BAC Information

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BAC

Clone NameB6Ng01-294D02
Chromosome5 (Build37)
Map Location 14,133,703 - 14,134,838
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294D02.bB6Ng01-294D02.g
ACCGA090383GA090384
length1,1391,168
definitionB6Ng01-294D02.b B6Ng01-294D02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatacattgcctatttgtatacatatgtcactgtattgtttta
aaaggaaaatagaaaacaagtacatgtcttccatcagtgatctgaatatt
ctataataactttctgtagtttatatgtatttctatttttaataagtgtt
gaagctattagatatcactacagaattttcaaacaaagtatgttttagtg
gattctcctctccctttaatattcttccacgttgctttttaatcctgtta
acgtccctcctccagtgtcctttctactttcatgtcacatgtcaattgtc
acatgtcacacattgtttccccactttcgtagtacttcctctcaccctct
cttggtctatttctacttcttttgcttttacaatttacatgaaattatag
acacacacacacacacatttcaaatgtaggattcacgtatgagagagaat
atgtagtttatgtgtttctgagctttagggacaatgattaatgttatata
tttcaaactcacctatttgcctgaaagtgtcataatttcattttatttag
agctgattagagtttatgtctctctagctacattttttcatctttattaa
tctgttggtgcatatctatgctgtttatatttaaactatagtaatgaaca
tggatttgcaattctcgctgtggtagagtatggatttctttgggtatgtg
ccaaggagtagtatggttactttagaatcatagttatatttttaattttt
tgagaaacctcagattttcttaatgtttctattagtttaaactgctacta
accataaacaagggttcttttctaccccagacactcaacagagtctgttg
ccaaatgtctttgtggtagccattctgattgtgattgtttggtactttga
ggtaattagtttttatgtgcagaaatattgaacaccattgagaatatcat
tgcccatttatctcttccccttaagccttcaattctgtcctcacaatgcc
tgctgctttggtttccttccattcttctatgtttgctcattaaaagaacc
atctcaacatttctcattctctatgccttcgtttctgatttatgttatgc
acattccgaagcaattcaatgacttttaaaggaggtctg
gaattcttcgacatgcaaccattccatttaacaagcaccatttattgaag
atgatgctgtggataccttatcttgttcctgattttagtaaaattgcttt
gaatttcacttcattgaagttggtggtctttattgtatttaggcatgtcc
cttatgtgcctaatatttccaggatttttgtcatgaaggggtggtggatt
tttcacagacaatttctgcttgtaataaaatttttttttctttattgttt
agtttatttacacggtaattacatttattgattttttttttcatattgaa
ccaccccatgcagttccagttgtacatgcagctggtaggatttactgaag
gaagcagagggagaagtatcatgagttcaaggcaaatgaggcctttattt
aacctttctatctctttgagcccttgacttaaaaccatcatactttctag
tattcctttctccttttatattctacatttttctttgttcttcctgatac
tcctttctcctgttcccttctcctttctacattttctatttttcactgat
gagcttcatcctatcattatagatctacatattaattaaaaactctccaa
tttagcttcaggaaggttttatttatttatttatttatttatttatttat
tgggaggcagatagcagccacatttcttgtctaaacagtgtaagaatgct
ctctaggtcacttgctgacatttctcttctctaaaacctagagcacggcc
ttcacattctgcattgccttcattccattctctcccatgcccctactagg
atgacccattaaaggtcactaaaagtctcaaccaattttcaaatacaaac
ttacaaagtcttccactttctttcaacaaaaaacatactcaggatcataa
ataacctgatccaaagtaccaaaatcctctcatcacatataatcaaacac
taaatgcacaggccaagaaagatataaaagctacagcaaaagaccagtac
atacaatgtagacctattaaatgatacagactctcacagagactatgaag
gccagagactgttcaaagtcatgcagactcttaagagaaccaaatggcca
gtccaaggcttacttactagcaaccttcattctatagatggagaaacaga
ttttccgagtctcaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14133703_14134838
seq2: B6Ng01-294D02.b_49_1187

seq1  GAATTCACATACATTGCCTATTTGTATACATATGTCACTGTATTGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATACATTGCCTATTTGTATACATATGTCACTGTATTGTTTTA  50

seq1  AAAGGAAAATAGAAAACAAGTACATGTCTTCCATCAGTGATCTGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATAGAAAACAAGTACATGTCTTCCATCAGTGATCTGAATATT  100

seq1  CTATAATAACTTTCTGTAGTTTATATGTATTTCTATTTTTAATAAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATAACTTTCTGTAGTTTATATGTATTTCTATTTTTAATAAGTGTT  150

