BAC Information

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BAC

Clone NameB6Ng01-293K01
Chromosome5 (Build37)
Map Location 11,191,716 - 11,305,428
singlet/doubletdoublet
Overlap geneLOC100042819, LOC667942, LOC667948, EG667949
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728
Downstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293K01.bB6Ng01-293K01.g
ACCGA089962GA089963
length1,2011,102
definitionB6Ng01-293K01.b B6Ng01-293K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,191,716 - 11,192,921)(11,304,325 - 11,305,428)
sequence
gaattctccaagacttttaatgaagacctaataccaatagtcctctaaat
actcaactaaatagaaacagaatgatcatggtcaaactccttctctgagg
ccacaagcaacctggtaattaaatcacacaaacacacaacatggaaaggg
aatcagagaagaagttccatcatgaaaattcaaatatcacacacagaatc
caagaacacatcaaagacaccatctaggatgttcaagtacgcttcatttc
agggattcaggtgttgatagatagcaaagcccatcaactcaatccaccaa
aatagaaaaaataaataaaataaaaataagtaaaaaaattatcatctttt
ggatgctgaaaaaccctacacaacttcttgttaaaagtcctccagaatag
aaggatacaagatacatccctaaacataataaaagcaataaataacccaa
aatgtactgcattcttcacagagtgctccaaaagaacatagctatgggct
ctcttctgccccagcacataaagccagctcaaacagtgctgcagacacac
atgatccttggactcctgggcaatcctaattgcctcctgcagggtgagct
ctgccttttaatagtgacagaagaggcagtgcagggcggccaggttgaga
gcagcatatctcaggctcccaccataaccttcttccccattacttttgtc
ctctggtccagtgagaatcaggtggtcaaaataatgcaggaggctgtgtt
ttgagctgaaaaagttttgaacacggaggttttgctgggaaaaaggccaa
cagactgatggatgccctaaaggactctgacctcctgcactggaaacaca
gcttgttggaacttatcgatatccgcattgcacagaaaacggccatctgg
aggctgtacggccgcagcaccatggcactgcatcaagcccagatgttgct
agcatgaacagcctggagtcgctgaatgcgggcgagcatcagatatactg
agtcctttgccttcgcttcttctgccatcttgcagagttccatgcagaac
aagaactgtttcgtgctgctgtgagtattaagcactttgaagacgatttc
caccacagtcagcacgccagatggatgcttgtgggatcaaaaatacagtt
ggaccagatcactgcatggaaggcaattcatttgggcgctgaattcactt
g
gaattctggacaaaaattacaaaggatctgtagatatagattagcaaata
tgtgtgtgcttgtttttattttggattagcttatgagtttttgagtgtgt
tatacttttgtaataacaaaaattaactcaatgctatataaacagaaact
gtactttttaagcatatagatatataaaagtacacttaaagaggattatg
catagggcaaaggaattatatattatcagtctagtatatcatgatggctt
tatgtccattgtaaaccactgacttaactatgtctggccaaatatgggta
ggtacctttccagataatttcttcccacatgcatcctgacagttgccagt
tagtttttgaatatgactcatcaaaaatctaaaagaatatatatttcatt
caattatctccagaggctcaggcagtgttaaagctaaaatagctcttgat
gtttaaaacaatgaaataatgatggctattttgtttgtttgtcaatgtgt
ttatttttttttttctgccttgattctcgagtttatcattatatcatatt
ttcaacaaaatagtatttttgtgccttgctcatttggtctgaaaattaaa
gaataaatgtctcctgcactcctaaagtcatgtggaatataagcattctc
actcttccatagaaaaagaaacagcttgtggcttagtatgccaagacaat
gacttagaacattagccatgtacttgtctcagccaatgtagcaaaaccag
cacagtgagaatgagaagttactctcctcattctatttttcagaacttta
tcgttgaacgtatcagtccacacttaacatgattattatataaactccaa
gtgagtgtcaaaaccactgagagcatggaacaaggcaatagctccatgca
aatgttgctttagaatatatcagctataggagccctcttattcaaatagg
acatcatagttgcctaatgaaagaagttgtgttgtattttattatcagta
gagttcatgattatgaggggttataagtaaaattttcattctgataagtt
ggtagattcacattttctctttcaacctagtgcttactctaatttggtac
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11191716_11192921
seq2: B6Ng01-293K01.b_46_1246

seq1  GAATTCTCCAAGACTTTTAATGAAGACCTAATACCAATAGTCCTCTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGACTTTTAATGAAGACCTAATACCAATAGTCCTCTAAAT  50

seq1  ACTCAACTAAATAGAAACAGAATGATCATGGTCAAACTCCTTCTCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTAAATAGAAACAGAATGATCATGGTCAAACTCCTTCTCTGAGG  100

seq1  CCACAAGCAACCTGGTAATTAAATCACACAAACACACAACATGGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCAACCTGGTAATTAAATCACACAAACACACAACATGGAAAGGG  150

seq1  AATCAGAGAAGAAGTTCCATCATGAAAATTCAAATATCACACACAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGAAGAAGTTCCATCATGAAAATTCAAATATCACACACAGAATC  200

