BAC Information

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BAC

Clone NameB6Ng01-292P12
Chromosome5 (Build37)
Map Location 90,217,105 - 90,361,864
singlet/doubletdoublet
Overlap geneAdamts3
Upstream geneMkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292P12.bB6Ng01-292P12.g
ACCGA089468GA089469
length1,203853
definitionB6Ng01-292P12.b B6Ng01-292P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,217,105 - 90,218,320)(90,361,014 - 90,361,864)
sequence
gaattcagctcagtggtggagtgactgccattcattcctggcaccacaga
agatttaaaaacaaatctgaagatgactcaaaggaaatataaataaatgg
aatctatgaattcaaataaaggtagtaattaaacatgtaatagttatcca
ctaaaaatataatactaggtgtatttctgaggggcttaactttatagaat
gactcagcatcttaaattaatagctacaagaaaaatattaataatcatat
tttaatgcaacaggaagatgtctatcaatagctaccatgggaaatacaat
gttttaccgattctaacaaatgaaatagtataaagaaaacttaaaatcca
aaataatctcaaattttgctttagaaactatttaaaataacattcatgct
catatcaaagaaaattacattgtagaactttattagcatatactaaatat
atcaagtatgggaataatatatcaagtgagctttgtcatatttttagata
tgtagatatgggactatgtttgatcatagatattactgatgagtaaccac
tatgactagggttaaaatttacagcccctgtgcaaacaatgagccacagt
cattgcttctaaaaggacaagctagactatagtcagcactacagtaaaat
agttgtagatatacttgacagtatgaaagttccatttgtaaacaagaaat
ccttctggatcagaagaactcctcacacagcttgctattttccttttggt
aaaccccacacaatggggtcaatatagtctcagtgggtgttttcaaatgt
gttaaaataaaaataagtcacgtggagctcttttctgggtgcagaatctg
attcatggcctaagtttctatatttattcttaattaagaactgggtgtgt
ggaatatatgctggacacagcacacacacacacacacacacacacacaca
catacacacacactgaagctcaagaggaacatctgtatctttctccatac
ctcccaccttatttatttgcacagctctcagtaaatagtgactctttgtt
tttgttattctgactagccagtgagctcttagaacccactgtctctgctc
cccaacactattactcacaggttacctagaaatttggacttggcaccagg
tttctgattttataaccagtgctttacctactggagccaattcccccgct
ctg
gaattccagacaaagacattcaaatttattatggcaactgtgattatgga
acatagaaattctttgagtggaccactgaaattacagagctggagaattg
atgtgcttggatctcggccactgccgtagattccatttttatcacaccaa
atatgtgtgcacctgtttctttggctagtgtcagaaaatcctttgatatt
tccccagggcaatattttccttgtacacctcaaaaagggaaactgaagat
cctatgagcatttccaagaaatgcgttgtcttggggcagggagccatgac
ttctgcccaacaaaacaggtcggctttgggcagagtttgcactgcccacg
ttcaattgataccaatgtgaaaagcagatattccatctgtccaatgatca
aacacaaaaaattacacaggaatgtacagtatgctggtttgaacaacata
ggcgtttacttcaaccagcgagaaaagacctgcctatttatgtccgctgg
taaggacattagtgaggggaagctttgaggtttaagcagtcatataattg
atcccatcattgggacctacaatagagggttggtttcgggagcgaacact
gaacatttttaatggcactgtgaataaatggggcacgtggtaagaatgtg
aagcagatagactattatcttggacactttctgactagacagattgtgaa
cttggcctatcaaaagccacattgtcagtgttgcgggagtgaggttttac
gtgacattcacttggaaatctgataaagcacacagtttctcagttgtggg
ggctgagaaatattacgtacagattttaataggatgggggagggggggac
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_90217105_90218320
seq2: B6Ng01-292P12.b_51_1253

seq1  GAATTCAGCTCAGTGGTGGAGTGACTGCCATTCATTCCTGGCACCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGTGGTGGAGTGACTGCCATTCATTCCTGGCACCACAGA  50

seq1  AGATTTAAAAACAAATCTGAAGATGACTCAAAGGAAATATAAATAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAAACAAATCTGAAGATGACTCAAAGGAAATATAAATAAATGG  100

seq1  AATCTATGAATTCAAATAAAGGTAGTAATTAAACATGTAATAGTTATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAATTCAAATAAAGGTAGTAATTAAACATGTAATAGTTATCCA  150

