BAC Information

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BAC

Clone NameB6Ng01-294J05
Chromosome5 (Build37)
Map Location 88,932,449 - 89,051,883
singlet/doubletdoublet
Overlap geneEnam, Igj, Crlz1, Rufy3
Upstream geneSult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn
Downstream geneGrsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870, Npffr2, LOC631105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J05.bB6Ng01-294J05.g
ACCGA090668GA090669
length1,0501,096
definitionB6Ng01-294J05.b B6Ng01-294J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,932,449 - 88,933,505)(89,050,771 - 89,051,883)
sequence
gaattctatccctggaacccacaggaaacgtttccaatatataacccagg
tcctactatagcaccacccgtggaccccagaagttattatgttaataatg
ccataggacaagaagaaagcactctctttccttcatggacctcctgggac
cacaggaatcaagctgagaggcagaaagagagtgagccatattttaacag
aaatgtctgggatcagtcaataaatttacacaaatctaatataccaaacc
atccttattccactacatcccctgctagatttccaaaagatccaacatgg
tttgaaggtgagaatttgaactatgatttgcaaattactagtttaagtcc
accagaaagagaacagttggctttcccagacttcctgcctcaaagttacc
caacaggtcaaaatgaagcacacttatttcaccaaagtcaaagagggtct
tgctgtattggtggctccacaggacataaagacaatgtgctggctctaca
agactacacttcatcctatggtcttccaccaaggaagaaccaagaaacca
gtccagtgcatacagaaagcagttatatcaagtatgcaagacctaacgtt
tccccagcaagcatcctacctagtcaaagaaatatctcagagaacaaact
aactgcagaaagcccaaacccaagtccatttggagatggtgtgcctactg
tgaggaaaaatactccatattctggaaagaatcaactagagacaggaatt
gtggccttttctgaagccagctcttctcagccaaaaaacacgccctgtct
taaaagtgaccttggaggagatcggagggatgttctgaaacaattttttg
aaaggcagccagctgagtgaaagaactgctggccttactcctgagcagct
cgtcattggtattcctgataaaggctctgggccagatagcatacaaagtg
aagtccaaggaaaagagggtgagatgcagcacaagccacctacatcatga
agttgccatgctttggctcattcaaatttcactctctaccactggacctc

gaattctttattattgggcaattaactcaagtgtggctctgatcaaagta
aactgaatttataaactcctttattgctcacaataaccctgttaactact
ctttttatctgtacatatcaagaaatggaaagcaccaaaaacccaaaacc
aaaccaaacaaacaaacacccccccccaaaccaccaaaccccacccctca
aaacacaaaaaaataaacaaacaaaatcccctacctaactacaagatata
gccaggtagaaaataaggaagacagactttgaaactaagtacctgggttt
cagggaactattatgaactactctgctaccctggctattcatctatagcc
ttatattaaagtatagccaagacaaggatttggaaaaaacaaaaatataa
cttttttatattcacactgagctgcaggagaaacttgaaacattaaacct
gatcctatgaaggatttattagtaaatttgcttagggaatcttaagtaac
agaactgatctaaagaggcgctgcctcctttacaactggaagagggtagt
aatcaggcctgctagaaacagagagaaaggaaactcttctataactgaaa
ttatgtgaagtcatgtgaggagttaggggacagactgaggaacccagagg
ggacagggactccacaagaagaccagcaaaggcaactaactcttggaggc
tctcagagatgaaccaccaactaaagagaatacacatctgtagcagatgt
gcagcttggtcttcatgtgggtcccccaacaattgggagcagggcttacc
tggactctgttgcctgcccattccacattgaaggatatcctctaaagggt
tccagggaacatcagagggtcaagtcccctgtgtacttatcagtaaagca
tagttctgacagtgggcaaatgttactttgaaaatagcaacactggtgta
gttaattaaataattcagcatgctatgctatgtaatctcacatctgccca
gtgcagacttacagctctgagctctatttaaatgtcaagtgtaacttgga
ccagattctgaaggaaatttagaatgcagcatattgtaattgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88932449_88933505
seq2: B6Ng01-294J05.b_46_1095

seq1  GAATTCTATCCCTGGAACCCACAGGAAACGTTTCCAATATATAACCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCTGGAACCCACAGGAAACGTTTCCAATATATAACCCAGG  50

seq1  TCCTACTATAGCACCACCCGTGGACCCCAGAAGTTATTATGTTAATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTATAGCACCACCCGTGGACCCCAGAAGTTATTATGTTAATAATG  100

seq1  CCATAGGACAAGAAGAAAGCACTCTCTTTCCTTCATGGACCTCCTGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGACAAGAAGAAAGCACTCTCTTTCCTTCATGGACCTCCTGGGAC  150

seq1  CACAGGAATCAAGCTGAGAGGCAGAAAGAGAGTGAGCCATATTTTAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATCAAGCTGAGAGGCAGAAAGAGAGTGAGCCATATTTTAACAG  200

