatagtcccagctggactccagttcgctgagtagttgaacatgacctta
ggagtggaggagggcatctcactaagtgttcctgtctggcctctaagtca
caaggaagattcttgcctctgcctgccaagtgctggaattaaagtcctgg
gtgctcagcgacctagaactctgggtctgctgctgctgctcttactgatg
gattacaggtgtgctgcaatatacactgtcagtttgtctgaagaacttgt
tcagtattttcctcactagtttgacctcactccactaacagcatcattac
ttataaaatgcgtttcagatatttttgggagttcttccctatgattaact
tagccaggtatcagttttcccttatttaagttacttagtactctagatag
ggatctcagagccacttcagtttattct

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaaaagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagagga
aaggatggaccatgtagagactgccatatccagggatccaccccattaat
cagcatccaaacgctgacaccattgcatacactagcaagatttcgctgaa
aggacccagttatagctcttttcttgttgagactatgccggggcctagca
aacacagaagtggatgatcacagtcagcttattggatgggtcatatggcc
cctaatggaaggagcctagagaaatttacctaggagctaaagggatctgc
caaccctataggtggaacaacattatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145654279_145655508
seq2: B6Ng01-291P01.b_51_1278

seq1  GAATTCCATCAGAACGCGTCTCTAGTGAGACAGTTGTATCCAATACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGAACGCGTCTCTAGTGAGACAGTTGTATCCAATACACTG  50

seq1  CTCTGTGTGTGCCCTTCTTGAAGAACTCTGTCCCCGCAGCTACCACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGCCCTTCTTGAAGAACTCTGTCCCCGCAGCTACCACTTTT  100

seq1  AAAGCAATTCGTTAATGTTGGATATAATTCAGCAAGAGTACATGAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATTCGTTAATGTTGGATATAATTCAGCAAGAGTACATGAGTATG  150

seq1  TAGCTAAGGTGAGTTTTCACAGAGAAACCCCACAGCCAGGAACCAGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGGTGAGTTTTCACAGAGAAACCCCACAGCCAGGAACCAGATTG  200

seq1  GAAAACAGTTTCCCAATCTCCCCAAGGGTTTCCTCTGGTCATACCTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGTTTCCCAATCTCCCCAAGGGTTTCCTCTGGTCATACCTGCTT  250

seq1  CAGGTTTAACCAGTGTCCTGACTGGCAGTGCTCTAGGTGTTTCTGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAACCAGTGTCCTGACTGGCAGTGCTCTAGGTGTTTCTGATTGA  300

seq1  TGAGGTTATTGTTTGTCTCTATTTTGATACTGGGAATTGAGCCCAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTATTGTTTGTCTCTATTTTGATACTGGGAATTGAGCCCAGTTCA  350

seq1  CTATGCACCTGCTCTACCTTTGCCTGATTTCCAACTTTATATAACTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACCTGCTCTACCTTTGCCTGATTTCCAACTTTATATAACTGGAA  400

seq1  TCGTAACAGCATATGCCTCTAGAAGTCTGATTTCTTTTGTCTCAACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAACAGCATATGCCTCTAGAAGTCTGATTTCTTTTGTCTCAACTTTT  450

seq1  TTTTTTTTTTAACATTTAGACAACTTTATTATCTTGTTTTGGTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACATTTAGACAACTTTATTATCTTGTTTTGGTTTTGTTT  500

seq1  TTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  550

seq1  CTCACTCTGTAGACCAGGCTTGGCCTCGAACTCAGAAATCCACCTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTTGGCCTCGAACTCAGAAATCCACCTGCCTC  600

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGCTTG  650

seq1  TCTCAACTTTTAAAAAAATAATATTCCAATTATGTGAACACACCAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTTTTAAAAAAATAATATTCCAATTATGTGAACACACCAAAACT  700

seq1  TTTAAACCATTCTGCTATTGACTGATGATATTTGACTTGGTTCCAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCATTCTGCTATTGACTGATGATATTTGACTTGGTTCCAGGTCA  750

seq1  GCGTTGGATTTTGTCGTTGTTTTGCATTTTTGTTTGTTGAGTGGCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGATTTTGTCGTTGTTTTGCATTTTTGTTTGTTGAGTGGCATCTC  800

seq1  ATATAGTCCCAGCTGGACTCCAGTTCGCTGAGTAGTTGAACATGACCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCCCAGCTGGACTCCAGTTCGCTGAGTAGTTGAACATGACCTTA  850

seq1  GGAGTGGAGGAGGGCATCTCACTAAGTGTCCCTGTCTGGCCTCTAAGTCA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGTGGAGGAGGGCATCTCACTAAGTGTTCCTGTCTGGCCTCTAAGTCA  900

seq1  C-AGGAAGATTCTTGCCTCTGCCTGCCAAGTGCTGGAATTAAAGTCCTGG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGATTCTTGCCTCTGCCTGCCAAGTGCTGGAATTAAAGTCCTGG  950

seq1  GTGCTCAGCGACCTAGAACTCTTGGTCTGCTTGCTGCTGCCTCTTAACTG  999
      |||||||||||||||||||||| ||||||| |||||||| ||||| ||||
seq2  GTGCTCAGCGACCTAGAACTCTGGGTCTGC-TGCTGCTG-CTCTT-ACTG  997

seq1  ATGGAATTACAGGTGTGCTGCAATATACACTGTCAGTTTGTCTGAAGAAC  1049
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGG-ATTACAGGTGTGCTGCAATATACACTGTCAGTTTGTCTGAAGAAC  1046

seq1  -TGTTCAGTA-TTTCCTCAACTAGTTTGA-CTCACTCCACTAACAGCATC  1096
       ||||||||| ||||||| |||||||||| ||||||||||||||||||||
seq2  TTGTTCAGTATTTTCCTC-ACTAGTTTGACCTCACTCCACTAACAGCATC  1095

seq1  ATAAC-TATAAATATCG-TTCAGATATTTTT-GTAGTTCTTCCCTTAAGA  1143
      || || ||||||   || ||||||||||||| | |||||||||| || ||
seq2  ATTACTTATAAAATGCGTTTCAGATATTTTTGGGAGTTCTTCCC-TATGA  1144

seq1  TTACTATACCCA-GTA-CAG-TTTCCTCTATTTAAAAAGTTACCTTTAGT  1190
      |||   || ||| ||| ||| |||||  |||||   |||||||  |||||
seq2  TTAACTTAGCCAGGTATCAGTTTTCCCTTATTT---AAGTTAC--TTAGT  1189

seq1  AACTTCAAATATGGGAT-TCAAAGCCACCTCAGTTTATTCT  1230
       |||  | ||| ||||| ||| |||||| ||||||||||||
seq2  -ACTCTAGATA-GGGATCTCAGAGCCACTTCAGTTTATTCT  1228


seq1: chr5_58660008_58660042
seq2: B6Ng01-291P01.g_1063_1098 (reverse)

seq1  TTCATAATGTTGTTCCACCGATAGGGTT-GCAGATC  35
      ||||||||||||||||||| |||||||| |||||||
seq2  TTCATAATGTTGTTCCACCTATAGGGTTGGCAGATC  36


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