BAC Information

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BAC

Clone NameB6Ng01-294J06
Chromosome5 (Build37)
Map Location 115,271,036 - 115,450,423
singlet/doubletdoublet
Overlap gene2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1
Upstream geneSelplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik
Downstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J06.bB6Ng01-294J06.g
ACCGA090670GA090671
length1,1121,086
definitionB6Ng01-294J06.b B6Ng01-294J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,449,300 - 115,450,423)(115,271,036 - 115,272,130)
sequence
gaattctatccctgcgactcacgtggtacaaagagacttatggaagtgcc
ctctgacttccacacgtgtcctgtggtgcctatgcctacacatgtacaaa
acgtatgtgtgatttaaaaaaaaaatggacattttccaagcccctgccag
gagacaagcatcttgctgagctctccaaatgtaagctctcagaattccct
aagtcttcaacaaacgtccatcaataactataatgggttgtgctgtactg
accgcatcttaatgacttcttgttgtccgaggagcgctttggggatagtt
ttctccctccacttttaatggggttctgagaagctcaaactcaggtcggc
aagcttgtaaggcaagcaaccttacctggctgggctggaacttactgtgt
tctcaaacacacatcccaccgtggctacaccttatcatttgagatagggt
ctctctgtctctcccaggacctggagtttgccggctctgctagtctgggt
ggcctgagagacccagatctgcccgtgtccacccctcccagtgctaagaa
acaaatcactaagtctggctggtttgtttttgtttgtttgttttaaaaga
cagggtgttgctaaaattccttcccttccctggggaagatataaacaaaa
caaacacaagcgccatgattccaacaaaaaccaaggtactagtccaggaa
gttcagtctgagaagccagtgagtttacgaggcttacaaacctcacatac
aacggggaggtgggcagaaaagtgggtgaatttaaagcagccacgatgaa
agatctctaccccagcggggacaactactcctactctgtggttggttgga
attgagcccggctgtcctgtcccctccctaactcctgaggtgtgtaatca
ggcagggaggtgtgttggatactcaggtgagagtcccatgaccctttctg
tccctccttctgtgtgcctagccagtttggtcctagagccgagctgctgt
ggctcggagatggtacgtactacacggggtctcacgaggctttctagggc
ctgctgggctgatgactgtgtagaacatgcttgtcttcaaaccacaggat
ccactttttttt
gaattcccgtaaacagcgatgctatctaggaacccttgctgtgtaagaaa
tgctaaaacttgtcaattatgaatggccatcgctgagaacagaggaggga
tgcaggatgagcctggctgcctaggctgaagccacagagtgagcaacaga
ggagctcacacacccccaggactccaggttctcgcttcagcaggtgcgcc
agacagcacacaggggtgcaagcgctggctcccaagcctagaattgaccc
caggaaaagcagcttcctgaggaccagatgtagacgctcgactcgccagc
aagaaggacgccaaaacaggattcttctgcatacatttattggaagagct
tgatagtgaaagcgaaagaccccgaggccaaaaaccagtgctgcttatat
aggcctaggataggcatgtctacacccgattggttatgctttcagtacct
catttacatgcctcgggacaggcaatgtcaaaaaaaaaaaatacaaactc
tactgcacatgggcactttggttgtttacccatattcataggcattggct
tattgaaagcagcgccatcttgtaatggcgtttattggcttcccacatct
cccccttttttattcaatagaaaaggcctaatccgaccatctactctagc
acttcctcagcacaaaaacgatcaagaaggatttagaagggcaaatcatg
atcaccctaccgagtgcgatgaggaaacctcagcagtgtgcaagggctgt
tcaatgatcgttgagtctttctcatcccagtgcaatggatccgtagatcc
gtggggtgcaagagcagaggacttagattgaaagacccacaacggaggac
tcccccacgttctgactcagagaggcgacaccccaaaatcacccacaaga
aacggtcttgctgcaaactgcaagagattttttattcagagcgctctcag
gcccacggtcatacaccaccacaggagtagaggaccgtggcgccgccgag
tagctgattaaggggttattaaagaagaaaccacaactcagagttgtagg
ggttgtggcaaataccaaaataccagtttagagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115449300_115450423
seq2: B6Ng01-294J06.b_47_1158 (reverse)

seq1  AAAAAAAGGTGGATCCCTGTGTGTTTG-AGACCAGCATGGTCTACACAGT  49
      ||||||| |||||| |||||| ||||| |||| |||||| ||||||||||
seq2  AAAAAAAAGTGGAT-CCTGTG-GTTTGAAGACAAGCATGTTCTACACAGT  48

seq1  CAATTCCAGCCCAGCCAGGGCCCTAGAAAGGCCCTCGTGAGACCCCGTGT  99
      ||    |||||||||   ||||||||||||  ||||||||||||||||||
seq2  CA---TCAGCCCAGC--AGGCCCTAGAAAG--CCTCGTGAGACCCCGTGT  91

