BAC Information

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BAC

Clone NameB6Ng01-293G18
Chromosome5 (Build37)
Map Location 72,388,590 - 72,389,682
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G18.bB6Ng01-293G18.g
ACCGA089808GA089809
length1,1551,090
definitionB6Ng01-293G18.b B6Ng01-293G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtacccaattttttaatggggttatttgaat
ttctggagtccagcctctttagctctgtatatattggatattagtcccct
atcagatttagtattgttaaaaatccttttacaatctgttggtggccttt
ttgtcttattgacagtgtcttttgccttacagaagctttgcaattttatg
aggttccatttttcaattcttgatcttacagctgttctattcaggaattt
tccccctgtgccaatatcttcgaggcttttccccactttctcctctataa
gtttcagtgtctctggttttatgtggagctccttgatccacttagatttg
accttagtacaaggagataggaatggatcaattcgcattcttcttctaca
tgataaccaccagttgttccagcaccatttgttgaaatgctgtgtttttt
ccactggatggttttagctcccttgtcaaagatcaagggaccataggtgt
gtgaattaatttctgtgtcttcaattctattccattgatctacctgtctg
tcgctgtaccagtacaatgcaggggggtttttttgtttttgtttttttat
cacaattgctctgtagtataccttgaggtcaggcatggtgattccaccag
aggttcttttattgttgagaatagtttttgctatcctaggttttttatta
ttccagatgaattttcaaattggcctttcaaactaagtgaagaattgaat
tttgaaagaattcaaattgaattgaaagaattttgatggggattgcattg
aatctgtagattgctttcaccaggatagccattttgactatattaatcct
gccaaaccatgagcatgggagatctttgcatcttctgagaccttcttcaa
tttctttcttcagagacttgaagttcttatcatacagatctttcactttc
cttaggttagagtcgcaccaagtatttttatatatttgtgacttattgtg
aagggtgttgtttctctaatttctttctcagctcatttattccttgtgta
agagaagggcatgatttggtttgaggtattttatatttcagcttactgca
ctgaagctgtttaatcaggttagaaagttcctctgggtggaattttaagg
atttc
gaattcaggttgtctgtgtctctcttgtgccttctcagttgtttgttaaa
agaatcctgactgtgaaacacctctcagctagctttaatcagaaatagta
agaaatgaagttagtctttttaaaaacacaattttagttatgagattgta
ttgtttttcccctatccttttgcattgggccactaggtccagttatgcca
aaggaaagttataaagtgatgaaattatcagagattggagatcattgaga
tctgtgtgaaaagctgcctaacacaaagcacagtggtgaaacagaatcga
caagggaaggcttttgacatataaccagcatgctttggcttctaagaaat
aagtattcatttgctggaaatctgtggtgaaggatattgtaaggaaatgt
tatgcctgtagggacacagataaggatatgatacagttagaatcatagga
gaaattacctttctgctatgacagcttccacagagagtaacatgcaaact
gcccagagataatgagctagttatagtaaggttcatagatcaaactgaac
tacgtacattagacaaagtattaagttactttaaaacatagtgaaaagaa
atggaaaggtgtgtagccaattacattatgagactcttattcataaattc
taagacatacagtcttttcctccctccctctctttccctccctcttctct
tcctccctccctgtgcctttatccatccccttctcttctctctccatcac
tcttcttttcatacatctctattgtttatatgattataatgggcaaacct
gaactttgaatgaggtgtctcacagaagatcaatgatacgaaggaaaaga
agcaagggaaattttgtctaaccacagttagtcctgcagcaaccatgagt
tttatttattgttctcaagtcatcttgagtgtgagtcccttgggtatttg
cttatggggtggtcaagattggagagatcaccactcttggtgagtgatca
acatgctggcctcccttattctttctggtataagtgatactctggcctgt
ctagtcagacatttctatctgcttctcttgatttcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72388590_72389682
seq2: B6Ng01-293G18.g_63_1152 (reverse)

seq1  TGTGTGAAATTCAAAGAAGAAGCAGATAGAAAATGTCTGACTAGACAAGC  50
      ||||||||| ||||   |||||||||||| ||||||||||||||||| ||
seq2  TGTGTGAAA-TCAA--GAGAAGCAGATAG-AAATGTCTGACTAGACAGGC  46

seq1  CAGAGTTATCACTTATAACCAGAAAGGAATAGGGAGGCCAGCATGTTGAT  100
      ||||| |||||||||| ||||||||| |  ||||||||||||||||||||
seq2  CAGAG-TATCACTTAT-ACCAGAAAGAATAAGGGAGGCCAGCATGTTGAT  94

