BAC Information

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BAC

Clone NameB6Ng01-292I21
Chromosome5 (Build37)
Map Location 50,958,897 - 51,054,094
singlet/doubletdoublet
Overlap geneLOC100041015
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneLOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292I21.bB6Ng01-292I21.g
ACCGA089165GA089166
length1,1851,101
definitionB6Ng01-292I21.b B6Ng01-292I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,052,888 - 51,054,094)(50,958,897 - 50,960,006)
sequence
gaattccacattccacactaaggcagcagattacaaaacagaaaactcag
ttggcctgaggcacatagcctaaatcaccgaggcagcatgtgaaaactca
tttgagtaaagaaaatatgtatttcatatgcttcagaactaaaattggaa
atctggaaccaaagacttcaaataagccatactaattatctttagctatt
tgttttcactttttcagagggttggcaataaagcataggactgtaatcag
gataaagaacaccagcttggcctctagtcaaattcaaccagctacctatg
tctgtacatatttctttaccttctacatgtctaagagtgttctctgcacc
caggaatatgtacaaatgtgttacatattctcatagacacagaaatagag
taagtttttaaatttaatttatggatataaaatatgaaatctatatttgt
agaatattaatttcatatgtataatattgtgcctaatttatttattgaca
aaattaccataaggaatcatgagattgtacttaaagacaactagaaactt
ataaggaatcatatctgacttcaaaggagttatagacagcccaagaattt
caaggttgattataaatatttttacaaaagtttccatttgcaaaagatat
gaaatatcagatgtgtgtgtgtgagctagaaaatagaaatgggccaaaaa
gtccataaaataagaatcacttggttggactattgggggtatgttagcac
ataaagaattttcttcttatttgaatttgaaacaagattaagacttgaga
agacaaaggcacacatccaaagatatgctcataacagatacaatatcggg
ggcttcagaaaatattcatcatacctggagagtcaggtgtccatgtggga
aaataaaaatggggtccaaaaatacagaaatttatacaaataacagcacg
caagaaaagaaactgaaaggatttcaaaaccataaatgacatgatgtgat
atgtgtatcagcagacaccttttgatacaagttgaatatggggcaggctt
gggctgtgcagcagagctctctcatgctacagcaatatcaagaagataaa
ctgcagagacaagctctgctgaaatgttctaattcagagaactgagttga
gtgaatctgaatataaaggctgttttctggctctg

gaattcattcacgtgcctagaactgatctccatgtcacctgcttctactt
cttctcacccctcctcccctttctccccttcttccctttctcctcctctt
ctctttttatgtattgaaattcatcattttatatcagcactatctccttc
ataatctgtagactgacttcttgagagaacacggaaaggaagttaccagg
agtcttcaatgtgacaaatttcaaattgacacagtgtcaattagagtcaa
tgagaataattaaaatagctccaccccctgatgagaggattagctttcat
ggtaaatagtggcagcaaccattacagtctttctaccacaatagggtaag
tagaagaaatgtaagatagccaggccccactatccaacaagaccttgaaa
ttttatttttccatagaggaggcagacagtaggagattaactcatggcct
cagctctcttccccctggagggaagtgtagcatcttcactaatatatagc
ttcccacagatttttaacaaaattgaagacataggaagataaaggaaaaa
aaatctgacttgagactttatttcgatgttcagcactggataactcagga
tttaaagagtttggatgtgaaagggttacaccataataggcttcagttag
cctttcagagaaggtgcaattaggacttgaaaaagaatatgtgaggatcc
caatcttaagttggctgctcagcacattcggactttcttatggtatatgg
agaagactccattctcgtggtgtcacattacacttagaattagccactgt
ctaaggattgacattcatggcctcaactcttttctgaaatgactgttttt
aagattttcttaccatagtggtctcttctacccttgagactgcatctagt
ttctcgggcctttccctttgggacttaagatgatgtgagctctcatctcc
attctgtttatttttttttcatttcttaatgatgtaaacatataaatttc
tgatttcacttgcactgttgagggatacagaaaattagaatagtgtcaga
acttaaccctctctctgttaagcctattgcaacctgactctgtccagatg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51052888_51054094
seq2: B6Ng01-292I21.b_43_1227 (reverse)

seq1  CAGAG-CAGAAAACAGCCTTTATAATCAAGAATCTACTTCAAAACTCATG  49
      ||||| |||||||||||||||||| || ||| || |||    ||||||  
seq2  CAGAGCCAGAAAACAGCCTTTATATTC-AGATTC-ACT---CAACTCAGT  45

seq1  TCTCTTGAATTAGACATTTTCAGCCAGAGCTTTGGTTCTCTTGCCAAGGT  99
      |||| |||||||||   |||||| ||||||||    |||| |||    ||
seq2  TCTC-TGAATTAGAACATTTCAG-CAGAGCTT---GTCTC-TGC---AGT  86

seq1  TTATCTCTTTGATATTGCTGTGGCATGGAGGAAGGGCTCTGCCTGCCACA  149
      ||||||  ||||||||||||| |||| |||  || |||||| ||| ||||
seq2  TTATCTTCTTGATATTGCTGTAGCAT-GAG--AGAGCTCTG-CTG-CACA  131