seq1  GAAGCTATTAGATATCACTACAGAATTTTCAAACAAAGTATGTTTTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATTAGATATCACTACAGAATTTTCAAACAAAGTATGTTTTAGTG  200

seq1  GATTCTCCTCTCCCTTTAATATTCTTCCACGTTGCTTTTTAATCCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTCTCCCTTTAATATTCTTCCACGTTGCTTTTTAATCCTGTTA  250

seq1  ACGTCCCTCCTCCAGTGTCCTTTCTACTTTCATGTCACATGTCAATTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCTCCTCCAGTGTCCTTTCTACTTTCATGTCACATGTCAATTGTC  300

seq1  ACATGTCACACATTGTTTCCCCACTTTCGTAGTACTTCCTCTCACCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCACACATTGTTTCCCCACTTTCGTAGTACTTCCTCTCACCCTCT  350

seq1  CTTGGTCTATTTCTACTTCTTTTGCTTTTACAATTTACATGAAATTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTATTTCTACTTCTTTTGCTTTTACAATTTACATGAAATTATAG  400

seq1  ACACACACACACACACATTTCAAATGTAGGATTCACGTATGAGAGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACATTTCAAATGTAGGATTCACGTATGAGAGAGAAT  450

seq1  ATGTAGTTTATGTGTTTCTGAGCTTTAGGGACAATGATTAATGTTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTTATGTGTTTCTGAGCTTTAGGGACAATGATTAATGTTATATA  500

seq1  TTTCAAACTCACCTATTTGCCTGAAAGTGTCATAATTTCATTTTATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTCACCTATTTGCCTGAAAGTGTCATAATTTCATTTTATTTAG  550

seq1  AGCTGATTAGAGTTTATGTCTCTCTAGCTACATTTTTTCATCTTTATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTAGAGTTTATGTCTCTCTAGCTACATTTTTTCATCTTTATTAA  600

seq1  TCTGTTGGTGCATATCTATGCTGTTTATATTTAAACTATAGTAATGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGTGCATATCTATGCTGTTTATATTTAAACTATAGTAATGAACA  650

seq1  TGGATTTGCAATTCTCGCTGTGGTAGAGTATGGATTTCTTTGGGTATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGCAATTCTCGCTGTGGTAGAGTATGGATTTCTTTGGGTATGTG  700

seq1  CCAAGGAGTAGTATGGTTACTTTAGAATCATAGTTATATTTTTAATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGTAGTATGGTTACTTTAGAATCATAGTTATATTTTTAATTTTT  750

seq1  TGAGAAACCTCAGATTTTCTTAATGTTTCTATTAGTTTAAACTGCTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACCTCAGATTTTCTTAATGTTTCTATTAGTTTAAACTGCTACTA  800

seq1  ACCATAAACAAGGGTTCTTTTCTACCCCAGACACTCAACAGAGTCTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAACAAGGGTTCTTTTCTACCCCAGACACTCAACAGAGTCTGTTG  850

seq1  CCAAATGTCTTTGTGGTAGCCATTCTGATTGTGATTGTTTGGTACTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCTTTGTGGTAGCCATTCTGATTGTGATTGTTTGGTACTTTGA  900

seq1  GGTAATTAGTTTTTATGTGCAGAAATATTGAACACCATTGAGAATATCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTAATTAGTTTTTATGTGCAGAAATATTGAACACCATTGAGAATAT-CA  949

seq1  TTGCCCATTTATCTCTTCCCCTTAAGCCTTCAAATTCTGTCCTCACAATG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGCCCATTTATCTCTTCCCCTTAAGCCTTC-AATTCTGTCCTCACAATG  998

seq1  CCTGCTGCTTT-GTTTCCTTCCATTC-TCTATGTTTGCTCATT-AAAGAA  1047
      ||||||||||| |||||||||||||| |||||||||||||||| ||||||
seq2  CCTGCTGCTTTGGTTTCCTTCCATTCTTCTATGTTTGCTCATTAAAAGAA  1048

seq1  CCATCTTCAAACATTTCTCATCTTCTATTGC-TCCTTTCTGATTTATGTT  1096
      ||||||   ||||||||||||  |||||  | || |||||||||||||||
seq2  CCATCT--CAACATTTCTCATTCTCTATGCCTTCGTTTCTGATTTATGTT  1096

seq1  ATGCACA-TCCAAAGCAA-TCAATGAC-TTTAAAGGAAGTCTG  1136
      ||||||| ||| |||||| |||||||| ||||||||| |||||
seq2  ATGCACATTCCGAAGCAATTCAATGACTTTTAAAGGAGGTCTG  1139