seq1  AGTACGGTACCATCCTCCGAGCCACAGCAGCTCGGCTCTTAGGACCAAAC  149
      ||||| ||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGTAC-GTACCAT-CTCCGAGCCACAGCAGCTCGGCTC-TAGGACCAAAC  138

seq1  TGGCTAGGCACACAGAAGGGAGGGACAGAAAGGGTCATGGGACTCTCACC  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGCTAGGCACACAGAA-GGAGGGACAGAAAGGGTCATGGGACTCTCACC  187

seq1  TGAGTATCCAACACACCTCCCTGCCCTGATTACACACCTCAGGAGTTAGG  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAGTATCCAACACACCTCCCTG-CCTGATTACACACCTCAGGAGTTAGG  236

seq1  GAGGGGACAGGACAGCC-GGCTCAATTCCAACCAACCACAGAGTAGGAGT  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGGGACAGGACAGCCGGGCTCAATTCCAACCAACCACAGAGTAGGAGT  286

seq1  AGTTGTCCCCGCTGGGGTAGAGATCTTTCATCGTGGCTGCTTTAAATTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCCCGCTGGGGTAGAGATCTTTCATCGTGGCTGCTTTAAATTCA  336

seq1  CCCACTTTTCTGCCCACCTCCCCGTTGTATGTGAGGTTTGTAAGCCTCGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTTCTGCCCACCTCCCCGTTGTATGTGAGGTTTGTAAGCCTCGT  386

seq1  AAACTCACTGGCTTCTCAGACTGAACTTCCTGGACTAGTACCTTGGTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTGGCTTCTCAGACTGAACTTCCTGGACTAGTACCTTGGTTTT  436

seq1  TGTTGGAATCATGGCGCTTGTGTTTGTTTTGTTTATATCTTCCCCAGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAATCATGGCGCTTGTGTTTGTTTTGTTTATATCTTCCCCAGGGA  486

seq1  AGGGAAGGAATTTTAGCAACACCCTGTCTTTTAAAACAAACAAACAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAATTTTAGCAACACCCTGTCTTTTAAAACAAACAAACAAAAA  536

seq1  CAAACCAGCCAGACTTAGTGATTTGTTTCTTAGCACTGGGAGGGGTGGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGCCAGACTTAGTGATTTGTTTCTTAGCACTGGGAGGGGTGGAC  586

seq1  ACGGGCAGATCTGGGTCTCTCAGGCCACCCAGACTAGCAGAGCCGGCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCAGATCTGGGTCTCTCAGGCCACCCAGACTAGCAGAGCCGGCAAA  636

seq1  CTCCAGGTCCTGGGAGAGACAGAGAGACCCTATCTCAAATGATAAGGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTCCTGGGAGAGACAGAGAGACCCTATCTCAAATGATAAGGTGT  686

seq1  AGCCACGGTGGGATGTGTGTTTGAGAACACAGTAAGTTCCAGCCCAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGTGGGATGTGTGTTTGAGAACACAGTAAGTTCCAGCCCAGCCA  736

seq1  GGTAAGGTTGCTTGCCTTACAAGCTTGCCGACCTGAGTTTGAGCTTCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTTGCTTGCCTTACAAGCTTGCCGACCTGAGTTTGAGCTTCTCA  786

seq1  GAACCCCATTAAAAGTGGAGGGAGAAAACTATCCCCAAAGCGCTCCTCGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCATTAAAAGTGGAGGGAGAAAACTATCCCCAAAGCGCTCCTCGG  836

seq1  ACAACAAGAAGTCATTAAGATGCGGTCAGTACAGCACAACCCATTATAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAAGTCATTAAGATGCGGTCAGTACAGCACAACCCATTATAGT  886

seq1  TATTGATGGACGTTTGTTGAAGACTTAGGGAATTCTGAGAGCTTACATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGGACGTTTGTTGAAGACTTAGGGAATTCTGAGAGCTTACATTT  936

seq1  GGAGAGCTCAGCAAGATGCTTGTCTCCTGGCAGGGGCTTGGAAAATGTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTCAGCAAGATGCTTGTCTCCTGGCAGGGGCTTGGAAAATGTCC  986

seq1  ATTTTTTTTTTAAATCACACATACGTTTTGTACATGTGTAGGCATAGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTAAATCACACATACGTTTTGTACATGTGTAGGCATAGGCA  1036

seq1  CCACAGGACACGTGTGGAAGTCAGAGGGCACTTCCATAAGTCTCTTTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGACACGTGTGGAAGTCAGAGGGCACTTCCATAAGTCTCTTTGTA  1086

seq1  CCACGTGAGTCGCAGGGATAGAATTC  1124
      ||||||||||||||||||||||||||
seq2  CCACGTGAGTCGCAGGGATAGAATTC  1112

seq1: chr5_115271036_115272130
seq2: B6Ng01-294J06.g_67_1152

seq1  GAATTCCCGTAAACAGCGATGCTATCTAGGAACCCTTGCTGTGTAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGTAAACAGCGATGCTATCTAGGAACCCTTGCTGTGTAAGAAA  50