seq1  CAAGAACACATCAAAGACACCATCTAGGATGTTCAAGTACGCTTCATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACACATCAAAGACACCATCTAGGATGTTCAAGTACGCTTCATTTC  250

seq1  AGGGATTCAGGTGTTGATAGATAGCAAAGCCCATCAACTCAATCCACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCAGGTGTTGATAGATAGCAAAGCCCATCAACTCAATCCACCAA  300

seq1  AATAGAAAAAATAAATAAAATAAAAATAAGTAAAAAAATTATCATCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAAATAAATAAAATAAAAATAAGTAAAAAAATTATCATCTTTT  350

seq1  GGATGCTGAAAAACCCTACACAACTTCTTGTTAAAAGTCCTCCAGAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGAAAAACCCTACACAACTTCTTGTTAAAAGTCCTCCAGAATAG  400

seq1  AAGGATACAAGATACATCCCTAAACATAATAAAAGCAATAAATAACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACAAGATACATCCCTAAACATAATAAAAGCAATAAATAACCCAA  450

seq1  AATGTACTGCATTCTTCACAGAGTGCTCCAAAAGAACATAGCTATGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTGCATTCTTCACAGAGTGCTCCAAAAGAACATAGCTATGGGCT  500

seq1  CTCTTCTGCCCCAGCACATAAAGCCAGCTCAAACAGTGCTGCAGACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCCCCAGCACATAAAGCCAGCTCAAACAGTGCTGCAGACACAC  550

seq1  ATGATCCTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTTGGACTCCTGGGCAATCCTAATTGCCTCCTGCAGGGTGAGCT  600

seq1  CTGCCTTTTAATAGTGACAGAAGAGGCAGTGCAGGGCGGCCAGGTTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTAATAGTGACAGAAGAGGCAGTGCAGGGCGGCCAGGTTGAGA  650

seq1  GCAGCATATCTCAGGCTCCCACCATAACCTTCTTCCCCATTACTTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATATCTCAGGCTCCCACCATAACCTTCTTCCCCATTACTTTTGTC  700

seq1  CTCTGGTCCAGTGAGAATCAGGTGGTCAAAATAATGCAGGAGGCTGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCAGTGAGAATCAGGTGGTCAAAATAATGCAGGAGGCTGTGTT  750

seq1  TTGAGCTGAAAAAGTTTTGAACACGGAGGTTTTGCTGGGAAAAAGGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGAAAAAGTTTTGAACACGGAGGTTTTGCTGGGAAAAAGGCCAA  800

seq1  CAGACTGATGGATGCCCTAAAGGACTCTGACCTCCTGCACTGGAAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGATGGATGCCCTAAAGGACTCTGACCTCCTGCACTGGAAACACA  850

seq1  GCTTGTTGGAACTTATCGATATCCGCATTGCACAGAAAACGGCCATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGGAACTTATCGATATCCGCATTGCACAGAAAACGGCCATCTGG  900

seq1  AGGCTGTACGGCCGCAGCACCATGGCACTGCATCAAGCCCAGATGTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTACGGCCGCAGCACCATGGCACTGCATCAAGCCCAGATGTTGCT  950

seq1  AAGCATGAACAGCCTGGAGTCGCTGAATGCGGGCGAGCATCAGAATAATA  1000
       |||||||||||||||||||||||||||||||||||||||||||   |||
seq2  -AGCATGAACAGCCTGGAGTCGCTGAATGCGGGCGAGCATCAGA--TATA  997

seq1  CTGAGTCCTTTGCCTTCGCT--CTCTGCCATCTTGCAGAGTTCCATGCAG  1048
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  CTGAGTCCTTTGCCTTCGCTTCTTCTGCCATCTTGCAGAGTTCCATGCAG  1047

seq1  AAC-AGAACTGTTTCGTGGCTGCTGGTGAAGTATTAAAGCACTTGAAAGA  1097
      ||| ||||||||||||| |||||| ||| |||||| ||||||||  ||||
seq2  AACAAGAACTGTTTCGT-GCTGCT-GTG-AGTATT-AAGCACTTTGAAGA  1093

seq1  CCGATTTCCACCCAACAGTCAGCACGCCCAGAAATGGATGC-TGTGGGAT  1146
       |||||||||||  ||||||||||||||   | |||||||| ||||||||
seq2  -CGATTTCCACC--ACAGTCAGCACGCC---AGATGGATGCTTGTGGGAT  1137

seq1  CAAAAAATACAGTTTGA-CAGAGCACTGAAT-GAAGGCAAATTCATTTG-  1193
      | |||||||||||| || |||| ||||| || |||||| |||||||||| 
seq2  C-AAAAATACAGTTGGACCAGATCACTGCATGGAAGGC-AATTCATTTGG  1185

seq1  --GCTG-ATTCACTTG  1206
        |||| |||||||||
seq2  GCGCTGAATTCACTTG  1201

seq1: chr5_11304325_11305428
seq2: B6Ng01-293K01.g_64_1165 (reverse)

