BAC Information

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BAC

Clone NameB6Ng01-293G24
Chromosome5 (Build37)
Map Location 14,993,958 - 15,157,867
singlet/doubletdoublet
Overlap geneSpeer4c, Speer4d
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream gene4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G24.bB6Ng01-293G24.g
ACCGA089820GA089821
length1,1681,120
definitionB6Ng01-293G24.b B6Ng01-293G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,156,703 - 15,157,867)(14,993,958 - 14,995,077)
sequence
gaattctcttacttctaacatatagtactctgtaacacacatccattcat
gatcctgtggaccagatactgagtaatataccgtcattactctaaagctg
ccgaggaaataaaaatattcacaaaggaatataaaataaatgaggaaggc
cagagccatatgcctcagttttgcttgcaatacagcatcagtgacaacca
cacagcagatataatgaccttccaagtcctactgggaaatagcttttgat
agatgctgttgtccttgaccacaaacttgctgtgtttttgctgttgctga
ttagacttatgtttaacatttatgtgaatgggtgtttttcctatgaatgt
aatactgtatgtggcttctcccgagagacatttccctcagaggacagaag
gaatcacaaccattcctggagatgattgttaggcaccatgtgggtcttct
agagagtagcagatatctaacctgtgaggcatccccacacctcctgcagt
tggcttttgtcctttcagtgcatgtcctgcattagatggacaggatcaag
tccagttgagtggagaaatctcaggagatgtctaggtacagtgcctgacc
tgcacatactcattgtcctaggctgccaggcatgtatgcagggctctgat
attaccactgctagttctgtgttcaggatattgcctcagtatcttttatt
ttcaattttagagcagatcttcacctctcatataggatgacaatgtagat
tgggcacttttgtaaaatttagaattgagattagcttcctagaagcttga
ttggcaaaaggacccctcttgatagcatgaaatgtttctattgtttcttt
ttaagtcagatatgtttttatttacatttcaagtgttatcccctttcctg
gtttcccctctgaaaacgccctatctcctcccctgtccccctgctcactg
accattccactctggcttcctagcctgggcattcccctacacagggtcaa
ggcctttccttccaattgatgaacaccaagccattcatctactacattat
gcagctggagccatgagttccacttgtactctagtgggtggtgtagtttc
tgggagctctggggggtactggctagttcatattgcctgttcttctatgg
ggctgcaaccaatgcagc
gaattcctgatctttccaagacttttttcattaatgggtgttggatcttg
tcaaatgctttttccacatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaaaaaaacctatttggtcaggacggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
ctcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtgggtgggccattttcttaa
ttgatgtgataagtcaaggcatagctcaacctgggcacttacatcttggg
tggctgggcctgaataaaaaataaaaaacaaaacaaaaacaaagaaaaca
aaaaacaaaaaattatctgagaactatccaactaagaggaacctctcgcg
ggtctctttttcagttcctgccacataaattctttcctgtgccaatatgc
tttgggtcagtgtcttagcagaacaagagagacagagggcatcactaaga
aatctcagctccatgaaaacacacctaaggtcactaagcctcagcatctg
ctcttcccagttaagctgccttgaataaaactttcttactcctctccttt
agtcgtcagaatgcgctggagttttagtcatagcatcatgataacaacct
tacagagaaagagaattttgaaattatttctattttgttctgctggtttc
gtttggtttgagacaatgtctcacactataacctaagctggagctcattg
tacagctaaagccgacctcaaactgacagaaatcttcacaccacagcctc
ccaactgcttagattataggtgtgaatccatacctggtgatcaatctgtt
tcatactatttgattctgtttatccattctttcactatctataaattcaa
ctctgctcatggcataagagactgattctgcttttatagaaaaagccctt
accaactcaaagtgtaaaatgaaaccaccttaagattctttaacctgacc
tagctattaattatccgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15156703_15157867
seq2: B6Ng01-293G24.b_47_1214 (reverse)

seq1  GCTGACATTGTTTGCAGCCCCATAGAAGGAACA-GCAATATGAATTAGCC  49
      |||| ||||| |||||||||||||||| ||||| |||||||||| |||||
seq2  GCTG-CATTGGTTGCAGCCCCATAGAA-GAACAGGCAATATGAACTAGCC  48

seq1  AGTA-CCCCCAGAGCTCCCAGAAACTACACCACCAACTAGAGTAC-AGTG  97
      |||| ||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AGTACCCCCCAGAGCTCCCAGAAACTACACCACCCACTAGAGTACAAGTG  98

