BAC Information

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BAC

Clone NameB6Ng01-293I20
Chromosome5 (Build37)
Map Location 25,175,779 - 25,176,898
singlet/doubletsinglet
Overlap genenone
Upstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
Downstream geneXrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293I20.bB6Ng01-293I20.g
ACCGA089904GA089905
length7441,129
definitionB6Ng01-293I20.b B6Ng01-293I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattaaattcttaggcaaatggatggaactagataatatcatcct
gagttaggtaaccaaatcacaaaagaacacacatggtatgtactcactga
taagtggatattagcccagaagctcagaatacccaagatacaattcacag
accacatgaaactcaagaagaaggaagaccacagtgtggatacttcagtc
cttcctagaagtaggaacaaaatacccataggaggagatagagggacaaa
gtgtggagcagaaactgagggaaaggccatccagagactggcccacctcg
ggatccatcccatatacagttaccaaacccaaacttgttgtgaatgccaa
caagtacttgctgacagaagtctgatatagctgtctcctgagagactttg
ccagtgcctgacaaatacagaggtggatactcacagccaaccattgagca
cagggtatccaatgaaggagctagagaaaggaccaaaggagctgaagggg
ttttgcagccccataggaggaacaacaatatgaacaaaccagtaaccccc
cccatacagctcccgggaactaaaccaccaaccaaagagtacatatggta
ggacccatggctccagctgcatatgtagcagaggatggctttgttgaaca
tcaaggagaagagaggcccttggtcctatgaagattatatgccccagtgt
aggggaatgccagggccaggaagtgggagtgggtgggtttggtc

gaattcagatcctagaactcttattaaaaagctgggcaaggtagtgtgcg
attataattccagcattggaggcagagatagaggatgtctctctagccag
gcagcccaggctaaatagtgagtccaagcgagagaccctgcttttctctt
agggaaaacatatacacaaatgagttcttgcctccaccacacacaggtgc
acctcaccacaggaacacacacacacacacacacacacacacacacacac
acacacagaggtgtggggagaggaatgttggacatgcttaaaggggttca
ttcttcctacctagagggcaacttcaaaactcaacattttaaatcctggc
acagcactcctcgacgtttaactgaagacaagtgttacaaaaattccttc
ccaggtcccccatacctccccaaaattcattctgggcaaccaatgaattc
actcggcttcctaatgaagcataggtggagggtcatttctgggtgtctgt
gagtcacactgcagtctttacccagcagggatgagggcttccccatagca
catagagcccctgtgctggtctttctaacctatacactctagccctttcc
tgaggtcaattgtgttttcttgattgagacagggtcttatcatgtagtag
cgcgtgatggcttggaactaactctgtagaccaggcttgcctcaagctca
gagatctgcctgcttctgtctccggaacactgtgattaaaggtgcgcacc
accctaccaagccgtatgatgtggcttttcaacatctgagagaacactgc
ctacttcatgtggccaagtgttctccataacatggtgtgtttaggtttag
ctctcacatgtaggatctgaattaccttttacatttgcaaacttcagaaa
ggagaacgtttctttgctgcagaaatgcagtgaagtattccaaagggccc
tgggaaccccttgtctgtgaagttgaggataaaaaagcgaatgccttact
ggtttgactagtttctttttttatttttaataatggatggagcacgtgtg
taatgtacaccatgtgtaccagtgcctggcagagtcagaagagggcgttg
agctccttgagcttggagttacaggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_25175779_25176898
seq2: B6Ng01-293I20.g_67_1195

seq1  GAATTCAGATCCTAGAACTCTTATTAAAAAGCTGGGCAAGGTAGTGTGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTAGAACTCTTATTAAAAAGCTGGGCAAGGTAGTGTGCG  50

seq1  ATTATAATTCCAGCATTGGAGGCAGAGATAGAGGATGTCTCTCTAGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTCCAGCATTGGAGGCAGAGATAGAGGATGTCTCTCTAGCCAG  100

seq1  GCAGCCCAGGCTAAATAGTGAGTCCAAGCGAGAGACCCTGCTTTTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCAGGCTAAATAGTGAGTCCAAGCGAGAGACCCTGCTTTTCTCTT  150

seq1  AGGGAAAACATATACACAAATGAGTTCTTGCCTCCACCACACACAGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACATATACACAAATGAGTTCTTGCCTCCACCACACACAGGTGC  200

seq1  ACCTCACCACAGGAACACACACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCACAGGAACACACACACACACACACACACACACACACACACAC  250