seq1  CACTCACCAAGAGTGGTGATCTCTCCAATCTTGACCA-CCCATAAGCAAA  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACTCACCAAGAGTGGTGATCTCTCCAATCTTGACCACCCCATAAGCAAA  144

seq1  TACC--AAGGACTCACACTCAAGATGACTTGAGAACAATAAATAAAACTC  197
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGGGACTCACACTCAAGATGACTTGAGAACAATAAATAAAACTC  194

seq1  ATGGTTGCTGCAGGACTAACTGTGGTTAGACAAAATTTCCCTTGCTTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCTGCAGGACTAACTGTGGTTAGACAAAATTTCCCTTGCTTCTT  244

seq1  TTCCTTCGTATCATTGATCTTCTGTGAGACACCTCATTCAAAGTTCAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCGTATCATTGATCTTCTGTGAGACACCTCATTCAAAGTTCAGGT  294

seq1  TTGCCCATTATAATCATATAAACAATAGAGATGTATGAAAAGAAGAGTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATTATAATCATATAAACAATAGAGATGTATGAAAAGAAGAGTGA  344

seq1  TGGAGAGAGAAGAGAAGGGGATGGATAAAGGCACAGGGAGGGAGGAAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGAAGAGAAGGGGATGGATAAAGGCACAGGGAGGGAGGAAGAG  394

seq1  AAGAGGGAGGGAAAGAGAGGGAGGGAGGAAAAGACTGTATGTCTTAGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGGGAAAGAGAGGGAGGGAGGAAAAGACTGTATGTCTTAGAAT  444

seq1  TTATGAATAAGAGTCTCATAATGTAATTGGCTACACACCTTTCCATTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATAAGAGTCTCATAATGTAATTGGCTACACACCTTTCCATTTCT  494

seq1  TTTCACTATGTTTTAAAGTAACTTAATACTTTGTCTAATGTACGTAGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATGTTTTAAAGTAACTTAATACTTTGTCTAATGTACGTAGTTC  544

seq1  AGTTTGATCTATGAACCTTACTATAACTAGCTCATTATCTCTGGGCAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATCTATGAACCTTACTATAACTAGCTCATTATCTCTGGGCAGTT  594

seq1  TGCATGTTACTCTCTGTGGAAGCTGTCATAGCAGAAAGGTAATTTCTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTACTCTCTGTGGAAGCTGTCATAGCAGAAAGGTAATTTCTCCT  644

seq1  ATGATTCTAACTGTATCATATCCTTATCTGTGTCCCTACAGGCATAACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTAACTGTATCATATCCTTATCTGTGTCCCTACAGGCATAACAT  694

seq1  TTCCTTACAATATCCTTCACCACAGATTTCCAGCAAATGAATACTTATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACAATATCCTTCACCACAGATTTCCAGCAAATGAATACTTATTT  744

seq1  CTTAGAAGCCAAAGCATGCTGGTTATATGTCAAAAGCCTTCCCTTGTCGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCCAAAGCATGCTGGTTATATGTCAAAAGCCTTCCCTTGTCGA  794

seq1  TTCTGTTTCACCACTGTGCTTTGTGTTAGGCAGCTTTTCACACAGATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCACCACTGTGCTTTGTGTTAGGCAGCTTTTCACACAGATCTC  844

seq1  AATGATCTCCAATCTCTGATAATTTCATCACTTTATAACTTTCCTTTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTCCAATCTCTGATAATTTCATCACTTTATAACTTTCCTTTGGC  894

seq1  ATAACTGGACCTAGTGGCCCAATGCAAAAGGATAGGGGAAAAACAATACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGACCTAGTGGCCCAATGCAAAAGGATAGGGGAAAAACAATACA  944

seq1  ATCTCATAACTAAAATTGTGTTTTTAAAAAGACTAACTTCATTTCTTACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAACTAAAATTGTGTTTTTAAAAAGACTAACTTCATTTCTTACT  994

seq1  ATTTCTGATTAAAGCTAGCTGAGAGGTGTTTCACAGTCAGGATTCTTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATTAAAGCTAGCTGAGAGGTGTTTCACAGTCAGGATTCTTTTA  1044

seq1  ACAAACAACTGAGAAGGCACAAGAGAGACACAGACAACCTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACTGAGAAGGCACAAGAGAGACACAGACAACCTGAATTC  1090