BAC Information

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BAC

Clone NameB6Ng01-292N08
Chromosome5 (Build37)
Map Location 13,221,131 - 13,352,179
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N08.bB6Ng01-292N08.g
ACCGA089370GA089371
length1,2051,124
definitionB6Ng01-292N08.b B6Ng01-292N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,350,972 - 13,352,179)(13,221,131 - 13,222,261)
sequence
gaattcttatatatatcttaacttgctgatattgaaaattttacactttg
gtttgactcataagctgggtttaaagcctcccctcctgacagaaaaacaa
acaaacaaaaagtgtagcattatttaactgtttaattgcttccattttgt
ttgggaaacttaaccttaacctaaccttcgtggctactgtgcaagttaaa
atcaaatggctttgacaatctgagtcccagaataataaactctttgggcc
gtaaggctgtccacctcaagcagagggaaccaagcagtcttcagcttgtt
tgtgttcgttgattgataatgagcagtttctctgtctacatctgtgtgag
actatgtgaggtctgttggagcctgctgggagttgagaggagggagccac
aaacacagtgggcttaaaaaattgttctaaagatgacatttgggaggcaa
atattttggccacaggccaataagatttttttttaatgctaaaacaagcc
tggcactttacattatcattttaatctgttttcacaatgcaatgtaagtc
gacagcttactcttttaaagtcagaggagcattcaacttcaacatccacc
aataagttatttttaaaaacatacaaagaatgcagattttcagagttatt
tttctatttaatcattcatttgtaaccccttatttgttaagtctgggata
tcttaattctgactttgctttgcaatttaatttggaaataaatatgcatg
tccaatacacacacacacacacacacacacacacatacacacacacacac
gtgcgcacacacacacacaatttcttggagggagtatttactttttaata
aatggagatgaacttgtaatgatgatattcataaagcatattcttttcct
tttcctcagaatttcacagcatcaataagaacaaagataaaatctgcctc
aaaaccattcatgcaacaagaaacatatgggttgggttttaacatattga
taccttccatatcactactgatatctttattctatgccaccagcttttaa
atttttatcagtacgtggctctctgttttcaaccacatttggtggataat
aaaataatcttgctaatcccagtgctctgcattggaagtgatcagggaag
cagctggttggaacttcctactgagaagcagccaggttagaaagccagat
agggg

gaattcatagtttaagactatcctctgatatatagggagttccatgccag
catgagtgacaggaagctctagctaaagaaagagggaagagaaaacagta
agcaagtggatggaagctgtcttaatgacttactgcagagaagaaaagca
atggtgttggggtattatttgtctccacagttcacttgtaaggatcagaa
ataaacctctgtcaagactctgagagtttattgttattttgcatgaacat
atttcttgactcatacacttatgtgaagttattcatatgaattatcttca
aataaaacattattgtggatagggaaagcatgcttggctagtattttaag
atacatgttcaattttattttaatatattaaaatttataatatggagtgt
tacattggtagaattgttttctatcctcaaggctctgtaatatagggacc
taaaataaaatttaacacatttgacatagcgatgtgaaaaactgcagggg
attatttttaaattttccagtgtcataggaaagtgatccctgctctaaca
tcttcacaaaaataaatggaacaaggaaccaatgagttatttaaaggact
cattaactttcatatgaccctatttgtaattgagacagttgtgtcctaga
tgtaccctccaagaatgatttatgaggtttccccgcactccaaattgact
gacaaaggggagaaaagtgtgctttaaccaaacctatgaggcccaggcaa
aagaggaggcatctgctaaagagctcatgatacagtgtaatccttagtat
ttcaaaacataattacttttcttaaaggatttaacattctcagttaataa
aaaggtaaattcatgaaaatattctgatttgttataagctgtagcaagtt
tagatgtaagatatttttaacttattttccgggtggaaatatacttttct
gcaagtgcattgcatatgcaaaatggtatagaagacttactgtttttatt
ctgcatacatccaatctaccccatgcaggtgaatgtcagtcttgttctat
ttggtacaatatttactcattgcaataaattgtcagttaattcacttctc
attcattaaggcattattgcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13350972_13352179
seq2: B6Ng01-292N08.b_46_1250 (reverse)

seq1  CCCCT-CCTGGC-TTCTAACCT-GCTGCTTCTCAGTTAGAAGGTCCAACC  47
      |||||  ||||| ||||||||| |||||||||||||  |||| ||||| |
seq2  CCCCTATCTGGCTTTCTAACCTGGCTGCTTCTCAGTAGGAAGTTCCAA-C  49

seq1  CAGCTGCTTCCCTGATCACTTCCAATGCAGAGCACCTTGGATTAGCAAAG  97
      |||||||||||||||||||||||||||||||||| || |||||||| |||
seq2  CAGCTGCTTCCCTGATCACTTCCAATGCAGAGCA-CTGGGATTAGC-AAG  97

seq1  ATAATTTTTATTAT-CACCAAATGTGGTTGAAAACCAGAGAGCCACGGTA  146
      || | ||||||||| ||||||||||||||||||| ||||||||||| |||
seq2  ATTA-TTTTATTATCCACCAAATGTGGTTGAAAA-CAGAGAGCCAC-GTA  144

