BAC Information

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BAC

Clone NameB6Ng01-294E05
Chromosome5 (Build37)
Map Location 71,594,429 - 71,595,577
singlet/doubletsinglet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E05.bB6Ng01-294E05.g
ACCGA090437GA090438
length1,1501,188
definitionB6Ng01-294E05.b B6Ng01-294E05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagcacattctcccgcaccacatctgcttgcacaatcattttt
cctgccataatgataatgggctgaacctctgaacctgtaagctaacccca
attgaatgttgtcctttataggagttgcctcagtcatagtgtctcctcat
agtgatgaaacactgactgagacaacctctttaaatatcctatttctgaa
taaaactacattctgaggtatgttggaaattcagcacctacatcccagat
actggaactccaggtagtttcaaactcttgctggaggcaactacttttag
aaacccagcccaccaaaaacaactaaagcttgtgtagcactaatttcctg
cccacagtgatggctctcagagacctccatagccaatgcaaactgcagca
acctcttaccaaccaaacacactgtggtcctctagtcttcaacactgcag
ataaattctgagagagttttcaaaatcggtgatattttcctttattaagg
ctcaggcccagtttatggagcttttcccaggaactaaatgtctccaaacc
cccacccctacccctgtgttttacctcacaaagcaaattagttgcattgg
taactggggtatggatatttatgacagaggcacataaacaggccagatga
cttaaatggcttccatttggcttgtcatttatgctccaggaatctgtcat
aaaagacttcaagaaactgataacccccctttacttctcttgcagatcaa
actactataaaatatgttaggcccatatctataacccatactcagctgat
ccacagtctgaaatgaaattgcccattgtagaagtttagttggtcaaatt
gaattcagcattctgactgggagcgggcaaaggaatgtttattgtcatgg
tcagtgagtttttttaatagtgtgttatatactgctatggttggtaatag
ctattgtaaaggtatttgtttacactatcatcttcctgagttctctgccc
cctacttaaagatgaaacctaagtgttatctattgttatggaagaagaca
ccatgcccagcaacttacagaaggaaaacaatttaaattgtggcctataa
cattttaagaatggtaattcaattatcatcaggacatggcgacatgttcc


gaattcctgatctttccagaacttttatcatcaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttttcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
tttggttatatgagactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttc
tggaggcactcagagctatgagtttccctctagaaatgctttcattgtgt
cccataggtttgggtacggtgtggctcattttcattaactctaaaaatct
ttaattcctttctttattccttccttgaccaagtatcatgagagaagagt
ggtaattcagttgcaacgtggatgtgctttcatatacggtgtatgagaat
cgagtctctagggcacatgggggatctcgtgatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71594429_71595577
seq2: B6Ng01-294E05.b_47_1196

seq1  GAATTCTCAGCACATTCTCCCGCACCACATCTGCTTGCACAATCATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCACATTCTCCCGCACCACATCTGCTTGCACAATCATTTTT  50

seq1  CCTGCCATAATGATAATGGGCTGAACCTCTGAACCTGTAAGCTAACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATAATGATAATGGGCTGAACCTCTGAACCTGTAAGCTAACCCCA  100

seq1  ATTGAATGTTGTCCTTTATAGGAGTTGCCTCAGTCATAGTGTCTCCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGTTGTCCTTTATAGGAGTTGCCTCAGTCATAGTGTCTCCTCAT  150

seq1  AGTGATGAAACACTGACTGAGACAACCTCTTTAAATATCCTATTTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAAACACTGACTGAGACAACCTCTTTAAATATCCTATTTCTGAA  200

seq1  TAAAACTACATTCTGAGGTATGTTGGAAATTCAGCACCTACATCCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACATTCTGAGGTATGTTGGAAATTCAGCACCTACATCCCAGAT  250

seq1  ACTGGAACTCCAGGTAGTTTCAAACTCTTGCTGGAGGCAACTACTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACTCCAGGTAGTTTCAAACTCTTGCTGGAGGCAACTACTTTTAG  300