seq1  AAATGTCTGGGATCAGTCAATAAATTTACACAAATCTAATATACCAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTGGGATCAGTCAATAAATTTACACAAATCTAATATACCAAACC  250

seq1  ATCCTTATTCCACTACATCCCCTGCTAGATTTCCAAAAGATCCAACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATTCCACTACATCCCCTGCTAGATTTCCAAAAGATCCAACATGG  300

seq1  TTTGAAGGTGAGAATTTGAACTATGATTTGCAAATTACTAGTTTAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGTGAGAATTTGAACTATGATTTGCAAATTACTAGTTTAAGTCC  350

seq1  ACCAGAAAGAGAACAGTTGGCTTTCCCAGACTTCCTGCCTCAAAGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAGAGAACAGTTGGCTTTCCCAGACTTCCTGCCTCAAAGTTACC  400

seq1  CAACAGGTCAAAATGAAGCACACTTATTTCACCAAAGTCAAAGAGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTCAAAATGAAGCACACTTATTTCACCAAAGTCAAAGAGGGTCT  450

seq1  TGCTGTATTGGTGGCTCCACAGGACATAAAGACAATGTGCTGGCTCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTGGTGGCTCCACAGGACATAAAGACAATGTGCTGGCTCTACA  500

seq1  AGACTACACTTCATCCTATGGTCTTCCACCAAGGAAGAACCAAGAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACACTTCATCCTATGGTCTTCCACCAAGGAAGAACCAAGAAACCA  550

seq1  GTCCAGTGCATACAGAAAGCAGTTATATCAAGTATGCAAGACCTAACGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGCATACAGAAAGCAGTTATATCAAGTATGCAAGACCTAACGTT  600

seq1  TCCCCAGCAAGCATCCTACCTAGTCAAAGAAATATCTCAGAGAACAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCAAGCATCCTACCTAGTCAAAGAAATATCTCAGAGAACAAACT  650

seq1  AACTGCAGAAAGCCCAAACCCAAGTCCATTTGGAGATGGTGTGCCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGAAAGCCCAAACCCAAGTCCATTTGGAGATGGTGTGCCTACTG  700

seq1  TGAGGAAAAATACTCCATATTCTGGAAAGAATCAACTAGAGACAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAATACTCCATATTCTGGAAAGAATCAACTAGAGACAGGAATT  750

seq1  GTGGCCTTTTCTGAAGCCAGCTCTTCTCAGCCAAAAAACACGCCCTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTCTGAAGCCAGCTCTTCTCAGCCAAAAAACACGCCCTGTCT  800

seq1  TAAAAGTGACCTTGGAGGAGATCGGAGGGATGTTCTGAAACAATTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGACCTTGGAGGAGATCGGAGGGATGTTCTGAAACAATTTTTTG  850

seq1  -AAGGCAGCCAGCTGAGTGAAAGAACTGCTGGCCTTACTCCTGAGCAGCT  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCCAGCTGAGTGAAAGAACTGCTGGCCTTACTCCTGAGCAGCT  900

seq1  CGTCATTGGTATTCCTGATAAAGGCTCTGGCCCAGATAGCATACAAAGTG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGTCATTGGTATTCCTGATAAAGGCTCTGGGCCAGATAGCATACAAAGTG  950

seq1  AAGTCCAAGGAAAAGAGGGTGAGATGCAGCAACAAAGGCCACCTACCATC  999
      |||||||||||||||||||||||||||||| ||||  |||||||| ||||
seq2  AAGTCCAAGGAAAAGAGGGTGAGATGCAGC-ACAA--GCCACCTA-CATC  996

seq1  ATGAAGTTGCCATGCTTTGGCTCCAATTCAAAATTTCACTCTTCTACCAC  1049
      |||||||||||||||||||||||  |||| ||||||||||| ||||||||
seq2  ATGAAGTTGCCATGCTTTGGCTC--ATTC-AAATTTCACTC-TCTACCAC  1042

seq1  TGGACCTC  1057
      ||||||||
seq2  TGGACCTC  1050

seq1: chr5_89050771_89051883
seq2: B6Ng01-294J05.g_67_1162 (reverse)

seq1  TGTACAATTTACATATGCTGCCATCCTTAAATTTCCTTCAGATCTTGGTC  50
      |||||||||   |||||||||  ||  |||||||||||||||   |||| 
seq2  TGTACAATTACAATATGCTGCATTC--TAAATTTCCTTCAGAATCTGGT-  47

seq1  CCAGGTTACACTTTGAACAATTTAAATAGAGCTCAGAGGCTGTAAGTCTG  100
      ||| ||||||| ||||   |||||||||||||||||| ||||||||||||
seq2  CCAAGTTACAC-TTGA--CATTTAAATAGAGCTCAGA-GCTGTAAGTCTG  93