seq1  CTAAAAATATAATACTAGGTGTATTTCTGAGGGGCTTAACTTTATAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATAATACTAGGTGTATTTCTGAGGGGCTTAACTTTATAGAAT  200

seq1  GACTCAGCATCTTAAATTAATAGCTACAAGAAAAATATTAATAATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCATCTTAAATTAATAGCTACAAGAAAAATATTAATAATCATAT  250

seq1  TTTAATGCAACAGGAAGATGTCTATCAATAGCTACCATGGGAAATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCAACAGGAAGATGTCTATCAATAGCTACCATGGGAAATACAAT  300

seq1  GTTTTACCGATTCTAACAAATGAAATAGTATAAAGAAAACTTAAAATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCGATTCTAACAAATGAAATAGTATAAAGAAAACTTAAAATCCA  350

seq1  AAATAATCTCAAATTTTGCTTTAGAAACTATTTAAAATAACATTCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTCAAATTTTGCTTTAGAAACTATTTAAAATAACATTCATGCT  400

seq1  CATATCAAAGAAAATTACATTGTAGAACTTTATTAGCATATACTAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAAGAAAATTACATTGTAGAACTTTATTAGCATATACTAAATAT  450

seq1  ATCAAGTATGGGAATAATATATCAAGTGAGCTTTGTCATATTTTTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTATGGGAATAATATATCAAGTGAGCTTTGTCATATTTTTAGATA  500

seq1  TGTAGATATGGGACTATGTTTGATCATAGATATTACTGATGAGTAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATATGGGACTATGTTTGATCATAGATATTACTGATGAGTAACCAC  550

seq1  TATGACTAGGGTTAAAATTTACAGCCCCTGTGCAAACAATGAGCCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAGGGTTAAAATTTACAGCCCCTGTGCAAACAATGAGCCACAGT  600

seq1  CATTGCTTCTAAAAGGACAAGCTAGACTATAGTCAGCACTACAGTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCTAAAAGGACAAGCTAGACTATAGTCAGCACTACAGTAAAAT  650

seq1  AGTTGTAGATATACTTGACAGTATGAAAGTTCCATTTGTAAACAAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGATATACTTGACAGTATGAAAGTTCCATTTGTAAACAAGAAAT  700

seq1  CCTTCTGGATCAGAAGAACTCCTCACACAGCTTGCTATTTTCCTTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGATCAGAAGAACTCCTCACACAGCTTGCTATTTTCCTTTTGGT  750

seq1  AAACCCCACACAATGGGGTCAATATAGTCTCAGTGGGTGTTTTCAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCACACAATGGGGTCAATATAGTCTCAGTGGGTGTTTTCAAATGT  800

seq1  GTTAAAATAAAAATAAGTCACGTGGAGCTCTTTTCTGGGTGCAGAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATAAAAATAAGTCACGTGGAGCTCTTTTCTGGGTGCAGAATCTG  850

seq1  ATTCATGGCCTAAGTTTCTATATTTATTCTTAATTAAGAAACTGGGTGTG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTCATGGCCTAAGTTTCTATATTTATTCTTAATTAAG-AACTGGGTGTG  899

seq1  TGGAATATATGCTGGACACAAGCACACACACACACACACACACACACACA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGAATATATGCTGGACAC-AGCACACACACACACACACACACACACACA  948

seq1  CACATACACACACACTGAAGCTCAAGAGGAACATCTGTATCTTTCTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACTGAAGCTCAAGAGGAACATCTGTATCTTTCTCCAT  998

seq1  AACCTCCCACCTTATTTATTTGCAACAGGCTCTCAGTAAATAGTGAACTC  1050
       |||||||||||||||||||||| ||| ||||||||||||||||| ||||
seq2  -ACCTCCCACCTTATTTATTTGC-ACA-GCTCTCAGTAAATAGTG-ACTC  1044

seq1  TTTGTTTTGGTTATTCTGACTAGCCAGTGAGCTCTTAGAACCCACCTGTC  1100
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TTTGTTTTTGTTATTCTGACTAGCCAGTGAGCTCTTAGAACCCA-CTGTC  1093

seq1  TCTGCTCCCCCAACACTA-TACTCACAGGTACACTAGGAAATTTGGGAAC  1149
      |||||| ||||||||||| |||||||||||   ||| |||||||||  ||
seq2  TCTGCT-CCCCAACACTATTACTCACAGGTTACCTA-GAAATTTGG--AC  1139