seq1  AAACCCAGCCCACCAAAAACAACTAAAGCTTGTGTAGCACTAATTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCCCACCAAAAACAACTAAAGCTTGTGTAGCACTAATTTCCTG  350

seq1  CCCACAGTGATGGCTCTCAGAGACCTCCATAGCCAATGCAAACTGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGATGGCTCTCAGAGACCTCCATAGCCAATGCAAACTGCAGCA  400

seq1  ACCTCTTACCAACCAAACACACTGTGGTCCTCTAGTCTTCAACACTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTACCAACCAAACACACTGTGGTCCTCTAGTCTTCAACACTGCAG  450

seq1  ATAAATTCTGAGAGAGTTTTCAAAATCGGTGATATTTTCCTTTATTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTGAGAGAGTTTTCAAAATCGGTGATATTTTCCTTTATTAAGG  500

seq1  CTCAGGCCCAGTTTATGGAGCTTTTCCCAGGAACTAAATGTCTCCAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCCAGTTTATGGAGCTTTTCCCAGGAACTAAATGTCTCCAAACC  550

seq1  CCCACCCCTACCCCTGTGTTTTACCTCACAAAGCAAATTAGTTGCATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTACCCCTGTGTTTTACCTCACAAAGCAAATTAGTTGCATTGG  600

seq1  TAACTGGGGTATGGATATTTATGACAGAGGCACATAAACAGGCCAGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGGTATGGATATTTATGACAGAGGCACATAAACAGGCCAGATGA  650

seq1  CTTAAATGGCTTCCATTTGGCTTGTCATTTATGCTCCAGGAATCTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGGCTTCCATTTGGCTTGTCATTTATGCTCCAGGAATCTGTCAT  700

seq1  AAAAGACTTCAAGAAACTGATAACCCCCCTTTACTTCTCTTGCAGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTCAAGAAACTGATAACCCCCCTTTACTTCTCTTGCAGATCAA  750

seq1  ACTACTATAAAATATGTTAGGCCCATATCTATAACCCATACTCAGCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATAAAATATGTTAGGCCCATATCTATAACCCATACTCAGCTGAT  800

seq1  CCACAGTCTGAAATGAAATTGCCCATTGTAGAAGTTTAGTTGGTCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCTGAAATGAAATTGCCCATTGTAGAAGTTTAGTTGGTCAAATT  850

seq1  GAATTCAGCATTCTGACTGGGAGCGGGCAAAGGAATGTTTATTGTCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTCTGACTGGGAGCGGGCAAAGGAATGTTTATTGTCATGG  900

seq1  TCAGTGAGTTTTTTTAATAGTGTGTTATATACTGCTATGGTTGGTAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGTTTTTTTAATAGTGTGTTATATACTGCTATGGTTGGTAATAG  950

seq1  CTATTGTTAAAGGTATTTGTTTACACTATCATCTTCCTGAGTTCTTCTGC  1000
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CTATTG-TAAAGGTATTTGTTTACACTATCATCTTCCTGAGTTC-TCTGC  998

seq1  CCCCTACTTAAAAGATGAAAACCTAAGTG-TATCTATTGTTATGGA--GA  1047
      ||||||||| ||||||| ||||||||||| ||||||||||||||||   |
seq2  CCCCTACTT-AAAGATG-AAACCTAAGTGTTATCTATTGTTATGGAAGAA  1046

seq1  GACACCATGGCCAAGGCAACTTACAGA--GGAAACA--TTTAATTGTGGG  1093
      ||||||||| |||  ||||||||||||  | |||||  || |||||||| 
seq2  GACACCATGCCCA--GCAACTTACAGAAGGAAAACAATTTAAATTGTGGC  1094

seq1  CTTAATAACATTTTAAG-ATGGTTATTCCATTATCATCAGGACAT-GCAG  1141
      ||  ||||||||||||| ||||| |||| |||||||||||||||| ||  
seq2  CT--ATAACATTTTAAGAATGGTAATTCAATTATCATCAGGACATGGCGA  1142

seq1  CATGTTCC  1149
      ||||||||
seq2  CATGTTCC  1150


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