seq1  ACACACAGAGGTGTGGGGAGAGGAATGTTGGACATGCTTAAAGGGGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGGTGTGGGGAGAGGAATGTTGGACATGCTTAAAGGGGTTCA  300

seq1  TTCTTCCTACCTAGAGGGCAACTTCAAAACTCAACATTTTAAATCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTACCTAGAGGGCAACTTCAAAACTCAACATTTTAAATCCTGGC  350

seq1  ACAGCACTCCTCGACGTTTAACTGAAGACAAGTGTTACAAAAATTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTCCTCGACGTTTAACTGAAGACAAGTGTTACAAAAATTCCTTC  400

seq1  CCAGGTCCCCCATACCTCCCCAAAATTCATTCTGGGCAACCAATGAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCCCCATACCTCCCCAAAATTCATTCTGGGCAACCAATGAATTC  450

seq1  ACTCGGCTTCCTAATGAAGCATAGGTGGAGGGTCATTTCTGGGTGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCTTCCTAATGAAGCATAGGTGGAGGGTCATTTCTGGGTGTCTGT  500

seq1  GAGTCACACTGCAGTCTTTACCCAGCAGGGATGAGGGCTTCCCCATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACACTGCAGTCTTTACCCAGCAGGGATGAGGGCTTCCCCATAGCA  550

seq1  CATAGAGCCCCTGTGCTGGTCTTTCTAACCTATACACTCTAGCCCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGCCCCTGTGCTGGTCTTTCTAACCTATACACTCTAGCCCTTTCC  600

seq1  TGAGGTCAATTGTGTTTTCTTGATTGAGACAGGGTCTTATCATGTAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAATTGTGTTTTCTTGATTGAGACAGGGTCTTATCATGTAGTAG  650

seq1  CGCGTGATGGCTTGGAACTAACTCTGTAGACCAGGCTTGCCTCAAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGATGGCTTGGAACTAACTCTGTAGACCAGGCTTGCCTCAAGCTCA  700

seq1  GAGATCTGCCTGCTTCTGTCTCCGGAACACTGTGATTAAAGGTGCGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTGCTTCTGTCTCCGGAACACTGTGATTAAAGGTGCGCACC  750

seq1  ACCCTACCAAGCCGTATGATGTGGCTTTTCAACATCTGAGAGAACACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACCAAGCCGTATGATGTGGCTTTTCAACATCTGAGAGAACACTGC  800

seq1  CTACTTCATGTGGCCAAGTGTTCTCCATAACATGGTGTGTTTAGGTTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATGTGGCCAAGTGTTCTCCATAACATGGTGTGTTTAGGTTTAG  850

seq1  CTCTCACATGTAGGATCTGAATTACC-TTTACATTTGCAAACTTCAGAAA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCTCACATGTAGGATCTGAATTACCTTTTACATTTGCAAACTTCAGAAA  900

seq1  GGAGAACGTTTC-TTGCTGCAGAAATGCAGTGAAGTATTCCAAA-GGCCC  947
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GGAGAACGTTTCTTTGCTGCAGAAATGCAGTGAAGTATTCCAAAGGGCCC  950

seq1  TGGGAA-CCCTTGTCTGTGAAG-TGAGGATAAAAAAGCG-ATG-CTTACT  993
      |||||| ||||||||||||||| |||||||||||||||| ||| ||||||
seq2  TGGGAACCCCTTGTCTGTGAAGTTGAGGATAAAAAAGCGAATGCCTTACT  1000

seq1  GGTTTGACTAGTTTC-TTTTTTATTTTTAATTATGGAT-GAGCACGTGTG  1041
      ||||||||||||||| ||||||||||||||| |||||| |||||||||||
seq2  GGTTTGACTAGTTTCTTTTTTTATTTTTAATAATGGATGGAGCACGTGTG  1050

seq1  GTATGTACA-CATGTGTACAGGTG-CTGGCAGAGGCCAGAAGAGGGCGTT  1089
        ||||||| |||||||||  ||| |||||||| | ||||||||||||||
seq2  TAATGTACACCATGTGTACCAGTGCCTGGCAGA-GTCAGAAGAGGGCGTT  1099

seq1  GGAGCTCCTGGAGC-TGGAGTTAACAGGTGGC  1120
       |||||||| |||| ||||||| |||||||||
seq2  -GAGCTCCTTGAGCTTGGAGTT-ACAGGTGGC  1129


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