seq1  GCCCAAGCCTGCCCCATTATCAACCTTGTATCAAAAGGTGTCTGCCTGAT  199
      |||||||||||||||||  |||| |||||||||||||||||||| |||||
seq2  GCCCAAGCCTGCCCCATATTCAA-CTTGTATCAAAAGGTGTCTG-CTGAT  179

seq1  ACACATATCACATCATGTCATTTTATGGTTTTGAAATCCTTTCAGTTTCT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACATATCACATCATGTCA-TTTATGGTTTTGAAATCCTTTCAGTTTCT  228

seq1  TTTCCTTGCGTGCTGTTATTTGTATAAATTTCTGTATTTTTGGACCCCAT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-CTTGCGTGCTGTTATTTGTATAAATTTCTGTATTTTTGGACCCCAT  277

seq1  TTTTATTTTCCCACATGGACACCTGACTCTCCAGGTATGATGAATATTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCCCACATGGACACCTGACTCTCCAGGTATGATGAATATTTT  327

seq1  CTGAAGCCCCCGATATTGTATCTGTTATGAGCATATCTTTGGATGTGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCCCCGATATTGTATCTGTTATGAGCATATCTTTGGATGTGTGC  377

seq1  CTTTGTCTTCTCAAGTCTTAATCTTGTTTCAAATTCAAATAAGAAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTCTCAAGTCTTAATCTTGTTTCAAATTCAAATAAGAAGAAAA  427

seq1  TTCTTTATGTGCTAACATACCCCCAATAGTCCAACCAAGTGATTCTTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATGTGCTAACATACCCCCAATAGTCCAACCAAGTGATTCTTATT  477

seq1  TTATGGACTTTTTGGCCCATTTCTATTTTCTAGCTCACACACACACATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGACTTTTTGGCCCATTTCTATTTTCTAGCTCACACACACACATCT  527

seq1  GATATTTCATATCTTTTGCAAATGGAAACTTTTGTAAAAATATTTATAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCATATCTTTTGCAAATGGAAACTTTTGTAAAAATATTTATAAT  577

seq1  CAACCTTGAAATTCTTGGGCTGTCTATAACTCCTTTGAAGTCAGATATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGAAATTCTTGGGCTGTCTATAACTCCTTTGAAGTCAGATATGA  627

seq1  TTCCTTATAAGTTTCTAGTTGTCTTTAAGTACAATCTCATGATTCCTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATAAGTTTCTAGTTGTCTTTAAGTACAATCTCATGATTCCTTAT  677

seq1  GGTAATTTTGTCAATAAATAAATTAGGCACAATATTATACATATGAAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTGTCAATAAATAAATTAGGCACAATATTATACATATGAAATT  727

seq1  AATATTCTACAAATATAGATTTCATATTTTATATCCATAAATTAAATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTACAAATATAGATTTCATATTTTATATCCATAAATTAAATTTA  777

seq1  AAAACTTACTCTATTTCTGTGTCTATGAGAATATGTAACACATTTGTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTACTCTATTTCTGTGTCTATGAGAATATGTAACACATTTGTACA  827

seq1  TATTCCTGGGTGCAGAGAACACTCTTAGACATGTAGAAGGTAAAGAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGGGTGCAGAGAACACTCTTAGACATGTAGAAGGTAAAGAAATA  877

seq1  TGTACAGACATAGGTAGCTGGTTGAATTTGACTAGAGGCCAAGCTGGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGACATAGGTAGCTGGTTGAATTTGACTAGAGGCCAAGCTGGTGT  927

seq1  TCTTTATCCTGATTACAGTCCTATGCTTTATTGCCAACCCTCTGAAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCCTGATTACAGTCCTATGCTTTATTGCCAACCCTCTGAAAAAG  977

seq1  TGAAAACAAATAGCTAAAGATAATTAGTATGGCTTATTTGAAGTCTTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAAATAGCTAAAGATAATTAGTATGGCTTATTTGAAGTCTTTGG  1027

seq1  TTCCAGATTTCCAATTTTAGTTCTGAAGCATATGAAATACATATTTTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTTCCAATTTTAGTTCTGAAGCATATGAAATACATATTTTCTT  1077

seq1  TACTCAAATGAGTTTTCACATGCTGCCTCGGTGATTTAGGCTATGTGCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAATGAGTTTTCACATGCTGCCTCGGTGATTTAGGCTATGTGCCT  1127

seq1  CAGGCCAACTGAGTTTTCTGTTTTGTAATCTGCTGCCTTAGTGTGGAATG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAACTGAGTTTTCTGTTTTGTAATCTGCTGCCTTAGTGTGGAATG  1177

seq1  TGGAATTC  1207
      ||||||||
seq2  TGGAATTC  1185


seq1: chr5_50958897_50960006
seq2: B6Ng01-292I21.g_66_1166

seq1  GAATTCATTCACGTGCCTAGAACTGATCTCCATGTCACCTGCTTCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACGTGCCTAGAACTGATCTCCATGTCACCTGCTTCTACTT  50