seq1  TT-GCACTCAGGTTTTCTGAATTTTTATAACAAGTGCTTTTACCTACT-G  1197
      || |||| |||| |||||||  ||||||||| ||||| |||||||||| |
seq2  TTGGCAC-CAGG-TTTCTGA--TTTTATAACCAGTGC-TTTACCTACTGG  1184

seq1  AGCCAATTCCCCAGCTCTG  1216
      |||||||||||| ||||||
seq2  AGCCAATTCCCCCGCTCTG  1203

seq1: chr5_90361014_90361864
seq2: B6Ng01-292P12.g_65_917 (reverse)

seq1  CCAGTCCCCCC--TCCCCATCCTATTAAAATCTGTACGTAATATTTCTCA  48
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCCCCCTCCCCCATCCTATTAAAATCTGTACGTAATATTTCTCA  50

seq1  GCCCCCACAACTGAGAAACTGTGTGCTTTATCAGATTTCCAAGTGAATGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACAACTGAGAAACTGTGTGCTTTATCAGATTTCCAAGTGAATGT  100

seq1  CACGTAAAACCTCACTCCCGCAACACTGACAATGTGGCTTTTGATAGGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAAAACCTCACTCCCGCAACACTGACAATGTGGCTTTTGATAGGCC  150

seq1  AAGTTCACAATCTGTCTAGTCAGAAAGTGTCCAAGATAATAGTCTATCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACAATCTGTCTAGTCAGAAAGTGTCCAAGATAATAGTCTATCTG  200

seq1  CTTCACATTCTTACCACGTGCCCCATTTATTCACAGTGCCATTAAAAATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTCTTACCACGTGCCCCATTTATTCACAGTGCCATTAAAAATG  250

seq1  TTCAGTGTTCGCTCCCGAAACCAACCCTCTATTGTAGGTCCCAATGATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTTCGCTCCCGAAACCAACCCTCTATTGTAGGTCCCAATGATGG  300

seq1  GATCAATTATATGACTGCTTAAACCTCAAAGCTTCCCCTCACTAATGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTATATGACTGCTTAAACCTCAAAGCTTCCCCTCACTAATGTCC  350

seq1  TTACCAGCGGACATAAATAGGCAGGTCTTTTCTCGCTGGTTGAAGTAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGCGGACATAAATAGGCAGGTCTTTTCTCGCTGGTTGAAGTAAAC  400

seq1  GCCTATGTTGTTCAAACCAGCATACTGTACATTCCTGTGTAATTTTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTTGTTCAAACCAGCATACTGTACATTCCTGTGTAATTTTTTGT  450

seq1  GTTTGATCATTGGACAGATGGAATATCTGCTTTTCACATTGGTATCAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATCATTGGACAGATGGAATATCTGCTTTTCACATTGGTATCAATT  500

seq1  GAACGTGGGCAGTGCAAACTCTGCCCAAAGCCGACCTGTTTTGTTGGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGGGCAGTGCAAACTCTGCCCAAAGCCGACCTGTTTTGTTGGGCA  550

seq1  GAAGTCATGGCTCCCTGCCCCAAGACAACGCATTTCTTGGAAATGCTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATGGCTCCCTGCCCCAAGACAACGCATTTCTTGGAAATGCTCAT  600

seq1  AGGATCTTCAGTTTCCCTTTTTGAGGTGTACAAGGAAAATATTGCCCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTCAGTTTCCCTTTTTGAGGTGTACAAGGAAAATATTGCCCTGG  650

seq1  GGAAATATCAAAGGATTTTCTGACACTAGCCAAAGAAACAGGTGCACACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATCAAAGGATTTTCTGACACTAGCCAAAGAAACAGGTGCACACA  700

seq1  TATTTGGTGTGATAAAAATGGAATCTACGGCAGTGGCCGAGATCCAAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTGTGATAAAAATGGAATCTACGGCAGTGGCCGAGATCCAAGCA  750

seq1  CATCAATTCTCCAGCTCTGTAATTTCAGTGGTCCACTCAAAGAATTTCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTCTCCAGCTCTGTAATTTCAGTGGTCCACTCAAAGAATTTCTA  800

seq1  TGTTCCATAATCACAGTTGCCATAATAAATTTGAATGTCTTTGTCTGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATAATCACAGTTGCCATAATAAATTTGAATGTCTTTGTCTGGAA  850

seq1  TTC  851
      |||
seq2  TTC  853