seq1  GAACTCATGGCTCCAGCTGCAT-ATGTAGTAGATG-ATGGCTTTGTTGTT  145
      |||||||||||||||||||||| |||||||||||| ||||| ||| ||||
seq2  GAACTCATGGCTCCAGCTGCATAATGTAGTAGATGAATGGC-TTGGTGTT  147

seq1  CATCAA-TGGGAGGAAAGGCCTTGACCCTGTGTAGGGGAATGCCCAGGCT  194
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTGGAAGGAAAGGCCTTGACCCTGTGTAGGGGAATGCCCAGGCT  197

seq1  AGGAAGCCAGAGTGGAATGGTTGGTGAGCAGGGGGACAGGGGAGGAGATA  244
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AGGAAGCCAGAGTGGAATGGTCAGTGAGCAGGGGGACAGGGGAGGAGATA  247

seq1  GGGCATTTTCAGAGGGGAAACCAGGAAAGGGGATAACACTTGAAATGTAA  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTTTTCAGAGGGGAAACCAGGAAAGGGGATAACACTTGAAATGTAA  297

seq1  ATAAAAACATATCTGACTTAAAAAGAAACAATAGAAACATTTCATGCTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACATATCTGACTTAAAAAGAAACAATAGAAACATTTCATGCTAT  347

seq1  CAAGAGGGGTCCTTTTCCCAATCAAGCTTCTAGGAAGCTAATCTCAATTC  394
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAGAGGGGTCCTTTTGCCAATCAAGCTTCTAGGAAGCTAATCTCAATTC  397

seq1  TAAATTTTACAAAAGTGCCCAATCTACATTGTCATCCTATATGAGAGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTACAAAAGTGCCCAATCTACATTGTCATCCTATATGAGAGGTG  447

seq1  AAGATCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGCTCTAAAATTGAAAATAAAAGATACTGAGGCAATATCCTGAA  497

seq1  CACAGAACTAGCAGTGGTAATATCAGAGCCCTGCATACATGCCTGGCAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACTAGCAGTGGTAATATCAGAGCCCTGCATACATGCCTGGCAGC  547

seq1  CTAGGACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAATGAGTATGTGCAGGTCAGGCACTGTACCTAGACATCTCCTG  597

seq1  AGATTTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTCCACTCAACTGGACTTGATCCTGTCCATCTAATGCAGGACAT  647

seq1  GCACTGAAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCACAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAAAGGACAAAAGCCAACTGCAGGAGGTGTGGGGATGCCTCACAG  697

seq1  GTTAGATATCTGCTACTCTCTAGAAGACCCACATGGCGCCTAACAATCAT  744
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTAGATATCTGCTACTCTCTAGAAGACCCACATGGTGCCTAACAATCAT  747

seq1  CTCCAGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAATGGTTGTGATTCCTTCTGTCCTCTGAGGGAAATGTCTCTCG  797

seq1  GGAGGAGCCACATACAGTATTACATTCATAGGAAAAACACCCATTCACAT  844
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCCACATACAGTATTACATTCATAGGAAAAACACCCATTCACAT  847

seq1  AAATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACATAGCAAGTTTA  894
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AAATGTTAAACATAAGTCTAATCAGCAACAGCAAAAACACAGCAAGTTTG  897

seq1  TGGTCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGACAACAGCATCTATCAAAAGCTATTTCCCAGTAGGACTTGG  947

seq1  AAGGTCATTATATCTGCTGTGTGGTTGTCACTGATGCTGTATTGCAAGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTATATCTGCTGTGTGGTTGTCACTGATGCTGTATTGCAAGCA  997

seq1  AAACTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATATTCCTTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGCATATGGCTCTGGCCTTCCTCATTTATTTTATATTCCTTTG  1047

seq1  TGAATATTTTTATTTCCTCGGCAGCTTTCGAGTAATGACAGTATATTACT  1094
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TGAATATTTTTATTTCCTCGGCAGCTTTAGAGTAATGACGGTATATTACT  1097

seq1  CAGTATCTGGTCCACAGGATCATGAATGGATGTGTGTTACAGAGTACTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTGGTCCACAGGATCATGAATGGATGTGTGTTACAGAGTACTAT  1147