seq1  CTGATAAAAATTTTAAAAGCTGGTGGCATAGAATAAAGATATCAGTAGTG  196
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAAA-TTTAAAAGCTGGTGGCATAGAATAAAGATATCAGTAGTG  193

seq1  ATATGGAAGGTATCAATATGTTAAAACCCAACCCATATGTTTCTTGTTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAGGTATCAATATGTTAAAACCCAACCCATATGTTTCTTGTTGC  243

seq1  ATGAATGGTTTTGAGGCAGATTTTATCTTTGTTCTTATTGATGCTGTGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTTTTGAGGCAGATTTTATCTTTGTTCTTATTGATGCTGTGAA  293

seq1  ATTCTGAGGAAAAGGAAAAGAATATGCTTTATGAATATCATCATTACAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGAAAAGGAAAAGAATATGCTTTATGAATATCATCATTACAAG  343

seq1  TTCATCTCCATTTATTAAAAAGTAAATACTCCCTCCAAGAAATTGTGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCCATTTATTAAAAAGTAAATACTCCCTCCAAGAAATTGTGTGT  393

seq1  GTGTGTGCGCACGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCACGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  443

seq1  GTGTGTATTGGACATGCATATTTATTTCCAAATTAAATTGCAAAGCAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTGGACATGCATATTTATTTCCAAATTAAATTGCAAAGCAAAG  493

seq1  TCAGAATTAAGATATCCCAGACTTAACAAATAAGGGGTTACAAATGAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTAAGATATCCCAGACTTAACAAATAAGGGGTTACAAATGAATG  543

seq1  ATTAAATAGAAAAATAACTCTGAAAATCTGCATTCTTTGTATGTTTTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAGAAAAATAACTCTGAAAATCTGCATTCTTTGTATGTTTTTAA  593

seq1  AAATAACTTATTGGTGGATGTTGAAGTTGAATGCTCCTCTGACTTTAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTATTGGTGGATGTTGAAGTTGAATGCTCCTCTGACTTTAAAA  643

seq1  GAGTAAGCTGTCGACTTACATTGCATTGTGAAAACAGATTAAAATGATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCTGTCGACTTACATTGCATTGTGAAAACAGATTAAAATGATAA  693

seq1  TGTAAAGTGCCAGGCTTGTTTTAGCATTAAAAAAAAATCTTATTGGCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTGCCAGGCTTGTTTTAGCATTAAAAAAAAATCTTATTGGCCTG  743

seq1  TGGCCAAAATATTTGCCTCCCAAATGTCATCTTTAGAACAATTTTTTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAAATATTTGCCTCCCAAATGTCATCTTTAGAACAATTTTTTAAG  793

seq1  CCCACTGTGTTTGTGGCTCCCTCCTCTCAACTCCCAGCAGGCTCCAACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTGTTTGTGGCTCCCTCCTCTCAACTCCCAGCAGGCTCCAACAG  843

seq1  ACCTCACATAGTCTCACACAGATGTAGACAGAGAAACTGCTCATTATCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACATAGTCTCACACAGATGTAGACAGAGAAACTGCTCATTATCAA  893

seq1  TCAACGAACACAAACAAGCTGAAGACTGCTTGGTTCCCTCTGCTTGAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGAACACAAACAAGCTGAAGACTGCTTGGTTCCCTCTGCTTGAGGT  943

seq1  GGACAGCCTTACGGCCCAAAGAGTTTATTATTCTGGGACTCAGATTGTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCTTACGGCCCAAAGAGTTTATTATTCTGGGACTCAGATTGTCA  993

seq1  AAGCCATTTGATTTTAACTTGCACAGTAGCCACGAAGGTTAGGTTAAGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTTGATTTTAACTTGCACAGTAGCCACGAAGGTTAGGTTAAGGT  1043

seq1  TAAGTTTCCCAAACAAAATGGAAGCAATTAAACAGTTAAATAATGCTACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCCCAAACAAAATGGAAGCAATTAAACAGTTAAATAATGCTACA  1093

seq1  CTTTTTGTTTGTTTGTTTTTCTGTCAGGAGGGGAGGCTTTAAACCCAGCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTGTTTGTTTTTCTGTCAGGAGGGGAGGCTTTAAACCCAGCT  1143

seq1  TATGAGTCAAACCAAAGTGTAAAATTTTCAATATCAGCAAGTTAAGATAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCAAACCAAAGTGTAAAATTTTCAATATCAGCAAGTTAAGATAT  1193

seq1  ATATAAGAATTC  1208
      ||||||||||||
seq2  ATATAAGAATTC  1205


seq1: chr5_13221131_13222261
seq2: B6Ng01-292N08.g_66_1189

seq1  GAATTCATAGTTTAAGACTATCCTCTGATATATAGGGAGTTCCATGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTAAGACTATCCTCTGATATATAGGGAGTTCCATGCCAG  50