seq1  GTGTA-CAAAATAGAGTTAGCACTAGGTTTTGGAAGAGAAAATTGTTGAA  49
      ||||| |||| |||||| |||||||||  ||| ||||||||| |||   |
seq2  GTGTACCAAATTAGAGTAAGCACTAGG--TTGAAAGAGAAAA-TGT--GA  45

seq1  ATCTACCCAACTTTATCAGAATTGAAATTTTTACTTATAACCCCTCATAA  99
      ||||| ||||| ||||||||| ||||| ||||||||||||||||||||||
seq2  ATCTA-CCAAC-TTATCAGAA-TGAAAATTTTACTTATAACCCCTCATAA  92

seq1  TCATGAACTCTTACTGATA--TAAATAC-ACAC-ACTTCTTTCATTAGGC  145
      |||||||||| ||||||||   |||||| |||| ||||||||||||||||
seq2  TCATGAACTC-TACTGATAATAAAATACAACACAACTTCTTTCATTAGGC  141

seq1  AACTATGATGTCCTATTTGAATAAGA-GGCTCCTATAGCTGATATATTCT  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTATGATGTCCTATTTGAATAAGAGGGCTCCTATAGCTGATATATTCT  191

seq1  -AAGCAACATTTGCATGGAGCTATTGCCTTGTTCCATGCTCTCAGTGGTT  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACATTTGCATGGAGCTATTGCCTTGTTCCATGCTCTCAGTGGTT  241

seq1  TTGACACTCACTTGGAGTTTATATAATAATCATGTTAAGTGTGGACTGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTCACTTGGAGTTTATATAATAATCATGTTAAGTGTGGACTGAT  291

seq1  ACGTTCAACGATAAAGTTCTGAAAAATAGAATGAGGAGAGTAACTTCTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCAACGATAAAGTTCTGAAAAATAGAATGAGGAGAGTAACTTCTCA  341

seq1  TTCTCACTGTGCTGGTTTTGCTACATTGGCTGAGACAAGTACATGGCTAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGTGCTGGTTTTGCTACATTGGCTGAGACAAGTACATGGCTAA  391

seq1  TGTTCTAAGTCATTGTCTTGGCATACTAAGCCACAAGCTGTTTCTTTTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTCATTGTCTTGGCATACTAAGCCACAAGCTGTTTCTTTTTC  441

seq1  TATGGAAGAGTGAGAATGCTTATATTCCACATGACTTTAGGAGTGCAGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGAGTGAGAATGCTTATATTCCACATGACTTTAGGAGTGCAGGA  491

seq1  GACATTTATTCTTTAATTTTCAGACCAAATGAGCAAGGCACAAAAATACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATTCTTTAATTTTCAGACCAAATGAGCAAGGCACAAAAATACT  541

seq1  ATTTTGTTGAAAATATGATATAATGATAAACTCGAGAATCAAGGCAGAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGAAAATATGATATAATGATAAACTCGAGAATCAAGGCAGAAA  591

seq1  AAAAAAAATAAACACATTGACAAACAAACAAAATAGCCATCATTATTTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAAACACATTGACAAACAAACAAAATAGCCATCATTATTTCA  641

seq1  TTGTTTTAAACATCAAGAGCTATTTTAGCTTTAACACTGCCTGAGCCTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAACATCAAGAGCTATTTTAGCTTTAACACTGCCTGAGCCTCT  691

seq1  GGAGATAATTGAATGAAATATATATTCTTTTAGATTTTTGATGAGTCATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAATTGAATGAAATATATATTCTTTTAGATTTTTGATGAGTCATA  741

seq1  TTCAAAAACTAACTGGCAACTGTCAGGATGCATGTGGGAAGAAATTATCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACTAACTGGCAACTGTCAGGATGCATGTGGGAAGAAATTATCT  791

seq1  GGAAAGGTACCTACCCATATTTGGCCAGACATAGTTAAGTCAGTGGTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTACCTACCCATATTTGGCCAGACATAGTTAAGTCAGTGGTTTA  841

seq1  CAATGGACATAAAGCCATCATGATATACTAGACTGATAATATATAATTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACATAAAGCCATCATGATATACTAGACTGATAATATATAATTCC  891

seq1  TTTGCCCTATGCATAATCCTCTTTAAGTGTACTTTTATATATCTATATGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTATGCATAATCCTCTTTAAGTGTACTTTTATATATCTATATGC  941

seq1  TTAAAAAGTACAGTTTCTGTTTATATAGCATTGAGTTAATTTTTGTTATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTACAGTTTCTGTTTATATAGCATTGAGTTAATTTTTGTTATT  991

seq1  ACAAAAGTATAACACACTCAAAAACTCATAAGCTAATCCAAAATAAAAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTATAACACACTCAAAAACTCATAAGCTAATCCAAAATAAAAAC  1041

seq1  AAGCACACACATATTTGCTAATCTATATCTACAGATCCTTTGTAATTTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACACATATTTGCTAATCTATATCTACAGATCCTTTGTAATTTTT  1091

seq1  GTCCAGAATTC  1104
      |||||||||||
seq2  GTCCAGAATTC  1102