seq1  ATGTTAGAAGTAAGAGAATTC  1165
      |||||||||||||||||||||
seq2  ATGTTAGAAGTAAGAGAATTC  1168

seq1: chr5_14993958_14995077
seq2: B6Ng01-293G24.g_66_1185

seq1  GAATTCCTGATCTTTCCAAGACTTTTTTCATTAATGGGTGTTGGATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTTTCATTAATGGGTGTTGGATCTTG  50

seq1  TCAAATGCTTTTTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTTTTTCCACATCTAACGAGATGATCATGTGGTTTTTGTCTTT  100

seq1  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACC  150

seq1  ATCCCTGCATCCCTGGAATAAAACCTATTTGGTCAGGACGGATGATTGCT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCCCTGCATCCCTGGAAAAAAACCTATTTGGTCAGGACGGATGATTGCT  200

seq1  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGC  250

seq1  CTCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGAT  300

seq1  CTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGGTGGGCCATTTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGGTGGGCCATTTTCTTAA  350

seq1  TTGATGTGATAAGTCAAGGCATAGCTCAACCTGGGCACTTACATCTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGATAAGTCAAGGCATAGCTCAACCTGGGCACTTACATCTTGGG  400

seq1  TGGCTGGGCCTGAATAAAAAATAAAAAACAAAACAAAAACAAAGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCCTGAATAAAAAATAAAAAACAAAACAAAAACAAAGAAAACA  450

seq1  AAAAACAAAAAATTATCTGAGAACTATCCAACTAAGAGGAACCTCTCGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAATTATCTGAGAACTATCCAACTAAGAGGAACCTCTCGCG  500

seq1  GGTCTCTTTTTCAGTTCCTGCCACATAAATTCTTTCCTGTGCCAATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTTTTCAGTTCCTGCCACATAAATTCTTTCCTGTGCCAATATGC  550

seq1  TTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGAGGGCATCACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCAGTGTCTTAGCAGAACAAGAGAGACAGAGGGCATCACTAAGA  600

seq1  AATCTCAGCTCCATGAAAACACACCTAAGGTCACTAAGCCTCAGCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCTCCATGAAAACACACCTAAGGTCACTAAGCCTCAGCATCTG  650

seq1  CTCTTCCCAGTTAAGCTGCCTTGAATAAAACTTTCTTACTCCTCTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAGTTAAGCTGCCTTGAATAAAACTTTCTTACTCCTCTCCTTT  700

seq1  AGTCGTCAGAATGCGCTGGAGTTTTAGTCATAGCATCATGATAACAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCAGAATGCGCTGGAGTTTTAGTCATAGCATCATGATAACAACCT  750

seq1  TACAGAGAAAGAGAATTTTGAAATTATTTCTATTTTGTTCTGCTGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAAGAGAATTTTGAAATTATTTCTATTTTGTTCTGCTGGTTTC  800

seq1  GTTTGGTTTGAGACAATGTCTCACACTATAACCTAAGCTGGAGCTCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGAGACAATGTCTCACACTATAACCTAAGCTGGAGCTCATTG  850

seq1  TACAGCTAAAGCCGACCTCAAACTGACAGCAATCTTCACACCACAGCCTC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACAGCTAAAGCCGACCTCAAACTGACAGAAATCTTCACACCACAGCCTC  900

seq1  CCAACTGCTTAGATTATAGGTGTGAATCCATACCTGGTGATCAATCTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCTTAGATTATAGGTGTGAATCCATACCTGGTGATCAATCTGTT  950

seq1  TCATACTATTTGATTCTGTTTTATCCATTCTTTCACTATCTATAAAATTC  1000
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TCATACTATTTGATTCTG-TTTATCCATTCTTTCACTATCTAT-AAATTC  998

seq1  AACTCCTGCTCATGCCATAAGAAGACTGATCTTGC-TTTATAG-AAAAGC  1048
      |||| ||||||||| |||||| ||||||||  ||| ||||||| ||||||
seq2  AACT-CTGCTCATGGCATAAG-AGACTGATTCTGCTTTTATAGAAAAAGC  1046

seq1  CTTACCCAACTCAAAAGTGTAAAATGAAACCAAC-TAAGA-TCTTTAAAC  1096
      | |  ||||||| ||||||||||||||||||| | ||||| ||||||| |
seq2  CCTTACCAACTC-AAAGTGTAAAATGAAACCACCTTAAGATTCTTTAACC  1095

seq1  TGAACTAGCTA-TAATTATCTGTTT  1120
      ||| ||||||| |||||||| ||||
seq2  TGACCTAGCTATTAATTATCCGTTT  1120