seq1  TGCTAAAACTTGTCAATTATGAATGGCCATCGCTGAGAACAGAGGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAACTTGTCAATTATGAATGGCCATCGCTGAGAACAGAGGAGGGA  100

seq1  TGCAGGATGAGCCTGGCTGCCTAGGCTGAAGCCACAGAGTGAGCAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATGAGCCTGGCTGCCTAGGCTGAAGCCACAGAGTGAGCAACAGA  150

seq1  GGAGCTCACACACCCCCAGGACTCCAGGTTCTCGCTTCAGCAGGTGCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACACACCCCCAGGACTCCAGGTTCTCGCTTCAGCAGGTGCGCC  200

seq1  AGACAGCACACAGGGGTGCAAGCGCTGGCTCCCAAGCCTAGAATTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACACAGGGGTGCAAGCGCTGGCTCCCAAGCCTAGAATTGACCC  250

seq1  CAGGAAAAGCAGCTTCCTGAGGACCAGATGTAGACGCTCGACTCGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGCAGCTTCCTGAGGACCAGATGTAGACGCTCGACTCGCCAGC  300

seq1  AAGAAGGACGCCAAAACAGGATTCTTCTGCATACATTTATTGGAAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGACGCCAAAACAGGATTCTTCTGCATACATTTATTGGAAGAGCT  350

seq1  TGATAGTGAAAGCGAAAGACCCCGAGGCCAAAAACCAGTGCTGCTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGAAAGCGAAAGACCCCGAGGCCAAAAACCAGTGCTGCTTATAT  400

seq1  AGGCCTAGGATAGGCATGTCTACACCCGATTGGTTATGCTTTCAGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGGATAGGCATGTCTACACCCGATTGGTTATGCTTTCAGTACCT  450

seq1  CATTTACATGCCTCGGGACAGGCAATGTCAAAAAAAAAAAATACAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATGCCTCGGGACAGGCAATGTCAAAAAAAAAAAATACAAACTC  500

seq1  TACTGCACATGGGCACTTTGGTTGTTTACCCATATTCATAGGCATTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCACATGGGCACTTTGGTTGTTTACCCATATTCATAGGCATTGGCT  550

seq1  TATTGAAAGCAGCGCCATCTTGTAATGGCGTTTATTGGCTTCCCACATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAGCAGCGCCATCTTGTAATGGCGTTTATTGGCTTCCCACATCT  600

seq1  CCCCCTTTTTTATTCAATAGAAAAGGCCTAATCCGACCATCTACTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTTTATTCAATAGAAAAGGCCTAATCCGACCATCTACTCTAGC  650

seq1  ACTTCCTCAGCACAAAAACGATCAAGAAGGATTTAGAAGGGCAAATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCAGCACAAAAACGATCAAGAAGGATTTAGAAGGGCAAATCATG  700

seq1  ATCACCCTACCGAGTGCGATGAGGAAACCTCAGCAGTGTGCAAGGGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTACCGAGTGCGATGAGGAAACCTCAGCAGTGTGCAAGGGCTGT  750

seq1  TCAATGATCGTTGAGTCTTTCTCATCCCAGTGCAATGGATCCGTAGATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATCGTTGAGTCTTTCTCATCCCAGTGCAATGGATCCGTAGATCC  800

seq1  GTGGGGTGCAAGAGCAGAGGACTTAGATTGAAAGACCCACAACGGAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGCAAGAGCAGAGGACTTAGATTGAAAGACCCACAACGGAGGAC  850

seq1  TCCCCCACGTTCTGACTCAGGAGAGGCGACACCCCAAAATCACCCACAAG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCCCACGTTCTGACTCA-GAGAGGCGACACCCCAAAATCACCCACAAG  899

seq1  AAACGGTCTTGCTGCAAACTGCAAGAGGATTTTTATTCAAGAGCGCTCTC  950
      |||||||||||||||||||||||||||  ||||||||| |||||||||||
seq2  AAACGGTCTTGCTGCAAACTGCAAGAGATTTTTTATTC-AGAGCGCTCTC  948

seq1  AGGCCCACGGTCATACACCA-CACAGGAGTAGAGGACCGTGGCG-CGCCG  998
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  AGGCCCACGGTCATACACCACCACAGGAGTAGAGGACCGTGGCGCCGCCG  998

seq1  AGTAGCTGGATAAGGGGGTATTTAAAGGAAGAAACCACAACTCAAGGAGG  1048
      ||||||||  ||||||| ||||  || |||||||||||||||||  ||| 
seq2  AGTAGCTGATTAAGGGGTTATT--AAAGAAGAAACCACAACTCA--GAGT  1044

seq1  TGGGAAGGGGGTTGTTGGAAAATACCAAAAATACCAGTTAAGAGTCA  1095
      ||     ||||||| ||| ||||||| |||||||||||| |||||||
seq2  TG---TAGGGGTTG-TGGCAAATACC-AAAATACCAGTTTAGAGTCA  1086