seq1  CTTCTCACCCCTCCTCCCCTTTCTCCCCTTCTTCCCTTTCTCCTCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACCCCTCCTCCCCTTTCTCCCCTTCTTCCCTTTCTCCTCCTCTT  100

seq1  CTCTTTTTATGTATTGAAATTCATCATTTTATATCAGCACTATCTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTATGTATTGAAATTCATCATTTTATATCAGCACTATCTCCTTC  150

seq1  ATAATCTGTAGACTGACTTCTTGAGAGAACACGGAAAGGAAGTTACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTAGACTGACTTCTTGAGAGAACACGGAAAGGAAGTTACCAGG  200

seq1  AGTCTTCAATGTGACAAATTTCAAATTGACACAGTGTCAATTAGAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAATGTGACAAATTTCAAATTGACACAGTGTCAATTAGAGTCAA  250

seq1  TGAGAATAATTAAAATAGCTCCACCCCCTGATGAGAGGATTAGCTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAATTAAAATAGCTCCACCCCCTGATGAGAGGATTAGCTTTCAT  300

seq1  GGTAAATAGTGGCAGCAACCATTACAGTCTTTCTACCACAATAGGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAGTGGCAGCAACCATTACAGTCTTTCTACCACAATAGGGTAAG  350

seq1  TAGAAGAAATGTAAGATAGCCAGGCCCCACTATCCAACAAGACCTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAATGTAAGATAGCCAGGCCCCACTATCCAACAAGACCTTGAAA  400

seq1  TTTTATTTTTCCATAGAGGAGGCAGACAGTAGGAGATTAACTCATGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTCCATAGAGGAGGCAGACAGTAGGAGATTAACTCATGGCCT  450

seq1  CAGCTCTCTTCCCCCTGGAGGGAAGTGTAGCATCTTCACTAATATATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTTCCCCCTGGAGGGAAGTGTAGCATCTTCACTAATATATAGC  500

seq1  TTCCCACAGATTTTTAACAAAATTGAAGACATAGGAAGATAAAGGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGATTTTTAACAAAATTGAAGACATAGGAAGATAAAGGAAAAA  550

seq1  AAATCTGACTTGAGACTTTATTTCGATGTTCAGCACTGGATAACTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGACTTGAGACTTTATTTCGATGTTCAGCACTGGATAACTCAGGA  600

seq1  TTTAAAGAGTTTGGATGTGAAAGGGTTACACCATAATAGGCTTCAGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAGTTTGGATGTGAAAGGGTTACACCATAATAGGCTTCAGTTAG  650

seq1  CCTTTCAGAGAAGGTGCAATTAGGACTTGAAAAAGAATATGTGAGGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGAGAAGGTGCAATTAGGACTTGAAAAAGAATATGTGAGGATCC  700

seq1  CAATCTTAAGTTGGCTGCTCAGCACATTCGGACTTTCTTATGGTATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAAGTTGGCTGCTCAGCACATTCGGACTTTCTTATGGTATATGG  750

seq1  AGAAGACTCCATTCTCGTGGTGTCACATTACACTTAGAATTAGCCACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTCCATTCTCGTGGTGTCACATTACACTTAGAATTAGCCACTGT  800

seq1  CTAAGGATTGACATTCATGGCCTCAACTCTTTTCTGAAATGACTGTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATTGACATTCATGGCCTCAACTCTTTTCTGAAATGACTGTTTTT  850

seq1  AAGATTTTCTTACCATAGTGGTCTCTTCTACCCTTGAGACTGCATCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCTTACCATAGTGGTCTCTTCTACCCTTGAGACTGCATCTAGT  900

seq1  TTCTC-GGCCTTTCCCTTTGGGAACTTTAAGATGAATGTGAGCTCTCATC  949
      ||||| |||||||||||||||||   |||||||| |||||||||||||||
seq2  TTCTCGGGCCTTTCCCTTTGGGA--CTTAAGATG-ATGTGAGCTCTCATC  947

seq1  TCCATTCTTGTTTAATTTTTTTTCATTTTCTTTAATGATGTAAACATTAA  999
      ||||||| |||||| |||||||||||||   ||||||||||||||||  |
seq2  TCCATTC-TGTTTATTTTTTTTTCATTT--CTTAATGATGTAAACAT--A  992

seq1  TAAAATTTCTGATTCCACTTGCACTGTTTGAGGGATACAGAAAATTTAGA  1049
      | |||||||||||| ||||||||||| |||||||||||||||||||   |
seq2  T-AAATTTCTGATTTCACTTGCACTG-TTGAGGGATACAGAAAATTAGAA  1040

seq1  TAGTGTCAGGACTTA---CCCTCTCTGTT-AGGCTATTGCAAAACCCTGG  1095
      ||||||||| |||||   | ||||||||| || |||||||||   |||| 
seq2  TAGTGTCAGAACTTAACCCTCTCTCTGTTAAGCCTATTGCAA---CCTGA  1087

seq1  CTCTGTCAAAGATGA  1110
      |||||||  ||||||
seq2  CTCTGTC-CAGATGA  1101


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