seq1  CATGAGTGACAGGAAGCTCTAGCTAAAGAAAGAGGGAAGAGAAAACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGACAGGAAGCTCTAGCTAAAGAAAGAGGGAAGAGAAAACAGTA  100

seq1  AGCAAGTGGATGGAAGCTGTCTTAATGACTTACTGCAGAGAAGAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGGATGGAAGCTGTCTTAATGACTTACTGCAGAGAAGAAAAGCA  150

seq1  ATGGTGTTGGGGTATTATTTGTCTCCACAGTTCACTTGTAAGGATCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGGGGTATTATTTGTCTCCACAGTTCACTTGTAAGGATCAGAA  200

seq1  ATAAACCTCTGTCAAGACTCTGAGAGTTTATTGTTATTTTGCATGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTCTGTCAAGACTCTGAGAGTTTATTGTTATTTTGCATGAACAT  250

seq1  ATTTCTTGACTCATACACTTATGTGAAGTTATTCATATGAATTATCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGACTCATACACTTATGTGAAGTTATTCATATGAATTATCTTCA  300

seq1  AATAAAACATTATTGTGGATAGGGAAAGCATGCTTGGCTAGTATTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACATTATTGTGGATAGGGAAAGCATGCTTGGCTAGTATTTTAAG  350

seq1  ATACATGTTCAATTTTATTTTAATATATTAAAATTTATAATATGGAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTCAATTTTATTTTAATATATTAAAATTTATAATATGGAGTGT  400

seq1  TACATTGGTAGAATTGTTTTCTATCCTCAAGGCTCTGTAATATAGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGTAGAATTGTTTTCTATCCTCAAGGCTCTGTAATATAGGGACC  450

seq1  TAAAATAAAATTTAACACATTTGACATAGCGATGTGAAAAACTGCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATTTAACACATTTGACATAGCGATGTGAAAAACTGCAGGGG  500

seq1  ATTATTTTTAAATTTTCCAGTGTCATAGGAAAGTGATCCCTGCTCTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAAATTTTCCAGTGTCATAGGAAAGTGATCCCTGCTCTAACA  550

seq1  TCTTCACAAAAATAAATGGAACAAGGAACCAATGAGTTATTTAAAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAAAATAAATGGAACAAGGAACCAATGAGTTATTTAAAGGACT  600

seq1  CATTAACTTTCATATGACCCTATTTGTAATTGAGACAGTTGTGTCCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTTCATATGACCCTATTTGTAATTGAGACAGTTGTGTCCTAGA  650

seq1  TGTACCCTCCAAGAATGATTTATGAGGTTTCCCCGCACTCCAAATTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTCCAAGAATGATTTATGAGGTTTCCCCGCACTCCAAATTGACT  700

seq1  GACAAAGGGGAGAAAAGTGTGCTTTAACCAAACCTATGAGGCCCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGGGAGAAAAGTGTGCTTTAACCAAACCTATGAGGCCCAGGCAA  750

seq1  AAGAGGAGGCATCTGCTAAAGAGCTCATGATACAGTGTAATCCTTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGGCATCTGCTAAAGAGCTCATGATACAGTGTAATCCTTAGTAT  800

seq1  TTCAAAACATAATTACTTTTCTTAAAGGATTTAACATTCTCAGTTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACATAATTACTTTTCTTAAAGGATTTAACATTCTCAGTTAATAA  850

seq1  AAAGGTAAATTCATGAAAATATTCTGATTTGTTATAAGCTGTAGCAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAATTCATGAAAATATTCTGATTTGTTATAAGCTGTAGCAAGTT  900

seq1  TAGATGTAAGATA-TTTTAACTTATTTTCCGGGTGGAAATATAC-TTTCT  948
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TAGATGTAAGATATTTTTAACTTATTTTCCGGGTGGAAATATACTTTTCT  950

seq1  GCAAGTGCATTGCATATTGCAAAATGGTATAAGAGAACTTACTG-TTTTA  997
      |||||||||||||||| ||||||||||||| |||  |||||||| |||||
seq2  GCAAGTGCATTGCATA-TGCAAAATGGTAT-AGAAGACTTACTGTTTTTA  998

seq1  TTCTGCATTACAATCCAATCTACCCCATGCAAGGTTGAATGTCAGTC-TG  1046
      ||||||| ||| |||||||||||||||||||  | |||||||||||| ||
seq2  TTCTGCA-TAC-ATCCAATCTACCCCATGCA--GGTGAATGTCAGTCTTG  1044

seq1  TTCTATTTTGTTACAATATGTACCTCATTTGCATAAATTGT-AATTATAT  1095
      ||||| |||| |||||||| || ||||||   ||||||||| | |||  |
seq2  TTCTA-TTTGGTACAATATTTA-CTCATTGCAATAAATTGTCAGTTAATT  1092

seq1  CACTTCTCATTTTATTTAAGGGCATTATTTGCATTG  1131
      ||||||||| || |||  | ||||||| ||||||||
seq2  CACTTCTCA-TTCATT--AAGGCATTA-TTGCATTG  1124


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