seq1  GCCACTTGGGCAGATGTGAGATTTACATAGCATAGCCATTGCCTGAATTA  150
        ||| ||||||||||||||| ||||||||||||| |||   ||||||||
seq2  --CAC-TGGGCAGATGTGAGA-TTACATAGCATAG-CAT--GCTGAATTA  136

seq1  TTTAATTAACTACACCAGTGTTGCTATTTTCAAAGTAACATTTTGCCCAC  200
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TTTAATTAACTACACCAGTGTTGCTATTTTCAAAGTAACA-TTTGCCCA-  184

seq1  CTGTCAGAACTATGCTTTACCTGATAAGTACACAGGGGACTTGACCCTCT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTCAGAACTATGCTTTA-CTGATAAGTACACAGGGGACTTGACCCTCT  233

seq1  GATGTTCCCTGGAACCCCTTAGAGGATATCCTTCAATGTGGAATGGGCAG  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGTTCCCTGGAACCCTTTAGAGGATATCCTTCAATGTGGAATGGGCAG  283

seq1  GCAACAGAGTCCAGGTAAGCCCCTGCT-CCAATTGTTGGGGGACCCACAT  349
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GCAACAGAGTCCAGGTAAG-CCCTGCTCCCAATTGTTGGGGGACCCACAT  332

seq1  GAAGACCAAGCTGCACATCTGCTACAGATGTGTATTCTCTTTAGTTGGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAAGCTGCACATCTGCTACAGATGTGTATTCTCTTTAGTTGGTG  382

seq1  GTTCATCTCTGAGAGCCTCCAAGAGTTAGTTGCCTTTGCTGGTCTTCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCTCTGAGAGCCTCCAAGAGTTAGTTGCCTTTGCTGGTCTTCTTG  432

seq1  TGGAGTCCCTGTCCCCTCTGGGTTCCTCAGTCTGTCCCCTAACTCCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCCCTGTCCCCTCTGGGTTCCTCAGTCTGTCCCCTAACTCCTCAC  482

seq1  ATGACTTCACATAATTTCAGTTATAGAAGAGTTTCCTTTCTCTCTGTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCACATAATTTCAGTTATAGAAGAGTTTCCTTTCTCTCTGTTTC  532

seq1  TAGCAGGCCTGATTACTACCCTCTTCCAGTTGTAAAGGAGGCAGCGCCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCCTGATTACTACCCTCTTCCAGTTGTAAAGGAGGCAGCGCCTC  582

seq1  TTTAGATCAGTTCTGTTACTTAAGATTCCCTAAGCAAATTTACTAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAGTTCTGTTACTTAAGATTCCCTAAGCAAATTTACTAATAAA  632

seq1  TCCTTCATAGGATCAGGTTTAATGTTTCAAGTTTCTCCTGCAGCTCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATAGGATCAGGTTTAATGTTTCAAGTTTCTCCTGCAGCTCAGTG  682

seq1  TGAATATAAAAAAGTTATATTTTTGTTTTTTCCAAATCCTTGTCTTGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAAAAAAGTTATATTTTTGTTTTTTCCAAATCCTTGTCTTGGCT  732

seq1  ATACTTTAATATAAGGCTATAGATGAATAGCCAGGGTAGCAGAGTAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAATATAAGGCTATAGATGAATAGCCAGGGTAGCAGAGTAGTTC  782

seq1  ATAATAGTTCCCTGAAACCCAGGTACTTAGTTTCAAAGTCTGTCTTCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTTCCCTGAAACCCAGGTACTTAGTTTCAAAGTCTGTCTTCCTT  832

seq1  ATTTTCTACCTGGCTATATCTTGTAGTTAGGTAGGGGATTTTGTTTGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACCTGGCTATATCTTGTAGTTAGGTAGGGGATTTTGTTTGTTT  882

seq1  ATTTTTTTGTGTTTTGAGGGGTGGGGTTTGGTGGTTTGGGGGGGGGTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTGTTTTGAGGGGTGGGGTTTGGTGGTTTGGGGGGGGGTGTT  932

seq1  TGTTTGTTTGGTTTGGTTTTGGGTTTTTGGTGCTTTCCATTTCTTGATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGGTTTGGTTTTGGGTTTTTGGTGCTTTCCATTTCTTGATAT  982

seq1  GTACAGATAAAAAGAGTAGTTAACAGGGTTATTGTGAGCAATAAAGGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATAAAAAGAGTAGTTAACAGGGTTATTGTGAGCAATAAAGGAGT  1032

seq1  TTATAAATTCAGTTTACTTTGATCAGAGCCACACTTGAGTTAATTGCCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTCAGTTTACTTTGATCAGAGCCACACTTGAGTTAATTGCCCA  1082

seq1  ATAATAAAGAATTC  1113
      ||||||||||||||
seq2  ATAATAAAGAATTC  1096